fam78ab (fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938)


Basic Information

Item Value
gene id fam78ab
gene name fam78ab,fam78a,LOC107704739,LOC107562331,LOC107674928,LOC107745627,LOC107741498,LOC107597938
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 29838639 ~ 29846990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239186.1
GCTGATGCGGTGACGCGCACAGCGCTGCGGGACGGAGGCTGAGCGCAGCGGCGGCGCTAGGATGAGGATGGATTATAACTGATGAAGAGAGACGAGCAATGATGGGCTGTTCATCACATCATGTGTGTTCGTGACAGCCGGACTGTTTTATTCACCTCTCATGTTTATTCACGTGGGGTTGGTGAAGTTCACCTGATGCTGAGACGGATCGACTACTCATAAGTGCACAAGAAAGTGAGCTTCCTCCAACTGAACCTCAAGGACAAACTCACGGAATGTAAATATTCTTCGCGGAAAATCACTTTTCCAGCGTTACTTTCGATACCCAACGCGTGCATAGCTATTTCGCGCGCTTGTAGTTGAagatctctctttttttgcgTACAAAATGCCAGCATTATTCTGAGCGGATGGATTTaacctatttattttaatctaaaagaAGCGATGTTGTGAGAGTTATGACGCGGAAATTCCCGTTTGACGATGACTGGAGAACGTTATGTGTGAACGGAGCGTTATAACGGTCCGCCAATGACGGAAAGTTGACGAacgttgtttttatttattttcttttgttttatttcaatcttCAACAGAATAACGCGATGCTTTTGTTAATAGGACGCGTTTTATCTAGTCCTGACGCGACACCGCGACGCGTCGTTTAATGTCTTCTGAGGGACGGTAGTGTGCGTTATTCAGAGAGACAGCGTCTGGCGTGCGTTCCTCAGAGGTTCAGTGTGTAGTGTGCTTTCTTCTGAGGGACAGCGTATAGTGTGCGTTCTTCTGAGGGACAGAGGGTATAGCGTGCGTTCTTCTGAGGGACAGCGGGTATAGCGTGCGTTATTCCGAGGGTCAGTGTGTGTAGTGCGCGTTCTTCTGAGGGTTGATGTTCTGCTGGCCGCTCGTGCTGGTTGTGATGGGCTGTATTCAGAGCATCAGATGCAAACCCAAGAGTTTCCGGGACAGTATCATGGTTCTGGAGGTGAACTCCTCCATCGACTCGAACCCCACCAGCATCGACGAGTCCTCCAGCGTTGTGCTGCGCTACCGCACGCCGCATTTCCGCGCGTCCGCCAGGGTACTTGTGCCGCCGGTGGCCGGTAAAGAGAGCTGGACGATCGGCTGGATCCAGGCGTGCAACCACATGGAGTTTTACAACAAATACGGATCCAAAGGGATGTCCAGCTGGGAGCTGCCAGACCTCAGAGAAGGAAAAATCCAAGCCATCAGCGACTCAGACGGCGTCAACTACCCCTGGTACGGCAACACCACCGAGACCTGCACCATCGTGGGTCCCACCAAGAAGGACACCAAGTTCACCGTCAGCATGAACGACAACTTCTACCCCAGCGTGACGTGGGGCGTCCCGGTGAGCGACAGCAACGTGCCCATGCTCAGCAGCATCTGGAGGGACCAGAGCTTCACCACCTGGCTGGTGGCCATCAACCAGGCGTCCGGCGAGATCCTGGTGCTGCAGACGGTGCGCTGGCGCATGCGTCTGCACATCGAGGTGGATCCGGACAAGCCGCTGGGACAGAGAGCCAGGCTTTGCGAGCCCATCTCCCAGGAGCAGCCGCAGGTGCTGGGCAAGAACGAAGCCATCCCGCCCAACGCCATGGTCAAACCCAACGCCAACGACGCTCAGGTGCTGATGTGGCGTCCGCGGACGGGCGAGCCGGTGGTGGTCATCCCTCCCAAACACTGAGACCAAAACCGGTCAGGAATCACTGTGCTAAACGCCGCTGCAAAAAGACAAAGTTGGGAATACTGCGTCTCGGAAAGAGCGTTCACGCTGCCTTAAGTTTACATTGCTTCCACTGCAAACGTTTCGCCTTAAACCAAGTGAAATGCAGTAAACCTCGCGCGTTCTACCTGTCTGTAGATTTGCACTGGATGTGTCCCAGTTAGTCGCGGTCTAACGGGACCGCGATGACCGCCGCACGCCCAACCAAACGAGGACACGGTCATTATGCATTCAGTGTTTTCAGCAGGAGCTTCAGTGTTTTAGTTTTCTGTCAACCAGCCACTTCCAGTGTGTTTTACAAGAGCCGAGagtccaaaaatatatatcttttctaCTACATGTGAGTTTGCCGTGTCAGTCAGTGTCAAGACGTCGTGGCCAATCGATAGAGCGAATGCGCAAAAACCATCCCTTCTCCCGGTGTTTGAATGAGACGCGTGTGTGCGGCGACAGGGGCACTGAACGCTGCATCTGCTCTCAAATCGATCTGCTCCTCAAATCAAACACCATCAGCAGAAGCTGAAGGGAGAAACGTGTTGTTCCCGAACGAACGCGTTGAGAAAGCACGTGTCCAGGCCACAATTCTGCACAAGAACTAGACGTTATTTTCATGGCAGTGCTACAGATATGAGCGTAACGTACCTCAAAAGTTGGaaatgatttttagcattttttgaaagagctgctcaccaaggctgcatttatttgatcgcaaatgcaataaaaaagcaactgtttaatgtgtgaaaaagggaagaaattaatacttttatttaataaaagagacaatttctgtttcaaataaatgctgttttctttactttctattcatgtgtgaatcctgaaaaaagatGTATCATGGTTTTCTACAAAACtactgataataatcataagTGTTTAGAATATAATTAGAATacagatttctgaaggatcccgTGACGCTGaagattaatattaatgaaagacACTAACGGCTGACAGTAATGCTGACAAGTCAGCTttttcacagcaataaattacattttaacaagtcaaattttattttatcaaataaaaacaactattcTAAAcgttaatatttcacagtttttcctgtatttttaaaaataaatgcagacttggtgagcagaagagacttctttgaAAAATCTCAATAcgttccaaacttttgaccagtagTGTGTAAATAACgcgtttttataatatatttttttgcattgcagtgTTGAACATTTGAAGGCGGATCTGCTTGACATTCGTGCAAATGACAATTAAGCACAATTTTTATCCATTCTGCAACTCAAGATAAAATGCACTTCAGCGCTTCCTGATGCCATGTGTTATTGACCCATCGAAGGCCTTATTACACTGAGATGTGATTGTGTTGACGGACAGATGAGCGTTGATGTGATTCAGTCAAACGCTGACCAGCATTTATACGCGCACAAGGATCCAACACCACGACTGACACTGAGCTTTACGTCCATCTTCATCAGCGCTGGACGGCCAGAGACTCGTGTGTGTTTCATTTCATCAGACGCTTAAGTTAATCTTGTGTGTTTGATCTGCTCACGTGATGCGAgtctgcaggtgtgtgtgtgtgtgtgtttggacgCGTATACACAACATTACCGAAGAACTTTAGTTCAGACTTCTGATATACTTCCGGCAGACTTTTATTTATCACCAgatcaaaattaaatgtttgtgttcAAGTCAAAACTCTCACATCCTGCTGTGAACAGACACATTACGACATCTTACAGacaataaattcataataaatcCTCCAATCATTTAGTTCTGGATATGAAATAGTAACACTGAATCCCTGCAGCTCCATTAGCAACATGTTTATACTGGgagtgtgtgcgagagagagcgagtgtgtgtgtgtgtgtgtgtgcgtgaggcGTCAGACTCGTTTTTCGCTTTCTCTTTTCAGAAGGTACGATGGGATTTCGGGCCGTTTTATAGCTTGACAATAATACTTGAAAAACAGACGTGGGAAACATTTCAAACTGTGAAGATGCACATTGTGAGAACGAAACGTTCAAAGACAGCTGAATTTTTCATGAAGAATACAATAAAACTGTGAGATTCA

Function

symbol description
fam78ab Orthologous to human FAM78A (family with sequence similarity 78 member A).
fam78a Orthologous to human FAM78A (family with sequence similarity 78 member A).

NR:

description
protein FAM78A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239186.1 True 3854 mRNA 0.46 2 29838639 29846990

Neighbor

gene id symbol gene type direction distance location
gpsm1b LOC107741501,LOC107704761,LOC107562333,LOC107597941,LOC107674924,LOC107744057 coding downstream 140013 29673233 ~ 29698626 (-)
ak1 ak1,kad,LOC107704768,LOC107715674,LOC107674927 coding downstream 168454 29661018 ~ 29670185 (-)
LOC122345545 LOC107728794,LOC107590009,LOC107696375,LOC107696371,LOC107578696,LOC108263699 coding downstream 502951 29325983 ~ 29335688 (-)
LOC122345544 ubr2,LOC107669566,LOC107696377 coding downstream 514954 29303143 ~ 29323685 (-)
brinp1 brinp1 coding downstream 567939 29174951 ~ 29270700 (-)
prrc2b prrc2b,LOC107704672 coding upstream 12562 29859552 ~ 29880103 (-)
LOC122344958 LOC107690080,LOC107566862,LOC107728455 coding upstream 63922 29910912 ~ 29919495 (-)
sapcd2 LOC107742165,LOC107660368,LOC107565658 coding upstream 81833 29928823 ~ 29943177 (-)
LOC122344964 LOC107721044,LOC107563395,LOC107558067 coding upstream 120417 29967407 ~ 29970909 (-)
LOC122344968 mob3b,LOC107558072,LOC107563392,LOC107721040,LOC108414757 coding upstream 150446 29997436 ~ 30005969 (-)
G40268 LOC107741500,LOC107562332,LOC107704753 non-coding downstream 32837 29801194 ~ 29805802 (-)
G40266 NA non-coding downstream 152912 29685128 ~ 29685727 (-)
G40264 NA non-coding downstream 191626 29646617 ~ 29647013 (-)
G40083 NA non-coding downstream 1508163 28326897 ~ 28330476 (-)
G40081 NA non-coding downstream 1545702 28292726 ~ 28292937 (-)
LOC122344857 NA non-coding upstream 192464 30039454 ~ 30046148 (-)
LOC122345788 NA non-coding upstream 206622 30053612 ~ 30054797 (-)
G40422 NA non-coding upstream 258852 30105842 ~ 30106738 (-)
G40418 NA non-coding upstream 269418 30116408 ~ 30117863 (-)
G40654 NA non-coding upstream 450404 30297394 ~ 30419407 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 183578 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 348435 29460585 ~ 29490204 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other downstream 512524 29323982 ~ 29326115 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other downstream 1573935 28255828 ~ 28264704 (-)
LOC122344874 NA other downstream 1943185 27886041 ~ 27895454 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other upstream 77712 29924702 ~ 29928675 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other upstream 240976 30087966 ~ 30093576 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other upstream 743853 30590843 ~ 30613141 (-)
G40711 NA other upstream 784038 30631028 ~ 30733360 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 942643 30789633 ~ 30792719 (-)

Expression


Co-expression Network