cd180 (LOC107742410,LOC107681052,LOC107600612)


Basic Information

Item Value
gene id cd180
gene name LOC107742410,LOC107681052,LOC107600612
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24406995 ~ 24409513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239350.1
TCTATTTTACCTATATATTTGAATGAAGAGGAGacacttttctctttttgtcctGTACACTATGGAGAAGCATTTTGTTTTCTACACGTTATGTTACACTATTCTGATTTACCTCTTACCGCATAATGAAGCAACACCATGGGCTAGGAGACAGTGTCAACAGATAGCAAATGGCTATGATTGTAGTGATATGGACCTACAAGTCATTCCGGATGAGATACCAAATTCTGtccaaatttttaaatttagcttCAACTATCTTCCTGCCCTATACAAGTTTACTTTTCAGAGGCTAACAAGCTTGATTTATTTAGACCTGACAAGATGTGGCATCACTTTCGTgtatgaagacatttttaaatatcagtctGACTTGGAAGCCCTTATCCTAATAGGAAACCCACTTGTGTTTAttgcagaaaaagctttttctggaCCTCTAGCGCTCAAATATCTAAGCCTTGCTCAATCAAATATACAAAGCCTATCAGACATCCCGTCAGATAATCTTGCATATCTGGAAGTTCTGGACCTTGGGGGAAGTGAAATTCGCTCACTAGACGGACTAAGCACTTTCAACTGGCAAAACATGCACCGCCTACGGATGGACATGAACTCCATTGAGCGGATAAGAGAAGATGATTTAGCACCACTCCGCAATGTGCACGGGATAAGCGTCAGCTTTAAAGGGAACGATTTTGTCGATATTGAACCAGGTGCGTTTAAGTCACTGAATTTGAGTAGTCTTGATTTCAGTGGCTGTCTCAGCAAGATGACCTTCTCCTCTCTACTGAAAGGGCTTGAAGGTCTTAATAGCAACAGACTCAACCTGGGATTGTATGAAACCGATCCAAAAGTGCACATACCATCTGCTGCACTACAGTCTTTGTGCAAGGTCTTCGTTACTGAGCTGGATTTCCAGCTTCAGCATTTCTTAGACCCGAATAATTTTCCATTTGATTGCCTTAAAGGGCTTAAAAAGCTTGACCTTACTAAAGCCCACCTGGATTTACTGCAGTTCAACATGACTGGCCCATCTACATTGTCCTATCTGGTGCTAGATGAGAACCGCTTTAACGATGTCTGCAACATCAACACCAGAAACTTCCCCTTGCTTACGTACTTGTCTGTGAGCGGGAACTCAAAGCAACTCAATTTTAGCAGCAAATGCTTGGAGAGTCTTGGAAACCTTGAAGAGCTGGATCTCAGTCTTAGTTTAGTAAATCCCAGGGGACCCTGTTGCAATGACCAGCTGTTTGGTCTGAGAGAACTGAAGCTCCTCAATCTCAGCTATGGCTCACAAATGTTGTGGAGTTCACAGCCTTTCGGTGCAACTCCACAGCTGGAGCACTTGGACTTCAGCCATTCATACTACACTTTGAATGACAGCTCACCTTTCAGCAATCTACAGAATCTCAAAACTCTGAATCTTTCCTGGTCAAATACCAGTCTGACAAACATGCACCTTTTCAAAGGGTTGAAAAATTTGCAACTCCTCAATCTGAAGGGGAACACAGTTCAACGAGGGGTTCTTACCCAGATGGAGCTCTTTAAATACGTCCCTCTTTTGGAAACCCTCATTCTGTCTTCGTGCAAAATAACTGCTTTTGAAGAGAATTTGTTTAAAGGTCTCGTGCATCTCAGGCAAGTAGACTTGAGTGAAAACACCTTGGTCAAACTGAGCACCTCTGGATTTTACTCTCTGAATTTTCTACAACTTAACTATGCCAGTAATGTCATTGTGACAGTGGATGTTGCAAGTGTTAAGGATCTGGGAAATAATAGTACTGttgatctgagctacaatcccCTGGTATGTAACTGTAGCAACTTTGAGTTCATCAACTGGgttgtgaaaaacaaaatcaaagtcAAACACTTAATGGAGACTACTTGCAATGGCACAGGAACAAGGATCGTCGATGCTGAACTTCAGTGTGAATTACCTGTCATTGTACTTGCATTTGTTGTAGTTCTAGTTGCAATCTTAATTGCATTGGCCATTTTCTGCCTTGTCAGAAGAATTAGAAAATACTCAAGATATTCACAACTGTGAGTTAAGAAGAGTTTGTTTGGTCTCTCTCCAAATGCAGaccacataaacataaaacatgaaaattggCTTTAAGTTGGAgatcaacatcaacaacaaagcaaaaactGACCAGAAAACAAATTGACTAAACTCTGTCTTCAAATAGCATATCTAAGTAGTGTCCTCAAATCTACTTCCTTGATTATGAAGATTTGAagtctttaaagaaaaaaggaaaagacaataaaaggtcattttg

Function

NR:

description
PREDICTED: CD180 antigen-like

GO: NA

KEGG:

id description
K06555 CD180; CD180 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239350.1 True 2294 mRNA 0.40 3 24406995 24409513

Neighbor

gene id symbol gene type direction distance location
LOC122345313 LOC107681049,LOC107706956,LOC107574963 coding downstream 89164 24298530 ~ 24317831 (-)
LOC122345102 LOC107691787,LOC107600611,LOC107684345,LOC107595997,LOC107684346 coding downstream 142277 24253333 ~ 24264718 (-)
pcsk5a pcsk5a,LOC107728213,LOC107691788,LOC107684380,LOC107730328,LOC107596014,LOC107600598 coding downstream 154364 24230346 ~ 24252631 (-)
ntrk2b ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341 coding downstream 219510 24166208 ~ 24187485 (-)
tmem150ab tmem150ab,LOC107684378,LOC107600579,LOC107572579,LOC107728219,LOC107691718 coding downstream 308821 24092380 ~ 24098174 (-)
pmchl LOC107683707,LOC107575048,LOC107738923,LOC107596031,LOC107730319,LOC107684382 coding upstream 120895 24530408 ~ 24530963 (-)
npr2 npr2,LOC107559735,LOC107746469,LOC107730344,LOC107684353,LOC107595992,LOC107683705,LOC108260050 coding upstream 136635 24546148 ~ 24585135 (-)
tprn tprn,LOC107559738,LOC107746472,LOC107684357,LOC107595990,LOC107730352,LOC107697983,LOC107734963 coding upstream 187574 24597087 ~ 24613743 (-)
tmem203 tmem203,LOC107559731,LOC107697982,LOC107684383,LOC107730349,LOC107580151 coding upstream 205845 24615358 ~ 24616916 (-)
traf2b traf2,LOC107697985,LOC107746475,LOC107567702 coding upstream 223789 24633302 ~ 24652541 (-)
G39137 NA non-coding downstream 126106 24277474 ~ 24280889 (-)
G39123 NA non-coding downstream 187468 24218993 ~ 24219527 (-)
G39122 NA non-coding downstream 188565 24218100 ~ 24218430 (-)
G39121 NA non-coding downstream 191835 24214526 ~ 24215160 (-)
G39120 NA non-coding downstream 194236 24212442 ~ 24212759 (-)
G39274 NA non-coding upstream 5387 24414900 ~ 24490792 (-)
G39285 LOC107738919,LOC107681053,LOC107600587,LOC107595995 non-coding upstream 61098 24470611 ~ 24479055 (-)
G39296 NA non-coding upstream 110154 24519667 ~ 24520387 (-)
G39298 LOC107683704,LOC107738921,LOC107600589,LOC107595993,LOC107730350 non-coding upstream 112049 24521562 ~ 24522021 (-)
LOC122345299 NA non-coding upstream 214046 24623559 ~ 24624878 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other downstream 129691 24265464 ~ 24277304 (-)
G39113 NA other downstream 206499 24197705 ~ 24200496 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 409256 23979664 ~ 23997739 (-)
G38973 NA other downstream 519315 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 650407 23751880 ~ 23756588 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 178211 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 337159 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 344689 24754202 ~ 24758668 (-)
G39413 LOC102215562 other upstream 872373 25281886 ~ 25282286 (-)
LOC122344921 NA other upstream 1152461 25561974 ~ 25568686 (-)

Expression


Co-expression Network