LOC122345314 (fer,LOC107709787,LOC107691727,LOC107721649,LOC107663784,LOC107564044,LOC107603170)


Basic Information

Item Value
gene id LOC122345314
gene name fer,LOC107709787,LOC107691727,LOC107721649,LOC107663784,LOC107564044,LOC107603170
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23394164 ~ 23411152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239344.1
CCCACATCTTCTCTTAACAGCAGTAACAATGCAGACCTAAGCAGCACAGCCCGTTGAacgagagagagcaagagagagagagagacagaaagagagagagagagagagagaaagtgcgTGCCTTTCGAGCAAGATGGGGTTCGGCCAGGACCTGCGCAACTCCCACGAGGGTCTGGTGAAGCTGCAGGACTGGGAGCTGAAGCTGCTGGAGACGGTGAAGCGCTTCATGACCCTGCGGGTGAAGAGCGATAAGGAATATGCATCTCTCCTGCTCAACATCAGTCAGCAGGTGGACAAGCATGACAACTCCTCTCAGATTAACTATGTCAGTACGGTCTCCAAGTCGTGGACTCACATGGTTCAGCAGACGGAGCAGTTGAGCAAGATTATGAAGTGCCACGCTGAGGAGCTCAACTCAGGACCTCTCCACCGACTCACAATGATGATCAAAGACAAGCAGCAGGTGAAGAAGAGTTACCAGAGCCTCCACCAGCAGATCGAGTCGGAGATGCACAAGGTAACTAAAAACGATCTTGAGAAGTTGAAATGCACCTACAGGCAGTTAACTAAGGACGCTGTTTTAGCAAGAGACAAATACAAGGAGGCTGTTGTAAAAGGCAAGGAGACTGAGAAAGCTCGTGAGCGTTACGACAAAGCCACCATGAAACTGCATAACCTGCACAACCAGTATGTGCTAGCGGTGAAAAGCGCACAGCTGCATCAGGAGCACTATCACGAGACTGCACTGCCTCTGCTGCTGGACTCCCTGCAGAAGATGCAGGAGGAGATGATCAATGCACTTAAGGGTATTCTGGAGGAGTACAGTGAAATCACCAGCCTGTTAACAGATGAAATAGTAAAGGTCCACAAAGAAATACACACTTCCATCGACCAAATCGATCCACTGTCAGAGTATGACAACTTCATCGAAGTTTATAAATCACCAGAAGCCAAAGAACCAAATGTAGAATTTGATGCAACGCTATTAGAAGAAACCGAGAATCTTCAAGCAAATGAGATTCTGTGGAATAACTTGACAGCAGACAGTTTACAAGCAATGCTGAAGTCCAGCTCAGAGGAGCTGCTCCTAACCCAGCAGAGTCTACGCAGCAAAGAGGAGCTCATGCTGGACCTGGAGAACAAAATCGAGGAATCTACCAAAACCTATGAGAAGAAATCCGACGTGGTGTTGTTACTCAGTCAGAAGCAGTCTCTGGAGGAGTTGAGACAGACGGTCCAGCTGCTGCGCTGTTCGGAGGCCAAACTGATGGCACAGAGAGAACTACTAGAACAGAAGATGCAAGAGAACGAGGGCAAAGAACCTCCGCCTGTCGTCAATTATGAAGAGGATGCCCGCTCAGTCAACTCAATGGACAAAAGCAAAGACAAGGTATCGAAATTCGACACCCTCAGACACTCCATCGCTGGAATCATCCGCTCGCCCAAGTCTGTGCTTGGCTCTTCATCATTTTTTGATGTGATACCCACCAGTGAGAAACCGCTGGGCGAGCAAGAGTGGTATCACGGGGCCATTCCCAGGACAGAGGCCCAGGAGCTGCTGAAACAGCAGGGAGACTTCCTGGTGCGCGAGAGCCACGGCAAACCTGGAGAATATGTGCTGTCTGTGTTCTCAGATGCCCAGCGCAGACATTTCATCATTCAGTTTGCTGATAACCAGTACAGATTTGAAGGCACTGGCTTCCCCACCATCCCACAGCTCATAGAGCATCATTACACAACTAAGCAAGTCATCACCAAGAAATCTGGGGTCGTGCTCCTGAACCCTGTCATAAAGGATAAGAAATGGATTCTCAATCACGAGGATGTCATTCTCGGAGAACTCCTCGGGAAAGGAAATTTTGGCGAGGTTTTCAGAGGAACGCTGCGAGATAAAACTCCGGTGGCTGTGAAAACTTGTAAGGAAGATCTCCCACAAGACCTCAAGATAAAGTTCCTCTCAGAAGCCAGGATCCTGAAGCAGTATGATCACCCCAACATTGTGAAGTTAATAGGCGTCTGTACCCAACGGCAGCCCATTTACATAGTAATGGAGCTCGTACCAGGCGGGGACTTTTTATCATTCTTAAGGAAGAAAAAAGAGGACCTCAAGACAAAGCAACTGGTAAAATTTGCATTAGACGCTGCTGCCGGAATGGCGTACCTGGAGCTGAAGAACTGCATACACAGGTGAGGAAAATAATGTTCCGGATG
>XM_043239345.1
CCACATCTTCTCTTAACAGCAGTAACAATGCAGACCTAAGCAGCACAGCCCGTTGAacgagagagagcaagagagagagagagacagaaagagagagagagagagagagaaagtgcgTGCCTTTCGAGCAAGATGGGGTTCGGCCAGGACCTGCGCAACTCCCACGAGGGTCTGGTGAAGCTGCAGGACTGGGAGCTGAAGCTGCTGGAGACGGTGAAGCGCTTCATGACCCTGCGGGTGAAGAGCGATAAGGAATATGCATCTCTCCTGCTCAACATCAGTCAGCAGGTGGACAAGCATGACAACTCCTCTCAGATTAACTATGTCAGTACGGTCTCCAAGTCGTGGACTCACATGGTTCAGCAGACGGAGCAGTTGAGCAAGATTATGAAGTGCCACGCTGAGGAGCTCAACTCAGGACCTCTCCACCGACTCACAATGATGATCAAAGACAAGCAGCAGGTGAAGAAGAGTTACCAGAGCCTCCACCAGCAGATCGAGTCGGAGATGCACAAGGTAACTAAAAACGATCTTGAGAAGTTGAAATGCACCTACAGGCAGTTAACTAAGGACGCTGTTTTAGCAAGAGACAAATACAAGGAGGCTGTTGTAAAAGGCAAGGAGACTGAGAAAGCTCGTGAGCGTTACGACAAAGCCACCATGAAACTGCATAACCTGCACAACCAGTATGTGCTAGCGGTGAAAAGCGCACAGCTGCATCAGGAGCACTATCACGAGACTGCACTGCCTCTGCTGCTGGACTCCCTGCAGAAGATGCAGGAGGAGATGATCAATGCACTTAAGGGTATTCTGGAGGAGTACAGTGAAATCACCAGCCTGTTAACAGATGAAATAGTAAAGGTCCACAAAGAAATACACACTTCCATCGACCAAATCGATCCACTGTCAGAGTATGACAACTTCATCGAAGTTTATAAATCACCAGAAGCCAAAGAACCAAATGTAGAATTTGATGCAACGCTATTAGAAGAAACCGAGAATCTTCAAGCAAATGAGATTCTGTGGAATAACTTGACAGCAGACAGTTTACAAGCAATGCTGAAGTCCAGCTCAGAGGAGCTGCTCCTAACCCAGCAGAGTCTACGCAGCAAAGAGGAGCTCATGCTGGACCTGGAGAACAAAATCGAGGAATCTACCAAAACCTATGAGAAGAAATCCGACGTGGTGTTGTTACTCAGTCAGAAGCAGTCTCTGGAGGAGTTGAGACAGACGGTCCAGCTGCTGCGCTGTTCGGAGGCCAAACTGATGGCACAGAGAGAACTACTAGAACAGAAGATGCAAGAGAACGAGGGCAAAGAACCTCCGCCTGTCGTCAATTATGAAGAGGATGCCCGCTCAGTCAACTCAATGGACAAAAGCAAAGACAAGGTATCGAAATTCGACACCCTCAGACACTCCATCGCTGGAATCATCCGCTCGCCCAAGTCTGTGCTTGGCTCTTCATCATTTTTTGATGTGATACCCACCAGTGAGAAACCGCTGGGCGAGCAAGAGTGGTATCACGGGGCCATTCCCAGGACAGAGGCCCAGGAGCTGCTGAAACAGCAGGGAGACTTCCTGGTGCGCGAGAGCCACGGCAAACCTGGAGAATATGTGCTGTCTGTGTTCTCAGATGCCCAGCGCAGACATTTCATCATTCAGTTTGCTGATAACCAGTACAGATTTGAAGGCACTGGCTTCCCCACCATCCCACAGCTCATAGAGCATCATTACACAACTAAGCAAGTCATCACCAAGAAATCTGGGGTCGTGCTCCTGAACCCTGTCATAAAGGATAAGAAATGGATTCTCAATCACGAGGATGTCATTCTCGGAGAACTCCTCGGGAAAGGAAATTTTGGCGAGGTTTTCAGAGGAACGCTGCGAGATAAAACTCCGGTGGCTGTGAAAACTTGTAAGGAAGATCTCCCACAAGACCTCAAGATAAAGTTCCTCTCAGAAGCCAGGATCCTGAAGCAGTATGATCACCCCAACATTGTGAAGTTAATAGGCGTCTGTACCCAACGGCAGCCCATTTACATAGTAATGGAGCTCGTACCAGGCGGGGACTTTTTATCATTCTTAAGGAAGAAAAAAGAGGACCTCAAGACAAAGCAACTGGTAAAATTTGCATTAGACGCTGCTGCCGGAATGGCGTACCTGGAGCTGAAGAACTGCATACACAGAGATCTGGCTGCCCGTAACTGTCTCGTGGGTGAGGAGAGCGTGGTGAAGATCAGTGATTTCGGTATGTCTCGTCAGGAGCAGGACGGGGTGTATTCTGCTACAGGAGGAATGAAGCAGATCCCAGTTAAATGGACCGCACCAGAGGCCCTCAATTATGGGCGATACACCACCGAGAGCGACGTGTGGAGCTTCGGAGTGCTGCTGTGGGAGACCTTCTCCAGAGGAGTCACGCCGTACACCGTACCCCTTAACATGAATAACCAACAGACCAGAGACGAGGTGGAGAAAGgGTATCGCATGCCGGCCCCAAATAACTGTCCGGACGAAATCTACGCCCTCATGTGTCAGTGCTGGCAGTACGACCCACGAAACCGACCCTCGTTTCGCAAACTAAAGGCGGATCTGTATGCTTTATGTCAGTAAAATCACGTGTGCAGCTCGTCTTATGATGAGGCCAAagcaaagatttatttttttaatttgtgtgccACATAAAAGAACATTATAATTAAGAATATTCGAttttatagaaatgttttgaatgctGTGCAGTGTggtccaaatgtttttttttatttgtgacatcctgatgtttaaataataaataaattattttttggacTTGACGTGCATGATAGCATAACATGTACATTTACCCTTTACAGTATAaagaaattgtaaataaatctattaataattattaataatagcaaCCTCTTGTTTAGTGATCATTTAAATTGATTAGTCTAAATGTCAGAAacgtactgtaaataaatgtagtaatCATTAGcgataataatatttaaaatgaccaaaaattcatttataaaattaaaaattacaaaaaagatcACAAGCATCACATGAcgttgaagactggagtgatgagctttacatcactgaaataaattacatttgaaaacattttaaaataaaaaaaatgtaaaatgtg
>XM_043239346.1
CCCACATCTTCTCTTAACAGCAGTAACAATGCAGACCTAAGCAGCACAGCCCGTTGAacgagagagagcaagagagagagagagacagaaagagagagagagagagagagaaagtgcgTGCCTTTCGAGCAAGATGGGGTTCGGCCAGGACCTGCGCAACTCCCACGAGGGTCTGGTGAAGCTGCAGGACTGGGAGCTGAAGCTGCTGGAGACGGTGAAGCGCTTCATGACCCTGCGGGTGAAGAGCGATAAGGAATATGCATCTCTCCTGCTCAACATCAGTCAGCAGGTGGACAAGCATGACAACTCCTCTCAGATTAACTATGTCAGTACGGTCTCCAAGTCGTGGACTCACATGGTTCAGCAGACGGAGCAGTTGAGCAAGATTATGAAGTGCCACGCTGAGGAGCTCAACTCAGGACCTCTCCACCGACTCACAATGATGATCAAAGACAAGCAGCAGGTGAAGAAGAGTTACCAGAGCCTCCACCAGCAGATCGAGTCGGAGATGCACAAGGTAACTAAAAACGATCTTGAGAAGTTGAAATGCACCTACAGGCAGTTAACTAAGGACGCTGTTTTAGCAAGAGACAAATACAAGGAGGCTGTTGTAAAAGGCAAGGAGACTGAGAAAGCTCGTGAGCGTTACGACAAAGCCACCATGAAACTGCATAACCTGCACAACCAGTATGTGCTAGCGGTGAAAAGCGCACAGCTGCATCAGGAGCACTATCACGAGACTGCACTGCCTCTGCTGCTGGACTCCCTGCAGAAGATGCAGGAGGAGATGATCAATGCACTTAAGGGTATTCTGGAGGAGTACAGTGAAATCACCAGCCTGTTAACAGATGAAATAGTAAAGGTCCACAAAGAAATACACACTTCCATCGACCAAATCGATCCACTGTCAGAGTATGACAACTTCATCGAAGTTTATAAATCACCAGAAGCCAAAGAACCAAATGTAGAATTTGATGCAACGCTATTAGAAGAAACCGAGAATCTTCAAGCAAATGAGATTCTGTGGAATAACTTGACAGCAGACAGTTTACAAGCAATGCTGAAGTCCAGCTCAGAGGAGCTGCTCCTAACCCAGCAGAGTCTACGCAGCAAAGAGGAGCTCATGCTGGACCTGGAGAACAAAATCGAGGAATCTACCAAAACCTATGAGAAGAAATCCGACGTGGTGTTGTTACTCAGTCAGAAGCAGTCTCTGGAGGAGTTGAGACAGACGGTCCAGCTGCTGCGCTGTTCGGAGGCCAAACTGATGGCACAGAGAGAACTACTAGAACAGAAGATGCAAGAGAACGAGGGCAAAGAACCTCCGCCTGTCGTCAATTATGAAGAGGATGCCCGCTCAGTCAACTCAATGGACAAAAGCAAAGACAAGGTATCGAAATTCGACACCCTCAGACACTCCATCGCTGGAATCATCCGCTCGCCCAAGTCTGTGCTTGGCTCTTCATCATTTTTTGATGTGATACCCACCAGTGAGAAACCGCTGGGCGAGCAAGAGTGGTATCACGGGGCCATTCCCAGGACAGAGGCCCAGGAGCTGCTGAAACAGCAGGGAGACTTCCTGGTGCGCGAGAGCCACGGCAAACCTGGAGAATATGTGCTGTCTGTGTTCTCAGATGCCCAGCGCAGACATTTCATCATTCAGTTTGCTGATAACCAGTACAGATTTGAAGGCACTGGCTTCCCCACCATCCCACAGCTCATAGAGCATCATTACACAACTAAGCAAGTCATCACCAAGAAATCTGGGGTCGTGCTCCTGAACCCTGTCATAAAGGATAAGAAATGGATTCTCAATCACGAGGATGTCATTCTCGGAGAACTCCTCGGGAAAGGAAATTTTGGCGAGGTTTTCAGAGGAACGCTGCGAGATAAAACTCCGGTGGCTGTGAAAACTTGTAAGGAAGATCTCCCACAAGACCTCAAGATAAAGTTCCTCTCAGAAGCCAGGATCCTGAAGCAGTATGATCACCCCAACATTGTGAAGTTAATAGGCGTCTGTACCCAACGGCAGCCCATTTACATAGTAATGGAGCTCGTACCAGGAGGGGACTTTCTAACCTTTCTGCGCACCGAGGGCCACAACCTGAAGACCAAGATGTTGATCAAGATGGCGGACAACGTGGCGTCTGGCATGGCGTACCTAGAAAGCAAGAAGTGCATTCATCGAGATCTGGCTGCCCGTAACTGTCTCGTGGGTGAGGAGAGCGTGGTGAAGATCAGTGATTTCGGTATGTCTCGTCAGGAGCAGGACGGGGTGTATTCTGCTACAGGAGGAATGAAGCAGATCCCAGTTAAATGGACCGCACCAGAGGCCCTCAATTATGGGCGATACACCACCGAGAGCGACGTGTGGAGCTTCGGAGTGCTGCTGTGGGAGACCTTCTCCAGAGGAGTCACGCCGTACACCGTACCCCTTAACATGAATAACCAACAGACCAGAGACGAGGTGGAGAAAGgGTATCGCATGCCGGCCCCAAATAACTGTCCGGACGAAATCTACGCCCTCATGTGTCAGTGCTGGCAGTACGACCCACGAAACCGACCCTCGTTTCGCAAACTAAAGGCGGATCTGTATGCTTTATGTCAGTAAAATCACGTGTGCAGCTCGTCTTATGATGAGGCCAAagcaaagatttatttttttaatttgtgtgccACATAAAAGAACATTATAATTAAGAATATTCGAttttatagaaatgttttgaatgctGTGCAGTGTggtccaaatgtttttttttatttgtgacatcctgatgtttaaataataaataaattattttttggacTTGACGTGCATGATAGCATAACATGTACATTTACCCTTTACAGTATAaagaaattgtaaataaatctattaataattattaataatagcaaCCTCTTGTTTAGTGATCATTTAAATTGATTAGTCTAAATGTCAGAAacgtactgtaaataaatgtagtaatCATTAGcgataataatatttaaaatgaccaaaaattcatttataaaattaaaaattacaaaaaagatcACAAGCATCACATGAcgttgaagactggagtgatgagctttacatcactgaaataaattacatttgaaaacattttaaaataaaaaaaatgtaaaatgtg

Function

symbol description
fer Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Acts upstream of or within blood vessel development and convergent extension involved in gastrulation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in brain; head; intermediate cell mass of mesoderm; and pectoral fin. Orthologous to human FER (FER tyrosine kinase).

NR:

description
PREDICTED: tyrosine-protein kinase Fer-like

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K08889 FER, TYK3; tyrosine-protein kinase Fer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239344.1 False 2211 mRNA 0.49 15 23397430 23411152
XM_043239345.1 False 3139 mRNA 0.46 18 23394164 23411151
XM_043239346.1 True 3140 mRNA 0.46 18 23394164 23411152

Neighbor

gene id symbol gene type direction distance location
hepacamb LOC107712936,LOC107556427,LOC107744315,LOC107691804,LOC107664307,LOC107600797 coding downstream 275020 23105929 ~ 23119144 (-)
ccdc15 ccdc15,LOC107691749,LOC107712940,LOC107556428,LOC107744316 coding downstream 289189 23098840 ~ 23104975 (-)
slc37a2 slc37a2,LOC107691751 coding downstream 296905 23086295 ~ 23097259 (-)
pde9ab LOC107664292,LOC107556423,LOC107600796,LOC107712935,LOC108427349,LOC108259736,LOC571737 coding downstream 309239 23078556 ~ 23084925 (-)
oafb LOC107691805,LOC107744339,LOC107556424,LOC107664291 coding downstream 317770 23070110 ~ 23076394 (-)
btg4 btg4,LOC107745130,LOC107691802,LOC107600778,LOC107709986 coding upstream 35545 23446697 ~ 23448138 (-)
ppp2r1ba ppp2r1a,LOC107663771,LOC107691746,LOC107745127,LOC107603174,LOC108428700,LOC103032850 coding upstream 83986 23495138 ~ 23505743 (-)
alg9 alg9,LOC107691744,LOC107745128 coding upstream 99026 23510178 ~ 23518148 (-)
fdxacb1 fdxacb1,si:dkey-71l1.3,LOC107745124,LOC107574693 coding upstream 108108 23519260 ~ 23523750 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203,LOC107663780 coding upstream 115426 23526578 ~ 23528254 (-)
G38769 NA non-coding downstream 36017 23357574 ~ 23358147 (-)
G38767 NA non-coding downstream 48367 23345589 ~ 23345797 (-)
G38747 NA non-coding downstream 356694 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 517727 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 601111 22791690 ~ 22793053 (-)
G38892 NA non-coding upstream 255689 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 491467 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 566024 23977176 ~ 23978527 (-)
G39050 NA non-coding upstream 657478 24068630 ~ 24069914 (-)
G39057 NA non-coding upstream 676728 24087880 ~ 24088812 (-)
nrgna nrgna other downstream 262156 23127212 ~ 23132008 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1510142 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1568059 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1774581 21612688 ~ 21619583 (-)
G38359 NA other downstream 2025116 21364238 ~ 21369048 (-)
LOC122345364 NA other upstream 191084 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 340728 23751880 ~ 23756588 (-)
G38973 NA other upstream 476151 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 568512 23979664 ~ 23997739 (-)
G39113 NA other upstream 786553 24197705 ~ 24200496 (-)

Expression


Co-expression Network