CI01000004_15906907_15909647 (HNRNPC)


Basic Information

Item Value
gene id CI01000004_15906907_15909647
gene name HNRNPC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15906907 ~ 15909669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15906907_15909647.mRNA
TCGTCCTCCCAGCGCTAGTCAGCTGATAGCCAGCAACGTCACAAATAAGACAGACCCACGATCGCTGAACTCAAGGGTATTCATTGGAAACCTAAACACTATGCTGGTCACCAAGGCAGATGTTGAAGCCATTTTTAGCAAATACGGCAAGATTGTTGGCTGCTCTGTGCATAAGGGCTACGCCTTTGTCCAGTACGTCAACGAGAGGAACGCACGAGCAGCTGTAGCAGGAGAGGACGGCCGGATGGTCGTTGGACAGGTGCTTGATATTAACTTGGCAGGAGAGCCCAAACCTCACAGGTCAAATACATCAAAGCGATCAGCTGGAGATATGTACAGTCTCTCCAGCAGTAGTTCTGGTTTTGAGCTTGATTATGATTTCCAGAGAGAGTACTATGACAGAATGTATTCGTATCCTTCCCGTGTGCCCCCGCCACCACCACCTCCTCTGTCACGGGCTGTGATCCCTTCCAAACGTCCACGGGTCAGTATGAGTGGGGGAACCAGCCGCCGCACCAAGTCCAGTTTCTCAACTTCTTCCAAGAGCAGCCAGCGGACGCCCTCTCGAGCCCTAAAAGCAGATGACCTCCAAACTATTAAGAGAGAGCTTTCTCAAATCAAACACAAGGTTGACTATCTGCTGGAGAGTCTGGACAGGATGGAGAAAGACCACAGCAAGAAATCCGAGGGGAAGAGTGTGAAGGCAGAAGTGAGTGAGGCTTCCTCCCTGCAGCATTCCAGCAAGAAAGACAGAGAGAGAGAAGAGCAAGAGATAAACGATTCTGAGGAGGAGAGAGATCTGTTGGAAGAAGAAGAGGAGGAGGTATGTGGAAATGAATCTGTTTGCAGAATTATGGAGGTTAAGATTCAAGTGTAATTGGTGCTGTCCTATCTAATTA

Function

symbol description
hnrnpc Enables mRNA 3'-UTR binding activity. Predicted to be located in viral nucleocapsid. Predicted to be active in nucleus. Orthologous to several human genes including HNRNPC (heterogeneous nuclear ribonucleoprotein C).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15906907_15909647.mRNA True 899 mRNA 0.49 6 15906907 15909669

Neighbor

gene id symbol gene type direction distance location
CI01000004_15892502_15900203 DCAF8 coding upstream 6055 15890373 ~ 15900852 (+)
CI01000004_15867404_15875293 NA coding upstream 31603 15866985 ~ 15875304 (+)
CI01000004_15859240_15861471 APOL1 coding upstream 43458 15859240 ~ 15863449 (+)
CI01000004_15825817_15827475 TEP1 coding upstream 79304 15825817 ~ 15827603 (+)
CI01000004_15787382_15803133 NA coding upstream 103763 15787382 ~ 15803144 (+)
CI01000004_15930478_15944692 NA coding downstream 20809 15930478 ~ 15944744 (+)
CI01000004_15947153_15953245 NA coding downstream 37484 15947153 ~ 15953870 (+)
CI01000004_16008731_16013012 NA coding downstream 98946 16008615 ~ 16013049 (+)
CI01000004_16017111_16024481 SALL2 coding downstream 107316 16016985 ~ 16024782 (+)
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding downstream 127455 16037124 ~ 16044563 (+)
G34213 NA non-coding upstream 19373 15887278 ~ 15887534 (+)
G34205 NA non-coding upstream 63505 15843132 ~ 15843402 (+)
G34196 NA non-coding upstream 126283 15779675 ~ 15780624 (+)
G34195 NA non-coding upstream 127409 15779166 ~ 15779498 (+)
G34194 NA non-coding upstream 129556 15777033 ~ 15777351 (+)
G34214 NA non-coding downstream 11014 15920683 ~ 15920886 (+)
G34215 NA non-coding downstream 14035 15923704 ~ 15924496 (+)
G34216 NA non-coding downstream 18832 15928501 ~ 15928750 (+)
G34228 NA non-coding downstream 105237 16014906 ~ 16015106 (+)
G34229 NA non-coding downstream 109594 16019263 ~ 16019489 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 814938 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 1870007 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3251196 12646838 ~ 12652570 (+)
G31865 NA other upstream 3711760 12192130 ~ 12197418 (+)
CI01000004_11666900_11667179 NA other upstream 4239248 11666900 ~ 11667659 (+)
G34220 NA other downstream 29688 15939357 ~ 15939950 (+)
G33815 NA other downstream 153746 16063415 ~ 16066464 (+)
G34400 NA other downstream 1067659 16971995 ~ 17025976 (+)

Expression


Co-expression Network