ntrk2b (ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341)


Basic Information

Item Value
gene id ntrk2b
gene name ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24166208 ~ 24187485 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239342.1
ataaaataagactttGTTTATGTTACCGTTTGCAGTGCCAGATTTACACTCGATAGTGTTGCAGCGACTTTCGTGTCTGGCTCGGTTAACAGAGTATTGCTGAAAAAAGTACAAACCCCATTCAAACCGATCTGACTAACGCTATCTATTTATCTGAGATTAAATGGCTAGTTTATTAACGGTAACGTTTATTAATGggaatttataatattttgggTAGAATGACAATCTCGTTGACCGCGGTGAAATGTGTTGCCTTTGTCGCCCCCTCCTGGGAAAAATATAGAGGTTCGTCACATTTCACTTCATCCTCTGGCGTGCGCTCTAGTGATTTCCTAAACCAAGGCCCTTCAGTGCACTCTTgctagaaaaacaaaatcaaaatgtttatataaatcgTGAAATGTAGCGCAGCCGAGCTCCAACTTTTCTCTCAAGATGAACACGGACGCAGAAACGCGAGCACTGCTGTCAAACGTGAGATTCAAAGGCGCGTGTTCCTGAATCCATCGCAGTTTCTCTTCAAACAGACCGATAATTCGGTAAACACTCTAAAGTGACAGATCATCACTAACATCACTTCGTCTCGTTTCACATACGCTGCGCCGCGATTGGAATGCGAGACTTGGCACAGCCGCTAAAAACATCCAGGCATTTTTGTTTGGCAATTATTTTGCTAGATGCAGCCCATCTCGTGCGTCAAACGGCACGTCACACTCCGGTAATGGCTATTCATGAAGTTGTGGTATTGTTGAGAAGAGCGCGATGGAAAAAAGCGACGCGGCGGGCTCCGAGTGAACGGTTAAACGGATGAAAAGCGAACGAAAACGATCAAGTCGTTTCCCAAACGATTCGACGTAAAAACATATGCGCATCCCCATCCCTGTCAACATCTCCCAAAGATCGTCCCATTGACAACACAGGTGATCGATTATTGCCGATGTGGCACCGCCGAGAGCGTCTTTAACGTCCACCCTCCACATGTAATTACCGCGGCGACGGCTGAGGGAGATGCGGCGGGTAATCAATAGGCGCTTGCAGCAGGTACGCGCCGCTGCCTCTTCACTCGCGCGCAGACgcacgcgcgcacgcacaccGTCTCGCTTGTTTTCTTGCCCAGCGCTGGATGTGAGACGTCAGCGTCACCGCCGCAGCCCGTAGACACACGCAGCCCGCGGCCACGCGTTTCTCCACCGCGTCTGGAAGAAACGAAGCGCGGATAGCGCAACGCATCGGCACGCCGACATTTCCCCGCCGCGTTACCACCTTTCTACGGAGACCAGATAAGGCCACTCCATGACAGTCTCGCGTCGCGCACAACGTCTTTGCGCATCCCACAGCAGCGGCGTCTCATCTCGGAACTGCTGAAAATACTACAAGACATTACACAACGCTGAACGCACCGCGCCAGACCTGCCATGACCGCAGGGCTTCGTGGAATGGCTCGCTTGGGGCTGTGTGGGCTTTTATTCGGGCTGCTGAGGCTCAGCTCGGCTTGTCCTGGGTCGTGCTTTTGCAATGCCTCGAGGATCTCGTGTATCGATCAAGAACCGGGGATCGAGGATTTCCCCGTCTTGGTGCCGGAGTCTGACATGGAAAACATCACGGATATATACATCTCAAATCAAAAAAGGCTACTTACAATCAACGAGGACCATATGAAGTTCTACTCAAATCTCAGGAATTTAACAGTGACGAATACTCACCTGACGCATGTATCTACGATGGCCTTCTTCAACAATTCCAAACTTCAATATCTGAATCTCAGAGACAATAACTTATCAACGCTGTCCTGGAGGGCACTTCGTAATTCAAACCTGTCGACtttGTTGCTCTCTGGGAACCCTTTGCAATGTGAATGTAAGAACATCTGGATCAAAGTCTGGTTGGatgacagtgagagagaggggCTGCAGTGTCTACAGGAAGGAGGACGAGCGAAAGCCCTCTCTAGACTTACTCTTCCTTCATGTGAGTACCCACGTGTGGAGGTCATCCCCGCTGTTGTCAGTCAAATGGCAGGAACGGATGCCACAGTGATGTGTAGTGTGTCAGGAGCCCCGACCCCTGAGCTCTCCTGGAGCTTAAACTCCAGCGATCACCCTCCTCTCTCAACCAGCCACGAGatTTCTCACAAAATGGATCTGCAGTCTGTTCTGACTCTAAGTGGACTTTCACCTGATGACAACGGCAGAGAGCTCACCTGTAGCGCCGAGAACATCGTGGGCCAGACTGAGGCTTCAGTCCTTCTCAATATTCTTTTTCCCCCTACTATCGTGCAGCTGTACCAGCCTGTGAGGAACCAGGACTGGTGCATCCCTTTCACTGTGACGGGCAACCCGAGGCCTGATCTGCAATGGTACCATGAGGGGAAGCTCCTGGAGGAGCAGCAGTACATCAGGACCGAAATCCACGAAATCACGGATACGGAGTACCACGGCTGTCTGCAGCTGGTCATTCCCACTCATATCCATAACGGCATTTACACGCTGGTGGCTAGCAATGAGTTCGGGGAGGACAGGGGAAACGTGTCGGCGCACTTCATGCACATACCCGATGTGGACCACTCGGGGACAGAGGGAGTGTTTTATTATGACACAACATTTAGTCCAGaaacccCACCACTGGAGGACAAAGTCGCGGTTTATATAGTGGTTGGAATAGCTGGGGTTGCTTTAACTGGATGTATCCTGATGTTAGTTTTCCTCAAGTATGGTAGAAGCTCCAAGTTTGGAATGAAAGGCTCTTCATCTGTCATTAGTAATGATGACGACTCGGCCAGCCCGCTTCACCACGTTTCCAATGGCAACAACACACCATCATCGTCGGAGATGGGCCAAGATGCCGTTGTCATCGGAATGACAAAGATTCCAGTCATTGAGAACCCCCAGTACTTCCGCAACCCCGGCAGCATGCTGAAATCGGACACTCTCGTCCAACACATCAAGCGTCACAACATTCTGCTGAAGAGGGAGCTTGGAGAAGGGGCTTTTGGGAAAGTGTTCTTAGCTGAATGCTACAGCTTGTCTCCTGACCAAGAGAAGATTTTGGTGGCTGTTAAGACTCTGAAGGAAGCCAGTGAAAGCGGACGAGCAGATTTCCACCGAGAGGCAGAGCTCCTGACCAACCTGCAGCATGAGCACATTGTCAAGTTTTATGGCGTGTGTGTAGAAAGCGACCCTCTCATCATGGTGTTCGAGTACATGAAACACGGAGACCTCAACAAGTTTCTCAGGGCTCATGGACCAGACGCAGTGCTGATGGCAGACGGACAGCAGAGTTTGCTGGTGGAGTTAACTCAGCCTCAGATGCTGCACATTGCCCAGCAGATAGCAGCAGGCATGGTGTACCTGGCCTCACAGCATTTCGTGCACAGAGACCTGGCCACACGCAACTGCCTGGTGGGAGAGAACCTGCTTGTCAAGATAGGAGACTTCGGCATGTCCAGAGATGTGTACAGCACCGACTACTACAGGGTGGGTGGTCACACCATGCTGCCCATCCGCTGGATGCCCCCAGAGAGCATCATGTACAGGAGATTCACCACAGAAAGTGACGTGTGGAGTTTGGGTGTGGTCCTCTGGGAAATATTCACATACGGCAAGCAACCTTGGTACCAGCTTTCAAACAACGAGGTGATCGAGTGTATCACACAGGGTCGGGTGTTGCAGAGACCTCGTACTTGCCCCAAAGAGGTGTATGACCTGATGCTGGGCTGCTGGCAGAGGGAGCCCTACATGAGACTCAACATCAAAGAAATCCACAACCTGCTCCAGAGCCTGGCCAAGGCCTCGCCTGTTTACTTGGACATCCTGGGCTGATCTGTTTGCCAGTATGGGTGTGTAATTGTTAgtaagaaaatgtgtgtgtgtgaacgtgtgGTATAAAAGGAGAAAGGGATGATCATTTAGGACGAGTGATTGAatataggtgtgtgtgcgtatgtgtgtgtgtgtgtgttcataaaaATGGCTTGTGCTTCAGCACTCCCACCACATAGACTAAAAGGCCTTAAAGTTGACTGTGTGCATTGCTTTGATTTTTCTTAAATCTGGACATGTCCATCTATCGCGCATCATTATGTTTTCTAAAAAGCCCAGATAGTCTACAAACAGAAACATCTGATTGTTGTAAATATGCGTCAGAGACAATGCAGACCTTTTGTTTAACAACCTtttcgaaaaaaaaataatttggtttggcaattttggtttgtttgttttctcttaccATTTTGTTTATCGAGATGGACAGAATTAGGACCTGATGAGGACCCAGTCATTAGCACAACGCTGTCAACGCCCTGGCGTCATTCTGGCAGACTTTACGCAGATCGCAATACTATTCCTACCGCAAACTATCGAGTAACAATCACGGAACTGCCAGATTCATGTTTcgtttgaagttttttttttacacgtttgATCTAATTTGAGATTTTTCTGTGCCAAGTTTTGATGTCTATAATGCTGAGGTCGATGAAAGGCGTTTTTTGGGACATCTCGGTGCGCCCCATCTTACTCAGCGCAAACTTCGTAATAGAAGCACAGCGACAAAGACGCCTCCaggtttttgttcttttttttctttggaagaGGCTTGAGGTTGGACACAGAGTGTTTGGAGTGAGCACAGAGGCAAAGTCACCAGCAGTGGCACTTAAGTATTTCCTCAGACTTTGTTTGGCTCCCCGGCCATAATTCTGATTCGGAGGGCACTTCCTAACTGAGGTTTGAAGAACAATGAGAAGATGCTGTTCTTGTGTCAGTGGTCTCATTTTTTTAACGTTATAGGGTGCTTACACACTAGAAAACGTTTTGACGGAACGCTCGATGGATAGACATCGGCCTGATGTATTTCTGAATGTGTGGAAAGAGCCATTCATTCCGGATATTTCCCTGCCTTTGGCCCTAGAGGCTGGGATAGGTTCCAGCATCCCTACGACCCTACATCAGACAAACAGTTCTGgattatggatggatggaaagagcCAGACTGtttgaaataaagcagaaatacaGCCAATTGGATTTCTGAAAGCACAATTGGATCCGCCTCCCTGGGATTTTCAGTAGTCAACAGATCCCTGCGACTGCGTTAGAGCCAAAGTACAAATCCCTCCACTTTTGGTCACATAACGGAGCATCAGAATCAACAAATTCCCAGCATTCTCCGACGTAGTGTGAACTAGTGTGTAGGCACTCTTAACCGTCCTCATGTCGTGATTTGATGGACTTTGCCTTTGCGAAGACTGAAGATTTCTTTCAGACCCGTTCCTGAGGAGTATATCCATAGATGTTGTTTATAACACAACAGACCTGCCTGATCAGCTGGTTATTCATTATTATCTGTTTATGTATCAACTGCGAAATAACTGCtaaataatatgtgtatgtgatAATCTATGATCGATTTGTTTTTGATGTATTGTGGGCCGTTTCAAAGCGATGGGCTTGATGGGCACTGTGAAGTGAATGTTCATGTGAGAATGAAACGAGTCGGACTGTCCCTGAGGTCACGAATGGAAGACCCTATGAAGGGACTGTCCAGATTcaacctgtgtgtgtttcaacACCACCAGAGGAGGACAACTGGCAACCAACAGGGTTAAACTACAAAAGACTAAATGACAACCAAAACTGTcattacactatatatatatatatatacagtgcattCAGACAGTATTCAGATCCTTTcgtttttgtcacattttatgTTGTAACCTTAggttgaaatgtattttttttcgaATCGGTATCAGGCTACGCTATGATGacgaagcaaaaaaaaaaaacctgtgaaaATTGATAAATTGTTAATAGCAAAAACACTAATATCTCAATAAGTTAAGTATTCTTACCTTAGTACTTAGTTAAAGCACCTTTGACAGCAATTGCTTCCTCAAGTCTTTTTGGATACAGTGTGGCAAGCTTTGTGACCTGATACGGGGATTTACTGCCATTCTTCTCTGCAGATCCTTTAAATCTGGCAGATTGGATGAAGACCTTCGGTGGacagagatttttatttttgggctCAAGGCTGAGCTCTGGCTTGGTCACTCAAGAACATTCAGAACAGTCGTCGCTAAACTACTTCTGCATTATCTCGGTCGTGCGTTTAGAGTCATTGTCCTGTCTGACGTGACGAGAAGAATGTGAATAATCAAGTCAGTGTGTTATTTCTGTTCACAGATTTGGTTTTTGCTTCGTTATGGGGCACCAAACCGATGTAAAAGAACTAGTGGACGAAAGCGAGTCTGTAGTTGCCTTGCTCCACTTGGGTTTGGGCCAGAGTTGCGTTTGAACACACTACAGAGTCTACAATCAACGGCCAACTATCATGTACTCTACCTTTGTCTGtgcatatacaaaaaaagtagcAGTTGATTGGTCTTCGCTTTATTCGTTCTGAACAGCCATGTTGTTATGAAAGCGCAAGGCCATGTGATACTTCGTACAAGCCACGTGAAGGTTCAGATGTGGCAAGGAGTTTAGATTGAGGAGgtgaaaaatgtaagcattttagTGTGAAGGTGAGGTCACAATTACCGCCCTGCAAATTTTCACAGGTGACATCCGGTCATTTCGGGTTGTGAGTCCTCCATGCGGATCTGACGGGCTCGCCCCCAACACAAAGTTACTGTGTGAGACGTGCTTCATACATTGCTACAGTATTGACaatcaaccttttttttgtgtgactgCACCTTTACAAACATGGCGAAATTAAGGAGTCTGAATACTTTTGAATCTACTGTAAGAAGTTCTGTAGTGGTGTTTGCTAACCAAGCATCACAGTTACTGTCGCTCATACTTAGGGCTTACTTGAATATTACACGCAGTGCATATTCAATTCAGTCGTTTCTGTAAAACCAGACCAGTCAAAACGAAATCTCGTCAACCTGACTAACTCCAGGGCTACGGTATTCGACTTGTCCTCCTCTGCCggagtaaatattttttctccatttcgATCGACGGGGCTCCTCGTAGGACCCCAGCAACACATTTTACGCCGACCGACCGATTCTTCAGGGTGCGAAGCACCAGAGAGATGTGTTGCTTTGAAAgcgtatgtatatatgcaatTATTCTGTAAATATACATGAGCAGGATCAATCATTCTTTGTACACTGATGTCAAATTCTTTCCAAACAGTACATTGGCAGGACCTACTTTTAACAGCCGACTTTACCCGACATCATGAGTTGTCGAACAGCGTCCAATCGAGTCAAGTGTCGGTcattatggtcatgatcttttTGAGCAGTGACTTATGGCCTCTTAGAGCTTTGCACTTTCTTTATAGATGTACTGCtcatatttttgtagttttcacCCTACAATTGTaagcactgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaaaagaaaatgcactgAAAGAGGTTATTTACATTGAATCTGATTATTTGCTAATGTTCACAGGTATCGAAGAAATGTATTCAGTCAGTTACGCTAAACAATTTTTCTTGTGTTGTGGCAGACTGACTATGTGAAGACTTTATTGAACCAACATGGCATTTTCTTCGTTTTTTTGCTATACAGATTTCTGTGTGTTCTAATAGCCAGCCTGTACTTTATAATCCATTCTGTACAGTTCTAATAGATGTCTATATAAATAGTATGTTCTCTATATATTCTGTTTCAAACAGGCATCATGTCAAACGTGTGACATTGTAAAGGGAAGTAAAACATGTCTAATGGGCCTCCGGCAATATGTGAGtgtaaatacagtttattttgcgtgacaatgtttttttttttttcttgtggttGATCATAATAAAAgtatgatttcatttttttatatatctgtaATGGATCAACTAGCCTTTTCCCCTGTGTAGTAAACAATTTGATGTGACCGACGCTTACtgcacccttttttttttttatttaaattgaggGTTGATTCACGTCCAGGGGGAAAGAGCCAAGAGAACCCCCCCCCCCTTCCTCAATTGATTTCTGGAAAGCTCTTAACATTGTATATGAATGAACTGTGACTGAGTACTGGAACActgtttatgcattattttgtaAGCCAAGATTTTATGCTTTGTCGGGTGAATCTCAATTAAAGTGTCGAGAAATGTCCTGGACAACCCAAAAGAGAAACAATACATGAAAAGATAAGCCTATTTAAGgcgattttttttatattgggATAAAATATATCCTGGACATTTCTTTGTGAAATGCACCCATTTAGGCAACTAGAATTAGAACATTTGTTcccatttcttttatttgtttagctgGATCACTGgttgtgagtgagtgtgtgcgcgagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcccgGCAGACTCAATCTCTCACGGCTTTAGGTGTCAGTACTCTATGCTTGTGCATCCTGTGAGAAGCTTCTCTGCAGTCAGTGGAAATGTTCCTTGTAATactgtgcatttaataaaagtgGTATGTCTTACTA

Function

symbol description
ntrk2b Predicted to enable brain-derived neurotrophic factor binding activity and brain-derived neurotrophic factor-activated receptor activity. Acts upstream of or within neuromast primordium migration. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in gut and nervous system. Human ortholog(s) of this gene implicated in Alzheimer's disease; autistic disorder; developmental and epileptic encephalopathy 58; major depressive disorder; and morbid obesity. Orthologous to human NTRK2 (neurotrophic receptor tyrosine kinase 2).

NR:

description
BDNF/NT-3 growth factors receptor-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0005030 neurotrophin receptor activity molecular_function

KEGG:

id description
K04360 NTRK2, TRKB; neurotrophic tyrosine kinase receptor type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239342.1 True 8494 mRNA 0.45 18 24166208 24187485

Neighbor

gene id symbol gene type direction distance location
tmem150ab tmem150ab,LOC107684378,LOC107600579,LOC107572579,LOC107728219,LOC107691718 coding downstream 68034 24092380 ~ 24098174 (-)
fkbp6 fkbp6,LOC107695148,LOC107600609,LOC107691791,LOC107728208,LOC103911693,LOC107730305 coding downstream 79704 24082446 ~ 24086504 (-)
fzd9a LOC107600608,LOC107728207,LOC107691792,LOC107695150,LOC107572577,LOC107730317 coding downstream 93345 24070279 ~ 24072863 (-)
mrm1 mrm1,LOC107695155,LOC107603181,LOC107730354 coding downstream 123471 24039706 ~ 24042737 (-)
lhx1b lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180 coding downstream 169932 23991291 ~ 23996276 (-)
pcsk5a pcsk5a,LOC107728213,LOC107691788,LOC107684380,LOC107730328,LOC107596014,LOC107600598 coding upstream 42861 24230346 ~ 24252631 (-)
LOC122345102 LOC107691787,LOC107600611,LOC107684345,LOC107595997,LOC107684346 coding upstream 65848 24253333 ~ 24264718 (-)
LOC122345313 LOC107681049,LOC107706956,LOC107574963 coding upstream 111045 24298530 ~ 24317831 (-)
cd180 LOC107742410,LOC107681052,LOC107600612 coding upstream 219510 24406995 ~ 24409513 (-)
pmchl LOC107683707,LOC107575048,LOC107738923,LOC107596031,LOC107730319,LOC107684382 coding upstream 342923 24530408 ~ 24530963 (-)
G39059 NA non-coding downstream 58945 24101841 ~ 24107263 (-)
G39057 NA non-coding downstream 77396 24087880 ~ 24088812 (-)
G39050 NA non-coding downstream 96294 24068630 ~ 24069914 (-)
G39034 NA non-coding downstream 187681 23977176 ~ 23978527 (-)
G38982 NA non-coding downstream 263310 23902619 ~ 23902898 (-)
G39120 NA non-coding upstream 24957 24212442 ~ 24212759 (-)
G39121 NA non-coding upstream 27041 24214526 ~ 24215160 (-)
G39122 NA non-coding upstream 30615 24218100 ~ 24218430 (-)
G39123 NA non-coding upstream 31508 24218993 ~ 24219527 (-)
G39137 NA non-coding upstream 89989 24277474 ~ 24280889 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 168469 23979664 ~ 23997739 (-)
G38973 NA other downstream 278528 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 409620 23751880 ~ 23756588 (-)
LOC122345364 NA other downstream 560460 23602236 ~ 23605748 (-)
nrgna nrgna other downstream 1034200 23127212 ~ 23132008 (-)
G39113 NA other upstream 10220 24197705 ~ 24200496 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other upstream 77979 24265464 ~ 24277304 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 400239 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 559187 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 566717 24754202 ~ 24758668 (-)

Expression


Co-expression Network