phf23a (phf23a,LOC107599938,LOC107744450,LOC107687682,LOC107726379,LOC107592297,LOC107672758)


Basic Information

Item Value
gene id phf23a
gene name phf23a,LOC107599938,LOC107744450,LOC107687682,LOC107726379,LOC107592297,LOC107672758
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10918773 ~ 10922782 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239138.1
CGCTTTACGTGCTTGCGTCACAGGGTAATTTCTGTCGAGACCGCGCGTAACCTAGACGTTCAAGACTTTGTTGAATGCAGTTGCAAAAAAGCTCGATTTAGATATTTTGATATTCGAAAATTGCTAGCTAACTCGATATTTTTCGTCTTTGCTTCGCGTTTGTGGATACAATCAAGGTGTCAGCAGTTTTGTACGGTAGATCTAAAACCATCAGCTTAAATTCGCTGCTGATCAACGAGGATCGAAGACAAGATaacaccaccaccatcatcatcatcatcgaaAATTGACGTCTGGACTAAATAATACACGGTTAAGCTTCATTTTAGCTAAACTATGATCTAATCGTCGAAAAATCTCGTTGTTTGTTTAGTATTACAGTTTTGATGACGAGACTACTCCGAGCATATGGCAAACCTTCCTTCGGTTATGCGGTAGCTTATTAGTTATCCGTTAAATTCAAAAGCAACGAGACCTGCATATATTTTccactggaagaaatttcaCTTTTCCTCAAAGTGACTAGCACGATAATTAGCAGGAAATTAAACAACCAACACCAAGAACAACCCAACTTTGTGGTACTAACGTTAAGTTACCGCACCATGTTGGGTATTATGGACCATCACCAAgACACCGTCCGGAATTGTAAAACGGAGGCTTTGCCTCCAGAGCGTAAAAAGAGGACCGTGGAGGATTTCAATAAGTTTTGCAGCTTTGTCCTGGCCTATGCTGGGTACATTCCACCTCAGAAAGAGGAGAGTTCATGGTCTCCATCTTCATCTCCATGTGCGCACGAGCTTTCTGAGCTCTCGGGCGAAGGGTCTGTGAAGGATGGCTGGACAGATGCACACTCCAGCCTTGACAACATTCACGGTTTGGTCCACAAAGCTGAGACAGACAGGAGCAGCAGCAGTATAGAGTTCAGCCATCTTCAGTCGGACAGCTCCTTAGACAAGATGAGATTGAAAGACTCTCTGAACCAGATCCATCTGCATAGTAAAGCTGAGCGGAAGAAGGTGAAGAAACTCGGCCGCTTCTCTTTAGGAGGGCCGAGAAAAAGCATCTCTGAGGCAAGAGCGCACAAACAATCGAAAGCGGCactaaagaaaatgaagagatCGGTAAAGCCCGAGAGACACTTTCCATCCACAAGCCCTTTGAACGAAGGGCTACAAAAGGAGGAGGAGCTAACAGAACAGACCGTTGACATGCATGAGGCGGGGCTTAAACTGGAGTCCAATCCAGAAACAGACCTGAGCTCTTGCGAAACTGACACATTGGTGACTGATGAGGATATCATGGTAGAGTCTGGTGATGATTCGTGGGATTTGATTACGTGTTATTGTGGGAAGCCATTTGCTGGACGTCCCATGATTGAATGTGACGAGTGCTCCATATGGGTCCATCTCTCCTGCGCTAAGATTAAGAAGTCCAATGTACCTGATATTTTCTACTGCTACAGATGCAGGGACTCTCGGGGCTCCACGGTCAAAAGAGACCACTGAGAATAAATGTATGGGAGCAGAtcctgtgtgtgtatttaaataaatgaggcGTTCTCATACCTGTACTTTTTACTTTTCCGATTAATCTTAATTAGtttctgttaaattaaaaaaaaaaagatttctataaCCCCATTTCTTCTCCTTTCGTTCTGTGTTGAAAGGCTGGTCTCGGTTTAAACGTTTTTCAGGTAGAAGGTTATACTAAAACACATGCACTTATTTGCACTACTGTATGTCAAGATGGTTGAATCTCACAAAACGTGTCAAAGAACATTAACCATATTTTAGGATGAATacgattttttattttcttgacaTTTCACAACGTTTATCCCAAAGTTTTCATATCTGAGTCCAAATACCATGTACAAAGCATCCATTAAAACAGCTCTTTCCAGCAAAGAGGTGTCGTTCTAATCCAGTATTTTTTCCGTCTCGTCCGTGGGGGCCATTTAACACAGGTCTAGCACTAAACAGGCACACCTTATTTGGGTCATAGAGCAATGTATGAAACACTTAATGAGTGCAAACAGGAGTGGTAGATAAGGGACACCTCCAGCTCAGATCTGTACAACTTTCAAAACACTGTTGAAatcaatgtctttttttttttatttttataagtaaCGTTTTCAGTCTCGTGATGAATATCCTCACTTGTTACAGGATGTTTTCATATTAACCTTTGACCATTGTAAAGCAGATAGCGTATTTAGTTTCCCTGCTTGATTTGTGTTAATTGTACATTCTGTCAAAAACGAGGGTAGATTTGGGTTTTTGATGTTAAGACTGAAAACAGAGTTTGCTCCTTATTTTGTTAATGTGTCCTGCGtgtaaataatacatgtatgtaCAGGTGTATATGTTTGAAAGATGAGGAAATGCTATATTTTTCTGACCATTTACAGCAGTGAATTCTGAAACAATAAATGTTCTTTCAAAGTCAA

Function

symbol description
phf23a Predicted to enable metal ion binding activity. Predicted to be involved in negative regulation of autophagosome assembly; negative regulation of autophagosome maturation; and positive regulation of protein ubiquitination. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHF23 (PHD finger protein 23).

NR:

description
PREDICTED: PHD finger protein 23A-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239138.1 True 2458 mRNA 0.41 5 10918773 10922782

Neighbor

gene id symbol gene type direction distance location
si:ch211-137i24.12 LOC107744495,LOC107687707,LOC107599977 coding upstream 10416 10904934 ~ 10908357 (+)
znf703 znf703,LOC107599934,LOC107687685,LOC107744445,LOC107726392,LOC107672788,LOC107592299 coding upstream 44681 10870338 ~ 10874092 (+)
tia1l tia1l,LOC107726385,LOC107592301,LOC107672787,LOC107599933,LOC107744444 coding upstream 150142 10762439 ~ 10768631 (+)
trmt2a trmt2a,LOC107687689,LOC107672731 coding upstream 164509 10749401 ~ 10754264 (+)
LOC122345984 si:ch211-106a19.1,LOC107599964,LOC107744438,LOC107730710,LOC107592368,LOC103470291,LOC106959535,LOC107672777 coding upstream 217383 10690779 ~ 10701390 (+)
plscr3a plscr3a,LOC107744496,LOC107599978,LOC107687706,LOC107592298,LOC107726366 coding downstream 88 10922870 ~ 10926030 (+)
eif4a1b eif4a1b,if4a1,LOC107599941,LOC107592294,LOC107726387,LOC107687701,LOC108443969,LOC106560692 coding downstream 11763 10934545 ~ 10941643 (+)
sox19a sox19a,LOC107687705,LOC107744453,LOC107726363,LOC107672743,LOC107599979,LOC107592398 coding downstream 23333 10946115 ~ 10948415 (+)
tm4sf21a si:ch211-137i24.10,LOC107687679,LOC107744498,LOC107672738,LOC107726377,LOC107599980 coding downstream 37558 10960340 ~ 10963604 (+)
mrps31 NA coding downstream 46720 10969502 ~ 10972314 (+)
G35202 NA non-coding upstream 80406 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 102472 10813457 ~ 10816301 (+)
G35081 NA non-coding upstream 371148 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 584965 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 588451 10329889 ~ 10330322 (+)
G35229 NA non-coding downstream 22274 10945056 ~ 11019192 (+)
G35267 NA non-coding downstream 264472 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 281718 11204500 ~ 11209405 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 459888 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 482746 11405528 ~ 11405761 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 182714 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 779040 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 1119415 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 2047255 8864202 ~ 8871518 (+)
snx19a snx19a,LOC107597619,LOC107681657 other upstream 2613327 8289720 ~ 8305446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other downstream 4041 10926823 ~ 10933753 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 123697 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 213441 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 343860 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 715734 11638516 ~ 11652683 (+)

Expression


Co-expression Network