gfm2 (gfm2)


Basic Information

Item Value
gene id gfm2
gene name gfm2
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6255418 ~ 6263302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239279.1
CCAAAACGTGTGCGTTCGTAAACTGGTCCCGACTGTAACGACTCTTAAAAAACGTTTGACAGCTGCCCGTTTGCTGTGTTTAACATTAGTGGGGAAAGATATCACTGAGTTTGTTTTAGATGTCTTTTGCTTTATCGTGTCGTTACTGAGAATTAACCGTCCGTCCACGCGTTACGATGAATTTAATGTCAAGTCTGATCTCAACGTGACTTTGAGCGAGCACAGCAGTCATGTCTTGCCGTACAACTGAAGCTCCAAGCCTTTAACCAaagtcaaaatgcatttaattgtgcCGTTCCCAGTTTTTCGAGGGAGCATCAGACACCTCATGACCAGATCCTCACAGACGTGCATATGCAAAGTGAACTGGAGGagaaattatagtttttatcgAGATGAGGTGAAATCACTTCGAGCGGTGCTCAACCCTGACATCTCAAAAATTCGGAACATAGGTATCATGGCACATATAGATGCAGGGAAGACCACCACAACAGAGAGAATGCTGTATTTCTCTGGCTACACACGGGCTCTCGGAGATGTGGATGACGGCGACactgtaactgattacatggctcaagagagggagagaggaatCACCATCCAGTCAGCTGCTGTGACCTTTGACTGGAACCATCACAGGATTAACCTCATAGACACACCGGGCCATGTTGATTTTACTCTGGAGGTTGAGAGAGCTTTACGGGTGTTGGATGGAGCGGTCGCTGTGTTTGATGCTTCTGCTGGAGTAGAGGCTCAAACCATGACTGTGTGGCGGCAGgcagaaaaacatcaaatcccgtgtgtgtgtttcctaaACAAGATGGACAAGCCTGCAGCTAGCCTGAGGTACTCTTTAGACAGCATAAAGACTAAACTGAAGGCCAACCCCATTCTCCTTCAGATCCCCATTGGCTCAGGAAAGAGCTTTACCGGATTGGTGGACTTGATCGCTAGGCAGAAAATGACATGGCAGGGGAGCTCACTGACATATGACGGTGATGCTTTTGAAACCAGCGCCCTTCATCCCTCAGATGACCCAGATATGCTCCGGGCCGTCAGTGAGGCCAGGGCTACTTTGATAGAACAgGTAGCAGATCTAGATGATGATTTTGCGGAACTGGTGCTGGGACAGTACAGTGAAAACTTTGATGCAGTGCCTGCTGGGAAGTTGCAGGAGGCGCTGAGAAGAGTAACATTAGCTCGTAAGGGGGTGCCTGTGTTGTGTGGAAGCTCTCTGAAAAATAAAGGTGTTCAGCCTCTACTGGATGCCATTACTGCTTACCTTCCTGCCCCCAACGAGAGGAACCATGACCTGGTACGCTGGTATAAGGACGATCTGTGTGCGTTGGCATTCAAAGTGGTCCATGACAAACAGAGGGGTCCACTCGTGTTTGTTAGGATCTATTCAGGAAGCATGAAGGCTCAGTCAGCAGTTTACAACATCAGCAGGAACGGAACGGAAAGAATGAGCCGACTTCTCTTGCCTTTTGCCGATCAGCACGTAGAAATCCCTTCTTTATCTGCTGGAAACATCGCGCTCACGGTTGGACTCAAACAGaCGGTGACAGGCGACACCATCGTCTCCTCCAAAGCCTCTGCTGCAGCTGCGGTGCGGCGTGCTCAGAACGAAGCGGAGAGCAAGAGTAGCTCGCAAAAGGAGAGCAGCAGTCTGGCTCTTGCAGGGGTGGAGGTCCCCGAGCCCGTGTTCTTCTGCTCCATTGAACCTCCTTCTATGGCCAAACAAGCGGACCTGGAGCACGCGCTCAACTGCCTGCAGAGAGAAGACCCCAGCCTGAAAGTCAGAACAGACTCTGATTCTGGACAGATGATACTTTGTGGCATGGGAGAGCTGCACATTGAGATCATCCATGACCGTATTAAGAGAGAGTACAACATCGAAACTCACCTAGGACCCTTGCAGGTGGCCTACAGAGAAACCATCCTCCAATCAGCAGCTGCCACCGACACATTAGATCGCACTCTTGGAGACAAGAGGCATGTTGTTACAGTAGACCTTGCTGTCCATCCTCTGAAGAATGAGTCTAGCACTTCCTGTGATGTTACTTTTGAGGAGGACGTAAAAACTCAGCTTCCACCTGATGTCAAAGAAGCTGTGGAAAATGGAGTTCAGAGCGCCTACCTCCAAGGTCCTGTGCTTGGTTTTCCTGTAGAGGGAGTAAAGACGGTTATCCAGCACGTACGTTTGGAGCCTGGCACTTCTGCAGCCATGGTGGCAGCTTGCGTGTCCCGCTGCATGCTCAAGGCTCTGAAGCTGGCTGGGGTGCAGGTTTTGGAGCCGGTGATGGCTCTGGAAGTGACCGTAGGTGAAGAGTTTCTGAGTTCTGTGCTTGCAGATCTCTCCCAGCGACGCGGTACTATATGTGACATCCAAAGTCGACAGGAAAGCAAGGTTTTGCTGGCTACAGTACCTTTGGCTGAGATGATGGGCTACTCGACTGCACTGCGCACTTTGACCTCTGGGAATGCTACTTTTTCTCTGGAGCTGTCCAGCTATGAGCCCATGAACACTCAGGACCAGAATACACTGTTTAACAAGATGGCTGGACTGGCATAAAACGGGAACCTTCACCAACTCAACTGAACATTTATACAGGCCAGTTTTGATTTGTTCTATTATTGGATGCTCATATGGTCTAGAAGATGAATCTTTTGAAAACTAACCTACATATGGACATATTTTCTCAGCCCACATCCAGAGAtataattggattttttttctctgatggagagaaaaaaagcgcttgctgcttaatattaaaCTACATTACCAATTTTACAAGAA

Function

symbol description
gfm2 Predicted to enable GTPase activity. Predicted to be involved in mitochondrial translation and ribosome disassembly. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 39. Orthologous to human GFM2 (GTP dependent ribosome recycling factor mitochondrial 2).

NR:

description
ribosome-releasing factor 2, mitochondrial

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0032790 ribosome disassembly biological_process
GO:0032543 mitochondrial translation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K02355 fusA, GFM, EFG; elongation factor G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239279.1 True 2806 mRNA 0.49 20 6255418 6263302

Neighbor

gene id symbol gene type direction distance location
enc1 enc1,LOC107655934,LOC107757521,LOC107570861,LOC107700930,LOC107596864 coding downstream 11600 6232266 ~ 6243818 (-)
ankra2 ankra2,LOC107757524,LOC107655931,LOC107596806,LOC107718646,LOC107700928,LOC107596181 coding downstream 155717 6096157 ~ 6099701 (-)
foxd1 foxd1,LOC107598200,LOC107718663,LOC107700903,LOC107596217,LOC107757501 coding downstream 165862 6086801 ~ 6089556 (-)
trnak-uuu_104 NA coding downstream 299047 5956299 ~ 5956371 (-)
slc6a4b slc6a4b,LOC107654599,LOC107597334,LOC107595929,LOC107672619,LOC107741230,LOC108434249,LOC106580268 coding downstream 345427 5898895 ~ 5909991 (-)
aif1l aif1l,LOC107718642,LOC107570864,LOC107757519,LOC107596876 coding upstream 2435 6265737 ~ 6281395 (-)
lamc3 lamc3,LOC107596886,LOC107718641,LOC107700933,LOC107757520,LOC107570860 coding upstream 19472 6282774 ~ 6343615 (-)
ttll11 ttll11,LOC107700937,LOC107596909,LOC100002237,LOC107693816 coding upstream 499834 6763136 ~ 6792026 (-)
LOC122344933 NA coding upstream 564813 6828115 ~ 6830827 (-)
LOC122345679 NA coding upstream 572581 6835883 ~ 6839683 (-)
G33615 NA non-coding downstream 76747 6178172 ~ 6178671 (-)
G33612 NA non-coding downstream 81305 6173847 ~ 6174113 (-)
G33610 NA non-coding downstream 83006 6172144 ~ 6172412 (-)
G33549 NA non-coding downstream 272615 5969242 ~ 5982803 (-)
G33544 NA non-coding downstream 296205 5953276 ~ 5959213 (-)
G33681 NA non-coding upstream 346147 6609449 ~ 6611492 (-)
G33683 LOC107588773 non-coding upstream 348438 6611740 ~ 6613055 (-)
G33738 NA non-coding upstream 495607 6758909 ~ 6847805 (-)
G33768 NA non-coding upstream 572657 6835959 ~ 6858383 (-)
G33791 rpl7a,LOC100194725 non-coding upstream 686242 6949544 ~ 6952310 (-)
G33175 NA other downstream 1632360 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2062337 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 2356840 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 2502654 3744675 ~ 3752764 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 3295241 2951462 ~ 2960177 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 560869 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 659544 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 1119044 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 1443668 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 1455263 7718565 ~ 7721758 (-)

Expression


Co-expression Network