cnot6l (cnot6l,LOC107752360,LOC107663397,LOC107567468,LOC107746779)


Basic Information

Item Value
gene id cnot6l
gene name cnot6l,LOC107752360,LOC107663397,LOC107567468,LOC107746779
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14334218 ~ 14346680 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239121.1
ataaaaataaaactgtgtgtaatgtttttaataagacTTGGGTGACGCCATGGGCCTTGTGATGCAATTAATGGCGTAAAATAATAGCCCGATCTTTTTTGaatcgtttttttaaacagcctgttcaaaagaaccgattcgGACTTCTTCTCGTTGGTTGTAAAGGGACCGCGGACTGGAGCGGAAGCTCAGAGTGTTGTCCTTCCTTCTGCCCGACTCTCAGGATGAGGATCGGTCGCAGTTTGTCCGTATGTCTCTGATCATATCACACCAGCAGCTCCTCTCCCACCTCCCGAATGCAGaTTAACAGGCATGCCAAAGGAAAAATATGATCCTCCAGACCCACGCAGATTATATACAATCATGTCAGCCGAGGAAGCGGCCAGCGGGAAGAAGTCACACTGGACCGAGTTGGAGATTTCTGGGCGGGTCAGAAGTCTGAGCAGCTCACTATGGACGCTGACCCATCTGACTGCTCTccacatcaacaacaacaacctgaGCCGGATCCCTCCCGAAATCGCAAAGCTACCCCATCTTGTCTACCTaaacctgtcctccaacaaactGCGCAGCCTGCCAGCAGAACTCGGCAACATGGTGACTCTCAGgGAATTGCTTTTGAACAACAATTGTTTACGAGTTTTGCCTTATGAACTTGGTCGGCTGTTCCAGTTGCAAACCCTTGGCCTCAAAGGTAATCCATTGTCCCAAGATATACTCAACCTGTATCAGGAGCCTGATGGAACAAGGAAGTTACTAAATTACATGCTTGACAATCTTGCAGTGCACCCAGAACAGCTCCCCCAAAGACCTTGGATCACTTTGAGGGAGCGAGACCAAATGATGCCCACAGCTGTGTTCACGGTAATGTGCTACAACGTACTGTGTGACAAGTATGCAACAAGACAGTTGTACGGCTACTGTCCCTCATGGGCCCTTAACTGGGAGTACAGGAAGAAGGGCATCATGGAGGAGATCACTAACTGTGATGCTGACATCATAAGCCTGCAGGAGGTGGAAACAGAGCAGTACTACACTTTCTTTCTGGAAACACTAAAAGAGCGTGGATATGATggctttttctgtccaaaatcTCGTACCAAACTCGTGTCAGAACAGGAGCGGAAACATGTGGATGGCTGTGCTGTGTTCTTCAAGACCGAGAAaTTTGTTCTGgtgcagaaacacacagtgGAGTTCAATCAGGTTGCCATGGCAAACTCAGAGGGCTCAGAGGTTATGCTAAACCGAGTCATGACCAAAGATAACATCGGAGTAGCTGTCCTGTTGGAAGTGAAGAAAGACTTGTTTGTTAGTGgTTTAAAGCCGCCTTCAGAGAAACAGCACCTGCTGGTAGCTAACGCCCACATGCACTGGGATCCGGAGTACTCGGATGTGAAGCTCATCCAGACAATGATGTTTCTGTCTGAACTAAAGAGCATCGCTGAGAGGGCATCGGGATCCATCAACTCTTCATCACCCACATCAGACACCAGCTCCATCCCTATCGTCCTCTGCGCTGACCTCAATTCACTCCCAGACTCGGGTGTGGTGGAGTATCTGAGTAATGGCGGAGTTGCAGAAAATCACAAAGATTTTAAGGAACTGCGTTACAGCGATTGTCTAACCAACTTCAGTTGCAATGGCAAAAATGGCAAGCCTGATGGCAGTATCACACACAGCTTTCAGCTGAAGAGTGCCTATGAGGGGAATCTCATGCCCTACACCAACTACACGTATGACTTCAAGGGCGTGATTGACTACATTTTCTTCTCTAAGACGCACATGCGTGTTCTGGGCGttctgggtccactggagactCAGTGGCTGAAGGACAACAACATAACGGGCTGCCCCCACCCACACATCCCCTCCGATCACTTTTCCCTCCTGGCTCAGCTGGAGTACCACCCGCCCTTACCCCCCCTCAACGGGCTGCATCTGCCTGTCCACAGCAGTACTGCCTGTGAAAGCAAGACGCTTACAGAGTGAGCCAGCACCAGCACCCTTCCATCCACTCATCCGTTCATCTGTCCATCTCTTCTCTTCACCAGAGAGACACGATGACTTCTAAAGCGGCCGTGATCCAGttataatgttgttgttatCGAAACGTGCCGTGGTCAGCAGTTATAAGCCAGCTTGTTTTGCAGAAATGGCAGGATCTTAAATCTTTCTGTTATAAAGTGGAGAAGATCGCCATTGTTTCCCTGGTTAGGGgtagcatttttgttttctgatgGGTATTTTTATATGCTCTCCTCACAGAAATTCCCACTGAACATGCTGAACATATTTCCTCTTGGCAAATGGTCTAATTAGACAGTTATTTTAATCCAGATTGATGAACGGGcggtattttttaaaataccaataaaataaaataagcatgaGGAAAATAGCAGTAGTCTTTTACTGAATCTGTATTACGCAATAGGGTTTGAGGTCAGTCTCGTGAgaaattcaaatgaataaagaaCTTGCATGATTGTAAGATGATGTAAAGCATTGTTTTGCCAAGAACCTTGAGACCCATTGATTAGAATATccaaaaatgagcattttcCCAATGTGATTATAAGGCTTTATCACTGGATTTTCTCAAGGActgagacttttttttcatgcagtttctccTCAGCTGAGGAGTACACATTTTGTAACTCTCTTATTTAGTCTATACACACATGTTGACGATATGGGGgggaaaatatttgtttgcaaatgtaAATGGTGCTACATGTGGCCCatttgtaaaacaataaaagtattGTCCTAGTCTCCCACCTTAAAGGCAATaaagatgtcattttaaagaaa
>XM_043239122.1
taataaaaataaaactgtgtgtaatgtttttaataagacTTGGGTGACGCCATGGGCCTTGTGATGCAATTAATGGCGTAAAATAATAGCCCGATCTTTTTTGaatcgtttttttaaacagcctgttcaaaagaaccgattcgGACTTCTTCTCGTTGGTTGTAAAGGGACCGCGGACTGGAGCGGAAGCTCAGAGTGTTGTCCTTCCTTCTGCCCGACTCTCAGGATGAGGATCGGTCGCAGTTTGTCCGTATGTCTCTGATCATATCACACCAGCAGCTCCTCTCCCACCTCCCGAATGCAGaTTAACAGGCATGCCAAAGGAAAAATATGATCCTCCAGACCCACGCAGATTATATACAATCATGTCAGCCGAGGAAGCGGCCAGCGGGAAGAAGTCACACTGGACCGAGTTGGAGATTTCTGGGCGGGTCAGAAGTCTGAGCAGCTCACTATGGACGCTGACCCATCTGACTGCTCTccacatcaacaacaacaacctgaGCCGGATCCCTCCCGAAATCGCAAAGCTACCCCATCTTGTCTACCTaaacctgtcctccaacaaactGCGCAGCCTGCCAGCAGAACTCGGCAACATGGTGACTCTCAGgGAATTGCTTTTGAACAACAATTGTTTACGAGTTTTGCCTTATGAACTTGGTCGGCTGTTCCAGTTGCAAACCCTTGGCCTCAAAGGTAATCCATTGTCCCAAGATATACTCAACCTGTATCAGGAGCCTGATGGAACAAGGAAGTTACTAAATTACATGCTTGACAATCTTGCAGTGCACCCAGAACAGCTCCCCCAAAGACCTTGGATCACTTTGAGGGAGCGAGACCAAATGATGCCCACAGCTGTGTTCACGGTAATGTGCTACAACGTACTGTGTGACAAGTATGCAACAAGACAGTTGTACGGCTACTGTCCCTCATGGGCCCTTAACTGGGAGTACAGGAAGAAGGGCATCATGGAGGAGATCACTAACTGTGATGCTGACATCATAAGCCTGCAGGAGGTGGAAACAGAGCAGTACTACACTTTCTTTCTGGAAACACTAAAAGAGCGTGGATATGATggctttttctgtccaaaatcTCGTACCAAACTCGTGTCAGAACAGGAGCGGAAACATGTGGATGGCTGTGCTGTGTTCTTCAAGACCGAGAAaTTTGTTCTGgtgcagaaacacacagtgGAGTTCAATCAGGTTGCCATGGCAAACTCAGAGGGCTCAGAGGTTATGCTAAACCGAGTCATGACCAAAGATAACATCGGAGTAGCTGTCCTGTTGGAAGTGAAGAAAGACTTGTTTGTTAGTGgTTTAAAGCCGCCTTCAGAGAAACAGCACCTGCTGGTAGCTAACGCCCACATGCACTGGGATCCGGAGTACTCGGATGTGAAGCTCATCCAGACAATGATGTTTCTGTCTGAACTAAAGAGCATCGCTGAGAGGGCATCGGGATCCATCAACTCTTCATCACCCACATCAGACACCAGCTCCATCCCTATCGTCCTCTGCGCTGACCTCAATTCACTCCCAGACTCGGGTGTGGTGGAGTATCTGAGTAATGGCGGAGTTGCAGAAAATCACAAAGATTTTAAGGAACTGCGTTACAGCGATTGTCTAACCAACTTCAGTTGCAATGGCAAAAATGGCAAGCCTGATGGCAGTATCACACACAGCTTTCAGCTGAAGAGTGCCTATGAGGGGAATCTCATGCCCTACACCAACTACACGTATGACTTCAAGGGCGTGATTGACTACATTTTCTTCTCTAAGACGCACATGCGTGTTCTGGGCGttctgggtccactggagactCAGTGGCTGAAGGACAACAACATAACGGGCTGCCCCCACCCACACATCCCCTCCGATCACTTTTCCCTCCTGGCTCAGCTGGAGTACCACCCGCCCTTACCCCCCCTCAACGGGCTGCATCTGCCTGTCCACAGTACTGCCTGTGAAAGCAAGACGCTTACAGAGTGAGCCAGCACCAGCACCCTTCCATCCACTCATCCGTTCATCTGTCCATCTCTTCTCTTCACCAGAGAGACACGATGACTTCTAAAGCGGCCGTGATCCAGttataatgttgttgttatCGAAACGTGCCGTGGTCAGCAGTTATAAGCCAGCTTGTTTTGCAGAAATGGCAGGATCTTAAATCTTTCTGTTATAAAGTGGAGAAGATCGCCATTGTTTCCCTGGTTAGGGgtagcatttttgttttctgatgGGTATTTTTATATGCTCTCCTCACAGAAATTCCCACTGAACATGCTGAACATATTTCCTCTTGGCAAATGGTCTAATTAGACAGTTATTTTAATCCAGATTGATGAACGGGcggtattttttaaaataccaataaaataaaataagcatgaGGAAAATAGCAGTAGTCTTTTACTGAATCTGTATTACGCAATAGGGTTTGAGGTCAGTCTCGTGAgaaattcaaatgaataaagaaCTTGCATGATTGTAAGATGATGTAAAGCATTGTTTTGCCAAGAACCTTGAGACCCATTGATTAGAATATccaaaaatgagcattttcCCAATGTGATTATAAGGCTTTATCACTGGATTTTCTCAAGGActgagacttttttttcatgcagtttctccTCAGCTGAGGAGTACACATTTTGTAACTCTCTTATTTAGTCTATACACACATGTTGACGATATGGGGgggaaaatatttgtttgcaaatgtaAATGGTGCTACATGTGGCCCatttgtaaaacaataaaagtattGTCCTAGTCTCCCACCTTAAAGGCAATaaagatgtcattttaaagaaa

Function

symbol description
cnot6l Predicted to enable poly(A)-specific ribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA poly(A) tail shortening. Predicted to act upstream of or within gene silencing by RNA; mRNA processing; and regulation of translation. Predicted to be part of CCR4-NOT complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CNOT6L (CCR4-NOT transcription complex subunit 6 like).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004535 poly(A)-specific ribonuclease activity molecular_function

KEGG:

id description
K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239121.1 True 2823 mRNA 0.46 13 14334218 14346678
XM_043239122.1 False 2822 mRNA 0.46 13 14334218 14346680

Neighbor

gene id symbol gene type direction distance location
LOC122344799 nyap1,LOC107746410,LOC107599218,LOC101885998,LOC107596102,LOC107661215,LOC107734142 coding downstream 60081 14240339 ~ 14274137 (-)
atp1b2b LOC107746408,LOC107599200,LOC107663400,LOC107596104,LOC107661212,LOC107734137 coding downstream 95872 14225990 ~ 14238346 (-)
chrne chrne,LOC107663376,LOC107599201,LOC108428951,LOC108260097,LOC106603603 coding downstream 114138 14212659 ~ 14220080 (-)
pld2 pld2,LOC107746406,LOC107663402,LOC107734122,LOC107661209,LOC107596108 coding downstream 121901 14191695 ~ 14212317 (-)
mink1 mink1,LOC107746403,LOC107596107 coding downstream 143746 14156523 ~ 14190472 (-)
paqr3a paqr3a,paqr3,LOC107661222,LOC107567467,LOC107599192,LOC107663396 coding upstream 146909 14493589 ~ 14500572 (-)
antxr2a antxr2,antxr2a,LOC107663391,LOC107746853,LOC107661223,LOC107602005,LOC107744869 coding upstream 226875 14573555 ~ 14616878 (-)
prkg2 prkg2,LOC107746786,LOC107599184,LOC107744862,LOC107602032 coding upstream 359697 14706377 ~ 14717330 (-)
rasgef1ba rasgef1ba,rasgef1b,LOC107599189,LOC107663389,LOC107744864,LOC107746854 coding upstream 371844 14718524 ~ 14778259 (-)
cds1 cds1,LOC107602031,LOC107663388,LOC107744867 coding upstream 448669 14795349 ~ 14810245 (-)
G36537 NA non-coding downstream 13224 14311768 ~ 14320994 (-)
G36562 NA non-coding downstream 22890 14310962 ~ 14311328 (-)
G36561 NA non-coding downstream 23358 14310624 ~ 14310860 (-)
G36541 NA non-coding downstream 24151 14276096 ~ 14310067 (-)
G36385 LOC107596209,LOC107734118,LOC107661259 non-coding downstream 357148 13975352 ~ 13977070 (-)
G36567 NA non-coding upstream 2428 14349108 ~ 14349936 (-)
LOC122344807 NA non-coding upstream 117624 14464304 ~ 14467777 (-)
G36602 NA non-coding upstream 139134 14485814 ~ 14488728 (-)
G36631 NA non-coding upstream 305415 14652095 ~ 14652393 (-)
G36696 NA non-coding upstream 352056 14698736 ~ 14698953 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other downstream 31837 14292063 ~ 14302381 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other downstream 51598 14279674 ~ 14282620 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 277513 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 324682 14001934 ~ 14009536 (-)
LOC122345901 NA other downstream 486148 13845403 ~ 13848070 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 859271 15205951 ~ 15264945 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other upstream 947176 15293856 ~ 15308440 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 1003336 15350016 ~ 15367413 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 1221339 15568019 ~ 15578967 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 1356853 15703533 ~ 15709430 (-)

Expression


Co-expression Network