loxl2b (loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858)



Basic Information


Item Value
gene id loxl2b
gene name loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9535533 ~ 9558371 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043239197.1
ATTGTAGGAGATCAACCAGTGAAAGTTTAGGGGATGTGCAACAGCTGAGAGAAGCAGAGAGTCACATTCGGAGGACTATTCCACTGTGAAACTTGCACCCGCAGCGAAAGCCATAAAAACCTGAGCCTCTGTCATTATGCTGGCCCTCTGGTCTGTGTCATTTGTACTATTGTGCATATGCAGATTGAGTGACGCACAGTATGAGCACTTGGGTTACTTCCCTGGCTACCAAGACCCTGCACAGGAACTTTATACTGCTCCTGAGCTTCCTAAAGATATACCCAGGATACAGCTACGTCTGGCGGGAGAGAAACGCAAGCACAATGAAGGCCGTGTTGAGGTGTTCTATGAAGGGGAATGGGGGactgtgtgtgatgatgatttCACCATACATGCAGCCCAAGTTGTATGCAGAGAACTGGGTTATTCTGAAGCAGTCTCCTGGTCTCCATCATCTAAATATGGAAAGGGAGAAGGCCGAATCTGGTTTGACAACGTCCACTGCACAGGGAACGAAAAGAGCTTGGCCCAGTGTGAGTCTAATGGCATAGGCGTCTCTGATTGTAAGCATACTGAGGATGTCGGGGTGGTTTGCAGCGACAAGAGAATCCCAGGATTCAAGTTCGTTAACACTCTTACCAACAACATCAATAGTCTAAACATTCAGGTGGAGGATGTTCGTATACGGCCAATTCTGTCGTCATATCGTAAGCGCATCCCAGTGACAGAGGGCTATGTGGAGGTGAAAGATGGAGGCAAGTGGAAGCAGATTTGTGATGATGAGTGGACTCATATGAACAGCAGGGTTATCTGTGGCATGTTCGGCTTTCCTGGAGACAAGAAATACAATACTCGTGTGTACAAgatgTTTGCCCGCCGGAGAAAGCCAACATACTGGGATTACTCCATAAACTGCACCGGAAATGAAGCTCATTTGTCTAGCTGTAAGCTGGGCCACACGCTCGCCATTAAAGCCAATAGCACGTGTGCGCAGGGCACTCCTGTGGTAGTCAGCTGCGTCCCTGGCAGAGCTTTCGCCCCGACTCCCATGGCAGGATACAGGAAGGCCTTCAGACAGGAGCAGCCCCTGGTGCGTCTCAGAGGCGGTGCTGTAGTTGGAGAGGGGCGTGTGGAGGTGTTGAAAAATGGAGAATGGGGCACGATCTGTGATGACAACTGGAATCTCGTAGCAGCTACTGTGGTGTGCCGTGAGCTTGGATTTGGGAGTGCCAAAGAGGCGCTTTCTGGAGGTCAACTTGGACAAGGAATGGGCCCTGTACATATGAATGAAGTCACATGTTCTGGCTTTGAGAAGTCGGTCACTGAGTGCCCCTTCAACATGGACAAAGATTCTGAAGGCTGCAGTCATGAGGAAGACGCAGGCGTCAGGTGCAATGTTCCTGCCATGGGCTTCCAACAGAGGCTGCGTTTGAGTGGCGGTCGTAACCCCTTTGAAGGCCGCGTGGAGGTTTTAATGGAGCGCAACGGTTCTCTGGTGTGGGGGACTGTATGTGGTGAGGGCTGGGGTACTATGGAGGCCATGGTGGTCTGCAGACAGCTGGGCCTGGGCTTCGCGAGCCATGCTTTCCAGgAGACATGGAACTGGCCCGGTGCAGTGAATGCAGATTCAGTGGTAATGAGTGGGGTGAGGTGTGCAGGGACAGagatgtctctctctcactgtctgcACCATGGAGAATATTTCAGCTGCCCTAGAGGTGGAGGACGCTTTGCTGCTGGAGTGTCCTGCTCTGAGACTGCTCCAGATCTAGTGCTCAACCCCCAGGTGGTGGAACAGACTACATACTTAGAGGATCGTCCTATGTTCATGTTACAGTGCGCCTATGAGGAGAACTGCCTGGGATCCACTTCCAGTTCCACTCCAGCCAACTCCTATCGCCGACTCCTCCGGTTCTCCTCTCAGATCCACAACAATGGCCAGTCTGACTTCAGACCCAAAGCCTCCAGAGAGACCTGGGTTTGGCATGACTGCCACAGaCACTATCATAGCATGGAAGTATTCACCCACTATGACCTACTTAGCAACAATGGCACCAAGGTGGCAGAGGGACACAAAGCAAGCTTTTGTCTGGAGGACTCAGAATGTGATGAAGGAATTGAAAAGCAGTACGAGTGTGCAAACTTTGGTGAGCAGGGGATCACGGTGGGCTGCTGGGATACATACAGGCATGATATTGACTGCCAGTGGGTGGACATTACAGACGTTAAACCAGGAGACTACATATTCCAGATCATAATTAACCCCACTTATGAGGTTGCTGAGTCAGATTACACCAATAACATTGTGAAATGCAGATGTCGATATGATGGTCATCGCATATGGATGTATAATTGCCATATAGGGGGCTCCTTTAGTGCAGAGACAGAAGACACCTTTCCTGGCCTGATTAACAACCAGGTGACCCACAGGTAAAAAAGCGGAGCTGAAGAACTTCCAGAAACCGCGGCCCAACCAGTGAGATCATCAAGAGCCCTGAACCACTACACCTCTCTAGAGGACCTTTCATCTCTCAGCAGTGATTCCATGGTACTCTTTCAACTATGCTCAGCGTCACCACATAGCCAGCACAGTCCTCTACTGTATTACAGGACTgaacatcactttttttttaaattgagaacTCAGACTTGAGACAGGAACTGACTCTGAAAACAGCTCTTTGGCTGAGGTTTACAGACTGAAATTCCCTCTCACCGCTGAGCCCGTAGCAATTCTAAAACCTCATTCTTTCTCTGTTTGCTGCTGGTGTTGAAGATGAAACTGTGGATTAACTCTCAAGTGAGCTCACTTCAGACATGAAAGGAACTctggtgcacttttttttttttttttaaattgacaggACTTGTGGTTTAGGTCTTTTTGATAAGGTGAGAGGACTCCTCACTTGAGTCGTTTAAAAGAATATTACAGATCTACAGAAAAATAAAGGCCTGAAGAGAGACTGTTTCCTTTTTTAGTGTCATGCATTTTAGCTATATACTTTGACATTTCGAAAACTAAGCTGATGACTTCTGCTTATGGATATTATTGGTTATTATTTAAGTACCTTTTATAGGTTAGTAGTGGAAACACCTGATGCATTAGAGAGATATAATGAGCCTTACGATATTTTCTATCAGTGTccaattttaaaagtattttcagaATTGCAGTGTAAGAAAACTTTGAATATTGCCAGTAAACTTCCAGTTCAGATCAGCTGTTCATAAACACTGGCATCCTAGAAGCAGGTGAGGAACCCATGCAAACTCtaatattagttttgttttgttttttccccccacccTGGTCttgttgttattttgaattgacTGACAGTGGACAaacaattatgaattatttatgctAACTCTATTGAATCTGACTGGAAACATCACAAGCAGTCTGATCCTTTCCAACAATTCATACAagaatattcataatatttgcaagcattaaataacttattttaagaCAGGGATTTCAGATGCTATTTCatagtttctttgtttttcaatgTGGAATGTCTTTTCATTTGTTGTCTGTCAATGGTGCTAACagtgttatcctctgttttttGAGGGACCATATCAGctaattttttattatgcttactTGAATGGATGTAAAAATCGTGGATGTATGCGATGTAGCGTAATAAACTTGCATTATttgg
>XM_043239198.1
ATTGTAGGAGATCAACCAGTGAAAGTTTAGGGGATGTGCAACAGCTGAGAGAAGCAGAGAGTCACATTCGGAGGACTATTCCACTGTGAAACTTGCACCCGCAGCGAAAGCCATAAAAACCTGAGCCTCTGTCATTATGCTGGCCCTCTGGTCTGTGTCATTTGTACTATTGTGCATATGCAGATTGAGTGACGCACAGTATGAGCACTTGGGTTACTTCCCTGGCTACCAAGACCCTGCACAGGAACTTTATACTGCTCCTGAGCTTCCTAAAGATATACCCAGGATACAGCTACGTCTGGCGGGAGAGAAACGCAAGCACAATGAAGGCCGTGTTGAGGTGTTCTATGAAGGGGAATGGGGGactgtgtgtgatgatgatttCACCATACATGCAGCCCAAGTTGTATGCAGAGAACTGGGTTATTCTGAAGCAGTCTCCTGGTCTCCATCATCTAAATATGGAAAGGGAGAAGGCCGAATCTGGTTTGACAACGTCCACTGCACAGGGAACGAAAAGAGCTTGGCCCAGTGTGAGTCTAATGGCATAGGCGTCTCTGATTGTAAGCATACTGAGGATGTCGGGGTGGTTTGCAGCGACAAGAGAATCCCAGGATTCAAGTTCGTTAACACTCTTACCAACAACATCAATAGTCTAAACATTCAGGTGGAGGATGTTCGTATACGGCCAATTCTGTCGTCATATCGTAAGCGCATCCCAGTGACAGAGGGCTATGTGGAGGTGAAAGATGGAGGCAAGTGGAAGCAGATTTGTGATGATGAGTGGACTCATATGAACAGCAGGGTTATCTGTGGCATGTTCGGCTTTCCTGGAGACAAGAAATACAATACTCGTGTGTACAAgatgTTTGCCCGCCGGAGAAAGCCAACATACTGGGATTACTCCATAAACTGCACCGGAAATGAAGCTCATTTGTCTAGCTGTAAGCTGGGCCACACGCTCGCCATTAAAGCCAATAGCACGTGTGCGCAGGGCACTCCTGTGGTAGTCAGCTGCGTCCCTGGCAGAGCTTTCGCCCCGACTCCCATGGCAGGATACAGGAAGGCCTTCAGACAGGAGCCCCTGGTGCGTCTCAGAGGCGGTGCTGTAGTTGGAGAGGGGCGTGTGGAGGTGTTGAAAAATGGAGAATGGGGCACGATCTGTGATGACAACTGGAATCTCGTAGCAGCTACTGTGGTGTGCCGTGAGCTTGGATTTGGGAGTGCCAAAGAGGCGCTTTCTGGAGGTCAACTTGGACAAGGAATGGGCCCTGTACATATGAATGAAGTCACATGTTCTGGCTTTGAGAAGTCGGTCACTGAGTGCCCCTTCAACATGGACAAAGATTCTGAAGGCTGCAGTCATGAGGAAGACGCAGGCGTCAGGTGCAATGTTCCTGCCATGGGCTTCCAACAGAGGCTGCGTTTGAGTGGCGGTCGTAACCCCTTTGAAGGCCGCGTGGAGGTTTTAATGGAGCGCAACGGTTCTCTGGTGTGGGGGACTGTATGTGGTGAGGGCTGGGGTACTATGGAGGCCATGGTGGTCTGCAGACAGCTGGGCCTGGGCTTCGCGAGCCATGCTTTCCAGgAGACATGGAACTGGCCCGGTGCAGTGAATGCAGATTCAGTGGTAATGAGTGGGGTGAGGTGTGCAGGGACAGagatgtctctctctcactgtctgcACCATGGAGAATATTTCAGCTGCCCTAGAGGTGGAGGACGCTTTGCTGCTGGAGTGTCCTGCTCTGAGACTGCTCCAGATCTAGTGCTCAACCCCCAGGTGGTGGAACAGACTACATACTTAGAGGATCGTCCTATGTTCATGTTACAGTGCGCCTATGAGGAGAACTGCCTGGGATCCACTTCCAGTTCCACTCCAGCCAACTCCTATCGCCGACTCCTCCGGTTCTCCTCTCAGATCCACAACAATGGCCAGTCTGACTTCAGACCCAAAGCCTCCAGAGAGACCTGGGTTTGGCATGACTGCCACAGaCACTATCATAGCATGGAAGTATTCACCCACTATGACCTACTTAGCAACAATGGCACCAAGGTGGCAGAGGGACACAAAGCAAGCTTTTGTCTGGAGGACTCAGAATGTGATGAAGGAATTGAAAAGCAGTACGAGTGTGCAAACTTTGGTGAGCAGGGGATCACGGTGGGCTGCTGGGATACATACAGGCATGATATTGACTGCCAGTGGGTGGACATTACAGACGTTAAACCAGGAGACTACATATTCCAGATCATAATTAACCCCACTTATGAGGTTGCTGAGTCAGATTACACCAATAACATTGTGAAATGCAGATGTCGATATGATGGTCATCGCATATGGATGTATAATTGCCATATAGGGGGCTCCTTTAGTGCAGAGACAGAAGACACCTTTCCTGGCCTGATTAACAACCAGGTGACCCACAGGTAAAAAAGCGGAGCTGAAGAACTTCCAGAAACCGCGGCCCAACCAGTGAGATCATCAAGAGCCCTGAACCACTACACCTCTCTAGAGGACCTTTCATCTCTCAGCAGTGATTCCATGGTACTCTTTCAACTATGCTCAGCGTCACCACATAGCCAGCACAGTCCTCTACTGTATTACAGGACTgaacatcactttttttttaaattgagaacTCAGACTTGAGACAGGAACTGACTCTGAAAACAGCTCTTTGGCTGAGGTTTACAGACTGAAATTCCCTCTCACCGCTGAGCCCGTAGCAATTCTAAAACCTCATTCTTTCTCTGTTTGCTGCTGGTGTTGAAGATGAAACTGTGGATTAACTCTCAAGTGAGCTCACTTCAGACATGAAAGGAACTctggtgcacttttttttttttttttaaattgacaggACTTGTGGTTTAGGTCTTTTTGATAAGGTGAGAGGACTCCTCACTTGAGTCGTTTAAAAGAATATTACAGATCTACAGAAAAATAAAGGCCTGAAGAGAGACTGTTTCCTTTTTTAGTGTCATGCATTTTAGCTATATACTTTGACATTTCGAAAACTAAGCTGATGACTTCTGCTTATGGATATTATTGGTTATTATTTAAGTACCTTTTATAGGTTAGTAGTGGAAACACCTGATGCATTAGAGAGATATAATGAGCCTTACGATATTTTCTATCAGTGTccaattttaaaagtattttcagaATTGCAGTGTAAGAAAACTTTGAATATTGCCAGTAAACTTCCAGTTCAGATCAGCTGTTCATAAACACTGGCATCCTAGAAGCAGGTGAGGAACCCATGCAAACTCtaatattagttttgttttgttttttccccccacccTGGTCttgttgttattttgaattgacTGACAGTGGACAaacaattatgaattatttatgctAACTCTATTGAATCTGACTGGAAACATCACAAGCAGTCTGATCCTTTCCAACAATTCATACAagaatattcataatatttgcaagcattaaataacttattttaagaCAGGGATTTCAGATGCTATTTCatagtttctttgtttttcaatgTGGAATGTCTTTTCATTTGTTGTCTGTCAATGGTGCTAACagtgttatcctctgttttttGAGGGACCATATCAGctaattttttattatgcttactTGAATGGATGTAAAAATCGTGGATGTATGCGATGTAGCGTAATAAACTTGCATTATttgg

Function


symbol description
loxl2b Predicted to enable calcium ion binding activity; copper ion binding activity; and protein-lysine 6-oxidase activity. Predicted to be involved in several processes, including collagen fibril organization; peptidyl-lysine oxidation; and positive regulation of cell differentiation. Predicted to act upstream of or within chromatin organization. Predicted to be located in several cellular components, including basement membrane; chromatin; and endoplasmic reticulum. Predicted to be active in extracellular space. Is expressed in diencephalon; head mesenchyme; hindbrain; notochord; and pectoral fin. Orthologous to human LOXL2 (lysyl oxidase like 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0032332 positive regulation of chondrocyte differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0030199 collagen fibril organization biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0001666 response to hypoxia biological_process
GO:0043542 endothelial cell migration biological_process
GO:0005604 basement membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043239197.1 True 3680 mRNA 0.46 14 9535533 9558371
XM_043239198.1 False 3677 mRNA 0.46 14 9535533 9558371
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Neighbor


gene id symbol gene type direction distance location
sfrp1a LOC107587465,LOC107721541,LOC107659285,LOC107709857,LOC107673425,LOC107594997 coding downstream 17020 9508637 ~ 9518513 (-)
zmat4a zmat4a,zmat4,LOC107594996,LOC107587306 coding downstream 40883 9430925 ~ 9494650 (-)
adam28 LOC107673423,LOC107709852,LOC107594994,LOC107656497,LOC107721555 coding downstream 153656 9372014 ~ 9381877 (-)
ogfod2 ogfod2,LOC107673403 coding downstream 215928 9316654 ~ 9319605 (-)
tacr1a tacr1a,tacr1,LOC107673353,LOC107594990,LOC107709848,LOC107656492,LOC107721554,LOC107587419 coding downstream 259981 9248321 ~ 9275552 (-)
LOC122345251 histh1l coding upstream 3554 9561925 ~ 9563296 (-)
zgc:153409 LOC105896809,LOC106958509,LOC103460788,LOC103154043,LOC107671222 coding upstream 7108 9565479 ~ 9565932 (-)
LOC122345250 cyb561a3a,LOC107673362,LOC107721551,LOC107595000,LOC107659288 coding upstream 8144 9566515 ~ 9569294 (-)
hdr LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999 coding upstream 12831 9571202 ~ 9575807 (-)
unc5db unc5db,unc5d,LOC107673416,LOC107709861,LOC107659286 coding upstream 21117 9579488 ~ 9681801 (-)
G34704 NA non-coding downstream 287492 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 474719 9013306 ~ 9060814 (-)
G34607 NA non-coding downstream 544220 8991101 ~ 8991313 (-)
G34606 NA non-coding downstream 544510 8988611 ~ 8991023 (-)
G34583 NA non-coding downstream 601394 8933911 ~ 8934139 (-)
G34869 NA non-coding upstream 205702 9764073 ~ 9764532 (-)
G34871 NA non-coding upstream 207897 9766268 ~ 9766607 (-)
G34877 NA non-coding upstream 219262 9777633 ~ 9778238 (-)
G35035 NA non-coding upstream 723038 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 779376 10337747 ~ 10341167 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 132910 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 315005 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 605480 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 857815 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1103947 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 766588 10324959 ~ 10335343 (-)
G35122 NA other upstream 902837 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1309993 10868364 ~ 10874064 (-)
G35384 NA other upstream 1365556 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 1401940 10960311 ~ 10969118 (-)

Expression


loxl2b(loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 5.
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loxl2b(loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858) Expression in each Bioproject

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loxl2b(loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network