Item | Value |
---|---|
gene id | loxl2b |
gene name | loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056703.1 |
NCBI id | CM032072.1 |
chromosome length | 32833783 |
location | 9535533 ~ 9558371 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
loxl2b | Predicted to enable calcium ion binding activity; copper ion binding activity; and protein-lysine 6-oxidase activity. Predicted to be involved in several processes, including collagen fibril organization; peptidyl-lysine oxidation; and positive regulation of cell differentiation. Predicted to act upstream of or within chromatin organization. Predicted to be located in several cellular components, including basement membrane; chromatin; and endoplasmic reticulum. Predicted to be active in extracellular space. Is expressed in diencephalon; head mesenchyme; hindbrain; notochord; and pectoral fin. Orthologous to human LOXL2 (lysyl oxidase like 2). |
description |
---|
unnamed protein product |
id | name | namespace |
---|---|---|
GO:0032332 | positive regulation of chondrocyte differentiation | biological_process |
GO:0002040 | sprouting angiogenesis | biological_process |
GO:0030199 | collagen fibril organization | biological_process |
GO:0001837 | epithelial to mesenchymal transition | biological_process |
GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
GO:0055114 | oxidation-reduction process | biological_process |
GO:0001935 | endothelial cell proliferation | biological_process |
GO:0001666 | response to hypoxia | biological_process |
GO:0043542 | endothelial cell migration | biological_process |
GO:0005604 | basement membrane | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005694 | chromosome | cellular_component |
GO:0016020 | membrane | cellular_component |
GO:0005507 | copper ion binding | molecular_function |
GO:0004720 | protein-lysine 6-oxidase activity | molecular_function |
GO:0005044 | scavenger receptor activity | molecular_function |
id | description |
---|---|
K00280 | LOXL2_3_4; lysyl oxidase-like protein 2/3/4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043239197.1 | True | 3680 | mRNA | 0.46 | 14 | 9535533 | 9558371 |
XM_043239198.1 | False | 3677 | mRNA | 0.46 | 14 | 9535533 | 9558371 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
sfrp1a | LOC107587465,LOC107721541,LOC107659285,LOC107709857,LOC107673425,LOC107594997 | coding | downstream | 17020 | 9508637 ~ 9518513 (-) |
zmat4a | zmat4a,zmat4,LOC107594996,LOC107587306 | coding | downstream | 40883 | 9430925 ~ 9494650 (-) |
adam28 | LOC107673423,LOC107709852,LOC107594994,LOC107656497,LOC107721555 | coding | downstream | 153656 | 9372014 ~ 9381877 (-) |
ogfod2 | ogfod2,LOC107673403 | coding | downstream | 215928 | 9316654 ~ 9319605 (-) |
tacr1a | tacr1a,tacr1,LOC107673353,LOC107594990,LOC107709848,LOC107656492,LOC107721554,LOC107587419 | coding | downstream | 259981 | 9248321 ~ 9275552 (-) |
LOC122345251 | histh1l | coding | upstream | 3554 | 9561925 ~ 9563296 (-) |
zgc:153409 | LOC105896809,LOC106958509,LOC103460788,LOC103154043,LOC107671222 | coding | upstream | 7108 | 9565479 ~ 9565932 (-) |
LOC122345250 | cyb561a3a,LOC107673362,LOC107721551,LOC107595000,LOC107659288 | coding | upstream | 8144 | 9566515 ~ 9569294 (-) |
hdr | LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999 | coding | upstream | 12831 | 9571202 ~ 9575807 (-) |
unc5db | unc5db,unc5d,LOC107673416,LOC107709861,LOC107659286 | coding | upstream | 21117 | 9579488 ~ 9681801 (-) |
G34704 | NA | non-coding | downstream | 287492 | 9246920 ~ 9248041 (-) |
G34594 | NA | non-coding | downstream | 474719 | 9013306 ~ 9060814 (-) |
G34607 | NA | non-coding | downstream | 544220 | 8991101 ~ 8991313 (-) |
G34606 | NA | non-coding | downstream | 544510 | 8988611 ~ 8991023 (-) |
G34583 | NA | non-coding | downstream | 601394 | 8933911 ~ 8934139 (-) |
G34869 | NA | non-coding | upstream | 205702 | 9764073 ~ 9764532 (-) |
G34871 | NA | non-coding | upstream | 207897 | 9766268 ~ 9766607 (-) |
G34877 | NA | non-coding | upstream | 219262 | 9777633 ~ 9778238 (-) |
G35035 | NA | non-coding | upstream | 723038 | 10281409 ~ 10296141 (-) |
G35047 | NA | non-coding | upstream | 779376 | 10337747 ~ 10341167 (-) |
G34789 | vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 | other | downstream | 132910 | 9337828 ~ 9402623 (-) |
vamp5 | LOC107594989,LOC107681225 | other | downstream | 315005 | 9215498 ~ 9220528 (-) |
G34580 | LOC107681240,LOC107709820,LOC107560234,LOC107715750 | other | downstream | 605480 | 8929470 ~ 8930053 (-) |
LOC122345093 | NA | other | downstream | 857815 | 8674229 ~ 8677718 (-) |
timm8b | timm8b,LOC107717885,LOC107598437 | other | downstream | 1103947 | 8429700 ~ 8431586 (-) |
si:dkey-96l17.6 | si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 | other | upstream | 766588 | 10324959 ~ 10335343 (-) |
G35122 | NA | other | upstream | 902837 | 10461208 ~ 10461709 (-) |
G35371 | znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 | other | upstream | 1309993 | 10868364 ~ 10874064 (-) |
G35384 | NA | other | upstream | 1365556 | 10923927 ~ 10926163 (-) |
slc25a15b | slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 | other | upstream | 1401940 | 10960311 ~ 10969118 (-) |