LOC122345277 (sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102)


Basic Information

Item Value
gene id LOC122345277
gene name sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12296255 ~ 12300181 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239266.1
ATGGAGGATCTGGCAGAGTATCACGGGAGCATTAGTAAGAGGCGAGCGGAAAAGATCCTGAGTGAAGCAGGCAGAGACGGCAGCTATCTGATCAGAGACAGCGCGAGCGCCGCGGGGTCTTactgcgtgtgtgtgctGTGTGATGGATGGGTTTACACCTACCGAGTTTTCAAACAGAAGGATGGCCTCTGGACAATAGAGgtgGCTCCTGGGATGAAGGAAAGACTCTTTAGGAAAGTTGCCAACCTTATTGCTGCCTTTAAGATCCCAGACCAAGGCATCTCTGTTCCTCTTTTGTATCCTGTAAACAGAgctaaataataacatacaaGCCACAACATACCTCAGAACAGTTTCTACATGCACGAGAGTGACTTCTCTGGGGTCTCTTAAACCTGTGGTGACTGTtgtaaatgctgtaaataatctgtgagatataaaaactataaatgctCTGCTAAAGCATGCTAAATAATTGGCAAGCCCTGTTACATAATACATTGTATACTTTAATTTTGATGTTAGTTTTtctctgccatttttttttttttgttcaagaaTAATTATCTCATGTTAGCATCAGCAACACAGATACACCCATGAGAGAAGAAGGCCTTGAACAAAATGTCAGACCTGAGTTCTGAGTTAGATTGCTATCTTGTTTTCCGTCTAGTAATGAGAGTTTGCTTAGcaagtgtttctgtgttttagaaAATTCTATTTCTGTACACTAAACAGGAAATAACAGTTTTCTCATTAAACTTCACTGAGCTACGAACTTCCTGCAATAATACCATCACAATAATGTTATAAACAAATTGGTCTTCCGTGTAAGGAAATTCAGAGCCTTTTGAAGTTACCAAATAAAACCcaaccaaaaat

Function

symbol description
sh2d1aa Human ortholog(s) of this gene implicated in X-linked lymphoproliferative syndrome 1. Orthologous to human SH2D1A (SH2 domain containing 1A).

NR:

description
PREDICTED: SH2 domain-containing protein 1A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239266.1 True 882 mRNA 0.40 3 12296255 12300181

Neighbor

gene id symbol gene type direction distance location
LOC122345271 LOC107672980,LOC107743347,LOC107597351,LOC107741294,LOC107663230,LOC107557104 coding upstream 24991 12265270 ~ 12271264 (+)
LOC122344656 cds2,LOC107654641,LOC107597267,LOC107741205,LOC107663217,LOC107557099 coding upstream 50827 12237734 ~ 12245428 (+)
tenm1 tenm1,LOC107713050,LOC107557119,LOC107597323,LOC107741271 coding upstream 131319 12037448 ~ 12164936 (+)
arhgef9a arhgef9a,arhgef9,LOC107741200,LOC107557118,LOC107597261 coding upstream 394984 11876965 ~ 11901271 (+)
amer1 LOC107597260,LOC107746241,LOC107672756,LOC107741198,LOC107663227,LOC107557115 coding upstream 425217 11865198 ~ 11871038 (+)
si:dkey-13n15.2 si:dkey-13n15.2,LOC107743336,LOC107595973,LOC107654639,LOC107575942 coding downstream 134155 12434336 ~ 12457053 (+)
camk2b1 camk2b1,camk2b,LOC107696072,LOC107741206,LOC108255499,LOC108444312,LOC102293296,LOC100695100,LOC103134902,LOC107386224,LOC107103247,LOC108242787 coding downstream 157730 12457911 ~ 12510008 (+)
pik3ip1 pik3ip1,LOC107576614,LOC107654636,LOC107741209,LOC107696071,LOC107595949,LOC107743346 coding downstream 232198 12532379 ~ 12539820 (+)
si:ch211-225b11.1 si:ch211-225b11.1,LOC107743342,LOC107597273,LOC107654634,LOC107595947,LOC107696069,LOC107741213 coding downstream 264011 12564192 ~ 12579711 (+)
wscd2 wscd2,LOC107597274,LOC107743343,LOC107741214,LOC107696066 coding downstream 295096 12595277 ~ 12639274 (+)
LOC122345282 LOC107597264,LOC107672815 non-coding upstream 8877 12278130 ~ 12287378 (+)
LOC122345281 NA non-coding upstream 11133 12284445 ~ 12285122 (+)
G35733 LOC107557098,LOC107663216,LOC107597264,LOC107672815 non-coding upstream 114231 12173283 ~ 12182024 (+)
LOC122345698 NA non-coding upstream 309435 11943437 ~ 11986820 (+)
G35629 NA non-coding upstream 520763 11773986 ~ 11775492 (+)
G35756 LOC107557121,LOC107597264,LOC107672815,LOC107663216,LOC107557098 non-coding downstream 56257 12356438 ~ 12358798 (+)
G35834 NA non-coding downstream 236557 12536738 ~ 12544088 (+)
G35855 NA non-coding downstream 248485 12548666 ~ 12551180 (+)
G35843 NA non-coding downstream 267003 12567184 ~ 12672206 (+)
G35864 NA non-coding downstream 340086 12640267 ~ 12641645 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 40583 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 353145 11924228 ~ 11943110 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other upstream 643572 11638516 ~ 11652683 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other upstream 992824 11266642 ~ 11303431 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 1146030 11136223 ~ 11150225 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 213832 12514013 ~ 12528790 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other downstream 403171 12703352 ~ 12705245 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other downstream 503608 12803789 ~ 12807351 (+)
ins ins,LOC107596207 other downstream 1683916 13984097 ~ 13985706 (+)
G36495 NA other downstream 1990239 14290420 ~ 14292500 (+)

Expression


Co-expression Network