LOC122345238 (cfap157,LOC107587652,LOC107672550,LOC107731015)


Basic Information

Item Value
gene id LOC122345238
gene name cfap157,LOC107587652,LOC107672550,LOC107731015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 17316381 ~ 17321058 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239185.1
GCagagagtaatttttttttactttaaaaaattgtattaagcatttaaaatggcTAAACAACTAAACAAAGCACACTCTATAAGGCTAACACTGTTATAAACCTTATATGAAAATGTCACCCGCGCCAATAAAGCCTATACCTGGAGACTCTTTAAGAATATACAAACTTTAACATATGAATTGCTCATgactttgtaaataaaaatgggaCAGTTTAGGAAATTGCAACAGAGTAATGCAAACTCTGAGAAATATTTTAGGATGTGAACATGAACGATAACAACGAGTCAGTCTTTTTCATaatacatgcagtttttaaactGGTTCTTCATGTATCTTTATAATAACATCCGCTAACTGAAAACTATAAATCTTAAAGTTTacaataaagtcaaaataaagttaCAATATATATCTAAGCTCGAACTAACGCGTGTAAAGCAAACACGGACCTTATATTCAACATTAGAGAAGTGTGTGGAATTAGCAAATGACAGGATAAAGCTCAAGTTTCAGTCAAAAATGAAAGCGAAACGGTGGTTTAAACTCTTTGGATAATATTTTCCACTATTTTTTGGTTTGGAAAGAAGACGTGTGAAAAAGCACAACGCGCTCTCTCGCGCATGTCTGCGCGCGGCGCCTGAACTCAGACATCCATGGCAACAAGAAACAATTGCGTTTGAAAGTTTGTACTTGCGCCGTTTCGTTTAAAGTTGGCCATACGCAAAAGTTCAATGCCCCCTAAAAAGAATGGAAAAGGGACCGGAGATAAATCAGTTAAAAAGGAAAGTATGAATCCTGAGCAGAAAAAAGACGAAGATTTGACGGAGAGTGACAAAAACTTTTATCGGGCTCAAATACGCGATTTGGAGGAGCGACTGGAAAGGTACCAGCATAAATGCGATGAACTGGAGGTTCAGGAAAAGGATTTATACTCTAAGATCAATAATgtggagaaagagaagaaagacaTAGTCCTCTACCTAAAACGCACACTGGCTCAAAAAGAAGATGAACTGATTGATCTGACCGAGACGCtatcaaaacagcagcaagcTCAGGAGGCTGAGAGAGAGTCTTTTGAGTCACAGCTGAGCCTGCTTAGACACGAACTTCAGGAAAACAAGGAAAGGTTCACGTCTGAGAACATGGCACTTGCTGGTAAACTGGCATCTTTAGAGGAGTTTTCTATGCAGAGAGAGAAGCTTATGGCTGAACGCAGGTGTTTGGAAGAGCAGCTTCAAAAGCAAGAAGAAGAACATCAAGCGCAAATCTACAATCTGGAGAAAAAAGCTGTACTGGACAATGACAGgctaaagaaagaaatgctgCAACATGTTGCTGCTGTAGCAGCTGAATTTCGTCGGGTTTCAGATCAGAAGATGCCCGAGACAACAAAGAGAGCCATGCAAGAAAACCTGTCTGTGACAGCGCAACTTCAGCAGCTCTCAGACAAGACCAAGGAGCTGCTGAAGGAGAACAACGATCTGCGAGCGAGAGAAAAGCAACTCAAAATAGAGAACGCCATCAACGAACCGCTGCTACATGAGATAACCAAGAAAAGCGTTGCTAATCAAAAGGTAGTCCATCAGCTGGCAGAAAAGTGCGAGCAGATGCAGTCTGAAGTGGAGAAGTGTACCAAACTTAAAGCGGAGCACCGAGAGCTGCTTGACAGTCACTCTGCGATATGCACAGAGCTCGATGCTCTCAGAAAGAAACATGCAACAGTTACAGAAGTTCTAAACcaaacaaaagctgaaaccaaGACACAGAGAAAAGAGCTTGAGGAGGAAAGGCTGCAAGGACAACAGCTGAAAAAAGTTCTTGAGGAAGCAGCAGCAGCTTTAAAAGAGGCCCTGAGGGAGGTCCCTAAAGAGGAGGACTCACTTCTGAAGGTTACTGTCAGACGAAATCAGATGATGCAGAAACTGCTGGCTGTGTTGGATAGAGCTGCAGATTTAGGAAACGGTCTAGCGCTTGCTGAATTCACGCCGGAGGTGACTGGCAGGCATGATCTCAAAAAAGCCTGTGACATTAAAAGACCAAGCGAACGTCTGCGGAAATCTGCTTCACAGCTTTCTCACTTCAAAACCGGGGATCTGGGATTGGTCCCTCGCCAAACGCACACTACATCATCAAAGACAGGAAGCCTGTCTAAGAGTGCTTTTACCTATGCGCTTAAGAAACAATCAGGTGATAAATGACCGACCTTCTCATTGTCGTACTTGTGACAAGGCAGCTATGTTGATGTAGACCTGTGCCATTTCAATCTACATTGTGTTATGTCCATGTATTGTCACTAGGTGGCGTTGCCGTATCATTATGGACAGATacgtgaactgaaaaaaaagagaaaaaaaataaatgtttcccaTTCTTCGTTCACTAAGTTGTTGAATATCAAACgctaaaatgtttcattttatactAGAGTTATCATGGGGCAAGCATATGAGATTCTGCTTTTATACTACCTACTTAAatgttaatagtaataataattgtttgaaAGATTAGCTGGGTTAATACGGTCCTGTCACCCCTTGCTGGTAGGAGATGGTGTAAATATCCGAGCACGTTCAGGGGTGAACGATAAAAGACATCCCATTTCTCTTTTTGGGTCGCTGGGTGTTTATTTGAAGAAAAGCTTAGTAAAGGTCCGCAGTCCACGGTGCTGGGTAGTAACAGATAAtaagatttaaataattaagtacATGTAAATAGCttcaatcacattttaatatacgtGTAATTAGTCCACAGTTAAGTAcatgattatttattgttaacaCAATAGCGATAGATGATTCAGAATTCGAAAAGTTCCTTTCGAAAGTTGACCTACACTCGGAAATTCTTCCGGTTCTGGGAACTTTACACAAAGACCAGTCGTCAGTCAAGACTGCTTATTATAGTtggattatatattattaattattta

Function

symbol description
cfap157 Predicted to enable microtubule binding activity. Predicted to be involved in sperm axoneme assembly. Predicted to act upstream of or within cell differentiation and spermatogenesis. Predicted to be located in cilium; cytoplasm; and cytoskeleton. Predicted to be active in ciliary basal body. Orthologous to human CFAP157 (cilia and flagella associated protein 157).

NR:

description
PREDICTED: uncharacterized protein C9orf117 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239185.1 True 2942 mRNA 0.40 9 17316381 17321058

Neighbor

gene id symbol gene type direction distance location
LOC122344899 LOC107663257,LOC107742022,LOC107570120 coding downstream 56434 17258466 ~ 17259947 (-)
LOC122344715 vps37b,LOC107673398,LOC107594993,LOC107656485,LOC107587312,LOC107709855,LOC107721558 coding downstream 900376 16413057 ~ 16416005 (-)
si:ch211-204c21.1 LOC107746847,LOC107561610,LOC107680600,LOC107719926,LOC107660265,LOC107553608 coding downstream 1178218 16115390 ~ 16138163 (-)
LOC122346134 LOC107681310 coding downstream 1201957 16095748 ~ 16114424 (-)
mccc2 mccc2,LOC107746845,LOC107680610,LOC107552565,LOC107660263,LOC107553609,LOC107719925 coding downstream 1221044 16089065 ~ 16095337 (-)
LOC122344736 apba1,apba1a,LOC107587500,LOC107720269,LOC107756314,LOC107567151 coding upstream 8138 17329196 ~ 17345615 (-)
LOC122345546 LOC107699749,LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200 coding upstream 33871 17354929 ~ 17359741 (-)
LOC122344712 ckmt2b,ckmt2,LOC107720280 coding upstream 60973 17382031 ~ 17384148 (-)
ccnh ccnh,LOC107753181,LOC107553924,LOC107720191,LOC107660965 coding upstream 265765 17586823 ~ 17592357 (-)
tmem161b tmem161b,LOC107720188,LOC107660970,LOC107669514,LOC107753179,LOC107553926 coding upstream 295155 17616213 ~ 17632162 (-)
G37340 NA non-coding downstream 151229 17162677 ~ 17165152 (-)
G37310 NA non-coding downstream 425191 16890704 ~ 16891190 (-)
G37309 NA non-coding downstream 426063 16889042 ~ 16890318 (-)
LOC122345772 NA non-coding downstream 457405 16858600 ~ 16858976 (-)
G37296 NA non-coding downstream 490155 16825784 ~ 16826226 (-)
G37363 NA non-coding upstream 30257 17351315 ~ 17352410 (-)
LOC122345155 NA non-coding upstream 325038 17646096 ~ 17686024 (-)
G37427 NA non-coding upstream 347201 17668259 ~ 17692145 (-)
G37439 NA non-coding upstream 570899 17891957 ~ 17893318 (-)
G37453 adgrv1,LOC107669515,LOC107660972 non-coding upstream 625489 17946547 ~ 17946764 (-)
LOC122345693 NA other downstream 456450 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 603214 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 683260 16596855 ~ 16633121 (-)
LOC122344728 uprt,LOC107733222,LOC107672530,LOC107680369,LOC107748634 other downstream 937866 16376266 ~ 16378515 (-)
LOC122344710 LOC107755722,LOC107681456,LOC107700059,LOC107553585,LOC107727439 other downstream 1059389 16253952 ~ 16256992 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other upstream 25411 17346469 ~ 17350380 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other upstream 1854405 19175463 ~ 19183978 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 2543961 19865019 ~ 19935576 (-)
G38058 NA other upstream 2730601 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 2804531 20125589 ~ 20127390 (-)

Expression


Co-expression Network