CI01000004_15999644_16005705


Basic Information

Item Value
gene id CI01000004_15999644_16005705
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 15999495 ~ 16006425 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_15999644_16005705.mRNA
ACTGATTTCAAACAGTTTCCGAACAGATGGGATACTCAAACAAACAGCAGTGCCAGTGTTAACACTTTTTGAGGAATAAACCTAAAGAGTGACTTAAAGCATATTAACTTACAATAGACAAAAAAATAAAAACATCACCTTATATATAACATCATAAAATGACTTTAATAGAGATTTGTGGGCGATTACCTCATTTATCTGGTAGTCAAATAGAACAGCTTTCTAAAAATAGTTGATTAGGAGACAGATTAACTAAATAGTAAGCTAATTAGTTTGTACCAAATGGGTCTGTATTAATCTGTGTGCCATGATTTGACTTCTTATGGTCACCAATCATTTCCTTGATTCGACTTAAAGGGATAGTTCACCCCAAAATGAAAATTTATGAAATCATTTACTCACCCTCAAGTTGTCCAGAATCTGCATGAGTTTCTTTCTTTTGTTGAACACAAAATAAGATATTTTAAGATAAACCATTGATGGACCAATGGTATCCTATGGAAGTCAATGGCTACCGTCACCTGTTTGGTTACCCATATTCTTCAAAATATCTTCTTTTGTGTTCAACAGTAGAAAGAAACTCACACAGGTTTGGAACAACATGAGGGTGAGTACATGATGACAGAATATTCATTTGTGTGTGAACTATCCCTTTAATTGGACACTGTTAAAATTATTAAATTATTGTTAAAATTAATTGTTCACAATTTTACAGCTACTATGGGCTCCATGGAGGAAGAGCACACATGCCCCATGTGTCGTGACGTGTTTGGTCGAGCTCAACCCTTTCCCTGCGGCCACAGCTTCTGCCCGGCCTGTGCTCAAGAGGCCTGGAGCTCGAGTGCTGGCTGTGGCAAGCGAAGATTTGTATGCCCACAATGCCTGGAGGAGCAGGGGCTGGTTGAATGTGACTGTTGTCCGGAAGATGAGGTCCAAGCAGCAGTGAAGACCTGCTTGCGATGTGAGATCTCTCTGTGCGAGCAGCATCTGCAGCCACATCTGCAGCGCCCAGCTTACAGCACTCACCTGCTGGTGGAGCCGTTGATAGACGTATCCCGCCGCAGGTGCCCCGCCCATCAGGAGGTATTCCGACATTACTGCATGGATGACAGGGTGTATGTCTGCCCAGACTGTATTCTGGAGGGACGGCATGCTCAACACCAGGTCAAAGGGGTGAGAAAAGTGGAGGAGGAATACAAAGTCAAATTACAGAGCCTGTTCGAGAAAGCAGAAGAGAAAGTAAAGCAAGGTGAAATTATGCTTCAAGAACATCAGAACGCTTGTCGCACCATCATAGTGTTACAGATGGGCTCAGCCCTGCAGACTCAGGTGGGCCGACTAGTGTCGGCTGTAATAAACATCACTGAGCAGGAGAGACAGCAGGCCATGGAGAGGGTGCAGGAAGACTACAGCAGGGCATACCAGACAGAGGATTCACAGATGATGGCAGATCTCAACTCCCCTCTGTTCACACCACCACAGCCCAGCATGGATAAGAAACGTATCTTAGAGAATGTGGAAAATAAATACAGAGAGTTCATAGCAGAGACCCTGCGCTGCCTAATTGAGCTCAAGAGAGATCTCTTAAGCAGCCCATTAACCTTGGACAAAAACTCAGCCCACCCACTCCTAAATATCTCTGAAGACCTACGGTCAGTGATGAGGGTAAAAAAACGTTTGCCTGTGCCTGAGCATCCGGACCGCTTCGACCACTGGTCTCAGGTGGTCTCCTGTCAGATATTTTCTTCAGGAACCCATTATTGGGAGCTGGAGGTAGAGGGTTTCTGGGATATAGCAGTGACCTACCACAGCATTGGGAGAAAAGCAAAAGAGGGCACAGCCTTTGGCTGCAATAAGATATCCTGGAGCCTGACACAGCAGCATGACAAGAAACTTGCTGCCTGGCATAACCGAAAGAAAACCCACCTCTCTGTGAAAATGTCAGGCAACCATTTGGCAATCGCTTTGGACTATGATTCTGGCTCTATCACCTTTTCAGAAGTAGGATCATCCTCCACCCTGCTCCCACTGCACAATTTCAGCACCAGCTTCACCCAGCCCATCTGCCTGGGCTTTGGCCTCTACAAACCAGAGCTGAACAGCAGGGTCACCATCCTCAAGAAAATATGACTGCATTTACCTGTGAGATTTGGGTAAAGATGGGAACTGTCATTGCTGTTAAAACTTTTAATTCATAAAGAGTTATATGTTTCATGATGGATTAATGATGTTCTGGTTGAAAAGTTAGACTTAGTTTTTCATTTTCTATTATAATTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_15999644_16005705.mRNA True 2279 mRNA 0.44 7 15999495 16006425

Neighbor

gene id symbol gene type direction distance location
CI01000004_15991836_15995032 CBLN12, CBLN3, CBLN1 coding downstream 4311 15991640 ~ 15995184 (-)
CI01000004_15965178_15990162 CHD8 coding downstream 9320 15965120 ~ 15990175 (-)
CI01000004_15956601_15962195 TOX4 coding downstream 36565 15956000 ~ 15962930 (-)
CI01000004_15922924_15923872 NA coding downstream 75623 15922726 ~ 15923872 (-)
CI01000004_15911104_15915972 NA coding downstream 83476 15910936 ~ 15916019 (-)
CI01000004_16079875_16086958 ACIN1, ACIN1A coding upstream 73450 16079875 ~ 16087211 (-)
CI01000004_16092821_16115520 NA coding upstream 86281 16092706 ~ 16115530 (-)
CI01000004_16146406_16149756 NA coding upstream 139651 16146076 ~ 16149756 (-)
CI01000004_16152238_16154327 NA coding upstream 145308 16151733 ~ 16154327 (-)
CI01000004_16155534_16158067 NA coding upstream 148947 16155372 ~ 16158067 (-)
G34830 NA non-coding downstream 348 15998819 ~ 15999147 (-)
G34583 NA non-coding downstream 54831 15930375 ~ 15944664 (-)
G34814 NA non-coding downstream 70745 15928443 ~ 15928750 (-)
G34811 NA non-coding downstream 73234 15926010 ~ 15926261 (-)
G34616 NA non-coding downstream 88824 15906913 ~ 15910671 (-)
G34836 NA non-coding upstream 13133 16019558 ~ 16023123 (-)
G34837 NA non-coding upstream 16819 16023244 ~ 16024781 (-)
G34639 NA non-coding upstream 117135 16123560 ~ 16136696 (-)
G34866 NA non-coding upstream 226886 16233311 ~ 16233711 (-)
G34796 NA other downstream 135747 15860613 ~ 15863748 (-)
CI01000004_15832789_15836192 NA other downstream 163264 15832573 ~ 15836231 (-)
G34633 NA other downstream 211598 15787386 ~ 15787897 (-)
G34718 NA other downstream 717846 15281016 ~ 15281649 (-)
CI01000004_15086759_15087492 NA other downstream 909137 15086671 ~ 15087575 (-)
G34934 NA other upstream 395320 16401745 ~ 16421506 (-)
G34982 NA other upstream 496300 16502725 ~ 16515974 (-)
G34995 NA other upstream 523017 16529442 ~ 16533008 (-)
G34999 NA other upstream 530770 16537195 ~ 16541278 (-)
CI01000004_16596848_16599652 NA other upstream 572242 16596476 ~ 16601205 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016678 trim110 coding NC_007113.7 CM002886.2 38127986 ~ 38131348 (-)