LOC122345274


Basic Information

Item Value
gene id LOC122345274
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12169594 ~ 12173002 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239264.1
AAACTATGAGTCAGTCACCAATACACCAAGATGGAAATGTTCCATCAGTGCTACAAGAGAATAAAAAGAGAAGCGTGGCAACCAACAAATTATCACTTCACATTACACAGCCCAGTGATTCAGATAATGGGAGTTATAGCGCGAGTGATACAAACAATGATCATTTTCAGCTTGTTATTCCTCAAACAGCTCAAGAAGCACAGATTTCTATGGGGTCTGAAATCACTGTTCCCTGTCACTTGTCTCCTGAAGTCTGTGCCAGTGCCATGCAGATCAAATGGTTTAAGGAGACAGACTGCGTTTGCATCTACAAGAACGGACACGTGATTGAGGGGAGGAGCTACAAAGACAGAGCGAGACTTGACACTCCTGTACTGGAGAGAGGAAACGTGTCCTTACATCTAAATAAGTTCAGTGTGTCAGATGTTGGAGATTACTATTGTCAGGTCATCACTAGAGACACGACAAAACAGATCACAGTAGGAGtgAGGATAAAACCTGCGAGTCAGTCTCCAACATTTCAAGACCAATCTGTTCAGCTAATGCTGTTTGAGACCGACAAAGTATGGACTGAAGAGGAAACAGACAACATGGATAAATCTGCTCTAAGGGCTGagatGAAAGTGAACAATGAGCAGGATACATTGCTTaatgtttacatacaaaaaagCTGGAAAAAGCCGAAGAGGAGTTGAGAGCATTGAGAATGAAGTTGGACAGACTCGAATCTCACGCTCAGATGTTGGAGAGAGACAAAAATACCCTTTAATAGCTAAGAGTTATGTAGTAAGCATTGAAATTTCAGGTATCATTTGCAACTGATTAGGAATATTGTTCCTCGCAACCAGCAATCCAGCAAGACACTCAATCGTCACACAACGTaacaaaattcatatttatgagTGAAGTCTTTACCCCACAAATGACAAACGcaaaaatgtcataaattgAGTGCCAAATGGGGCAGAAGCTGTGTTGTGTTGAATTCATCTCGGTGTCGAACAGACTCCTCACAGTTTTCAGTACAGTTGGAGCGGTTAAAGCAAGGGTTGGGCAGCCTGAGGCAAAGAAAGCTTAACAATGAAGGAGTAAGAGACAGCTGACCCAGAACAATGCTGTTTcttgtgaatttttttatttataatagaaCAGCCAATGTACTGCATCCTCCAGGGCCCAGGTCTACTGTATGTTCatgtttgaatttaaattagCCACAGTATGTAGTTCAAGGTTGCTAAATGAGttgcatattttgtattatacgATTTAAACTATACCAGAGAGGAATGTTACCATTCATTCTATAGCTGTGCAATGAATGTCAATTCTACTTAACAATAATGTAGCGTGTCAATGtttgtattaattataaaatgagtCTGCGCGACTCGATTGCATCAATATAACGTGAATGCAGCGCCCCGCGTGAACACAGTAATCACTCGCAGCATCTCACGCTCGT

Function

GO:

id name namespace
GO:0044425 obsolete membrane part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239264.1 True 1465 mRNA 0.41 8 12169594 12173002

Neighbor

gene id symbol gene type direction distance location
gab3 LOC107746243,LOC107597263,LOC107672781,LOC107663235,LOC107741201 coding downstream 246585 11902322 ~ 11923009 (-)
shisa2a shisa2,LOC107746248,LOC107672960,LOC107597350,LOC107741289,LOC107557100 coding downstream 320639 11847127 ~ 11848955 (-)
zc3h12b LOC107741193,LOC107746237,LOC107672716,LOC107597257,LOC107663225 coding downstream 329552 11825267 ~ 11840042 (-)
fdx1b LOC107672951,LOC107746235,LOC107597349,LOC107741288,LOC107663211 coding downstream 383451 11777612 ~ 11786143 (-)
arhgap20b LOC107672940,LOC107597255,LOC107663218,LOC107746244,LOC107573640 coding downstream 401580 11731519 ~ 11768014 (-)
LOC122344646 NA coding upstream 35 12173037 ~ 12177215 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding upstream 17700 12190702 ~ 12196377 (-)
LOC122344659 NA coding upstream 99215 12272217 ~ 12273638 (-)
LOC122345273 NA coding upstream 183834 12356836 ~ 12363715 (-)
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding upstream 208362 12381364 ~ 12394042 (-)
G35690 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 non-coding downstream 298541 11866762 ~ 11871053 (-)
G35660 NA non-coding downstream 393481 11775805 ~ 11776113 (-)
LOC122344709 NA non-coding downstream 394982 11769860 ~ 11774612 (-)
G35601 NA non-coding downstream 465886 11701233 ~ 11703708 (-)
G35599 NA non-coding downstream 469928 11697948 ~ 11699666 (-)
LOC122345280 NA non-coding upstream 6049 12179051 ~ 12179750 (-)
G35797 NA non-coding upstream 8485 12181487 ~ 12182979 (-)
G35805 NA non-coding upstream 53916 12226918 ~ 12248708 (-)
G35804 NA non-coding upstream 55580 12228582 ~ 12247509 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding upstream 82478 12255480 ~ 12256812 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 184 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 353650 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 516967 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 702472 11419955 ~ 11467122 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 1200476 10960311 ~ 10969118 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 144801 12317803 ~ 12319685 (-)
G35936 NA other upstream 328912 12501914 ~ 12505958 (-)
G36047 NA other upstream 880842 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1406059 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1481292 13654294 ~ 13699226 (-)

Expression


Co-expression Network