LOC122345240 (rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272)


Basic Information

Item Value
gene id LOC122345240
gene name rab5aa,LOC107592022,LOC105904716,LOC101476881,LOC100701272
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1878085 ~ 1880008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239187.1
ttttttggtTACATGTTGTCCTGCGCAGCCAGTACTGGGACagctctcagtgtgtgtgtgaccactTAAAGGAGACGGGGTGATTGACGACTGTCATGGCCAATAGGGGAGGAGCAACACGCCCCAACGGGTCCAACGCGGGCAATAAGATCTGCCAGTTTAAACTGGTCTTGCTAGGAGAGTCGGCTGTGGGAAAGTCCAGCCTCGTACTGCGCTTCGTCAAAGGGCAGTTTCATGAGTTTCAGGAAAGCACAATAGGAGCGGCCTTCCTTACACAGACAGTGTGCTTGGATGACACAACGGTAAAGTTTGAGATTTGGGACACAGCCGGACAGGAGCGCTACCACAGTTTGGCCCCTATGTACTATAGAGGGGCCCAGGCTGCCATTGTAGTTTATGACATCACCAATGAGGAGTCGTTTGCAAGAGCAAAGAACTGGGTTAAGGAGCTTCAGAGGCAGGCCAGTCCGAATATTGTCATCGCGCTGTCTGGGAACAAGGCTGACCTTGCCAACAAGAGAGCTGTGGACTTCCAGGATGCTCAGTCTTATGCAGATGACAACAGTTTGTTGTTCATGGAGACGTCAGCAAAGACTTCCATGAATGTCAATGAGATCTTCATGGCCATTGCGAAAAGGTTGCCCAAGAATGAGCCCCAAGCCGCCGGAGCCAACAGTGGGCGGAGTAGGGGCGTGGACCTCACAGAGACAGCCCAACCCACTAAGGCCCCCTGCTGCAGTAactaacacaaaacaaatccCCCCTCACCAAACTCTGTTACCGCAACAACTAACGCAAGGTCCCGCCCTCCAACTTGGTTTTTGACTAACTAATGAAATGCCTCCGCTTTCCCCGTTTTCCACAACTCTCTTACGCTGTAACAAAAGCTCTGCCCCGCCCATGTATCTgcggtgtttttgttttgttgttcttcTGTAAAGACCCAGGCCTCTTACTGTATTCATGCTTAAGGTCATGCCTTGTCTCCATACTGTAATATATGCCGTCACAGATAtccatcagaaaaaaaaaaaagaaaagaaaaaaatctttgaatgCCATTTGCCTGACCTGGACGAAAAGGGGTGGGGCCTCTGCGAGGGTTCACCTGCCCAGTCATAATTCAGAACTCTACAGTCGCTTCTTTTT

Function

symbol description
rab5aa Predicted to enable GTPase activity. Predicted to be involved in several processes, including regulation of endocytosis; regulation of filopodium assembly; and regulation of long-term neuronal synaptic plasticity. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Is expressed in brain and trunk. Orthologous to human RAB5A (RAB5A, member RAS oncogene family).

NR:

description
RAB5A, member RAS oncogene family, a

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239187.1 True 1149 mRNA 0.50 5 1878085 1880008

Neighbor

gene id symbol gene type direction distance location
LOC122346048 prodhb,prodha,LOC107730849,LOC107704395,LOC107661597,LOC106568196 coding upstream 2037 1865595 ~ 1876048 (+)
LOC122346045 ddr2l,LOC107704361,LOC107550294,LOC107725118,LOC107667359,LOC107723312 coding upstream 13379 1851607 ~ 1864706 (+)
sec14l8 sec14l8,LOC107741494,LOC107599607,LOC107668747,LOC107704732,LOC107755846,LOC107599126,LOC108431737,LOC108255515 coding upstream 57528 1806950 ~ 1820557 (+)
tctn2 LOC107704714,LOC107741513,LOC107599155 coding upstream 72044 1796834 ~ 1806041 (+)
ccl19a.1 LOC107704652,LOC107741512 coding upstream 81647 1794534 ~ 1796438 (+)
LOC122345241 kat2b,LOC107748684,LOC107696888,LOC107593605,LOC107592021,LOC107739562,LOC107688328,LOC108411559 coding downstream 2007 1882015 ~ 1892104 (+)
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding downstream 19587 1899595 ~ 1900425 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding downstream 26919 1906927 ~ 1917452 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding downstream 298575 2178583 ~ 2207545 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding downstream 369650 2249658 ~ 2264585 (+)
G32552 NA non-coding upstream 92443 1785401 ~ 1785642 (+)
G32542 NA non-coding upstream 111195 1766596 ~ 1766890 (+)
LOC122346170 NA non-coding upstream 112678 1762921 ~ 1765407 (+)
G32540 NA non-coding upstream 115803 1762005 ~ 1762282 (+)
G32539 NA non-coding upstream 116114 1761564 ~ 1761971 (+)
G32643 NA non-coding downstream 78110 1958118 ~ 1958584 (+)
G32644 NA non-coding downstream 86171 1966179 ~ 1966378 (+)
G32646 NA non-coding downstream 111541 1991549 ~ 1993168 (+)
G32642 NA non-coding downstream 116012 1996020 ~ 1997056 (+)
G32649 NA non-coding downstream 118171 1998179 ~ 1998680 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 35072 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 51971 1822654 ~ 1826114 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other upstream 84819 1791828 ~ 1793266 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 762680 1112264 ~ 1115405 (+)
G32277 NA other upstream 820932 1055193 ~ 1057153 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 20619 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 130209 2010217 ~ 2019150 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other downstream 385137 2265145 ~ 2268194 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 747076 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 1448792 3328800 ~ 3343070 (+)

Expression


Co-expression Network