lhx1b (lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180)


Basic Information

Item Value
gene id lhx1b
gene name lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23991291 ~ 23996276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239401.1
ATGCCGCTGGAAAATACTCGCAAATGACCAGGGATGGACGCGATGCGCTTTGAAATCGTTTTTAATTTTTCGTGAAACGAATTAAACGCGTTCATCGTTTTTTGCTCAAGCCTTGGGAGCCCTGGAGACTCCGCGCGCAGATATACAACGAGCAGGCGAACCTTTCCACGACTCCGgctgaagtttgtttttattcatcttaATGATAAACCATCAGCGTATGCTTAATCGTCAGAAGAGGAGCCGGCACTTGTCCGTTTCTGCGCTGCGGGCGAAAACTGGGACGCCGTGTTATACCCAATGCCTGCCTTTTTGATGACTTTTGTTTCCTTGGATCAAGGACCCCGCAGTGTTCTCTAACTTTTGGCACGAGCCGGTTTTTTCGCCTCTCGACAAGGACGGCAAAGTGGTGACCGGAGCCACAAAATATGGTCCACTGTGCTGGATGCGAGAGGCCTATTCTGGACAGATTTCTGCTCAACGTCTTGGACAGAGCCTGGCACGCCAAATGCGTGCAGTGCTGTGACTGTAAATGCAATTTAACCGACAGGTGCTTTTCTAGAGAAGGACGGCTCTACTGCAAAAACGACTTCTTCAGACGTTTCGGCACTAAATGCGGAGGCTGCGCGCAGGGGATCTCGCCCAGCGACCTGGTCCGGAAAGCGCGGAGCAAAGTCTTTCACCTGAACTGCTTCACCTGCATCATGTGCAATAAACAGCTCTCCACCGGCGAGGAACTGTACATTTTAGACGAATACAAATTCGTCTGCAAGGAGGATTACATGAATAACAGCATCGGAAAAGACGCAAACCTTCTGTCAATCACTACGTGCAGTGACCCGAGCCTATCTCCAGAATCTCAGGACCCGCAGGACGACTATAAAGACTCCGAGACCGGACACGTGTCGGACAAGGAGGGGGTTAACAATGAAAACGACGAGCAAAATCTGGGCGGCAAGCGGCGCGGGCCGAGGACTACTATCAAAGCCAAGCAGCTGGAGACCCTGAAAGCCGCCTTCGCCGCCACCCCCAAACCCACGAGACACATCCGGGAGCAGCTGGCGCAAGAGACGGGCCTCAACATGAGGGTCATTCAGGTGTGGTTTCAGAACCGGCGCTCCAAGGAGAGGCGCATGAAGCAGCTGAGCGCGCTGGGAGCCAGGAGACACATGTTTTTCCGCAGCCCGAGGAGAATGAGAGCGCTGGGAGACCGCGTGGAGGCAGGGGAGCTCGTGGCCAACGGACACTTCTCTTATTACGGCGACTATCAAGGCGAATACTACGGCCCGGGATCAAACTACGACTACTTCCCTCAAGGTCCTCCATCCTCCCAAGCACAGACTCCGGGTGACCTGGGATTCATGCCGTCCTCTGGCCCAGCGGGAACGCCTCTAGGGAGCATGGACCACCATCACGGAGCACACCACCCTTCCAATGAGACGCAATGCTTCAGCGACATGATATCTCAGCACCCAGGGGAGTCCCCCAGCCCGGAGCCCAACGCACACAGCATCTCCGCCGACATGTGCGACTCCACTCCACCCTTCACGTCCCTGAGCTCTCTCGCCGGCGGCGGATACAGCAGTCAGCTGTCCTCAGAGATCAACGAGGGCACGGTGTGGTAGCCAACGACAGACTAATGCAGGATACAGCGACGTGGAAGTGTACTGTTCATGTGTGATTTTTCTAGCGACGATATTTctatttagttaatttattgacataattgtctatttatttgtttacctatttatttaatgtatttatctatttaagcaccatttgtgtattttgaaagCGGAATGTTAAATATCGGTCTGCAGACCTTATAGCTGTGCTATAGACAGCGACGGTATAAGAaaagatgtttatatttacaacaCCTGGCGTGTCTGTTCACATGTGTATCATAATTTGACGACGCAGACCTCTTGGCCTTTCGAGGCCTCGCCATAACGACACTTGAAATCATCTCGCACCAAAATCTTTCTCTGCTCTCCATGCGGTGGGGTTACATCTCCATAACGAATTCCACCAAATCTCAGAGCGTTTGCCTTTGAAAGGGAAACTTAAAACTGTTGGGACAAAccctttatttgaaatgaaacatgaCTTGAACTATAAGACAAAGTCTACCttctaaaaatgatttcatataGCCTAGTCAGTGGACAGAGAGCAGTCAattgtttacatgtattttcTTCAGGGGTTTGAATATCaacaatgacttaaaaaaaaccctcttgATACTGACATAAACTTTTTCTTCAAGCAAGAAACCAAACTTTTGtattaattcaatttatatttgagttgtgattcactgtactagtttGTATGATCATGTGTTTGCACAAAGAATACACTAAACTAAAGCATAAATACATGTTGACGA

Function

symbol description
lhx1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in margin. Orthologous to human LHX1 (LIM homeobox 1).
lhx1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including animal organ development; gastrulation; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including animal organ development; mesendoderm development; and somite rostral/caudal axis specification. Predicted to be part of chromatin and protein-containing complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: LIM/homeobox protein Lhx1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09372 LHX1; LIM homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239401.1 True 2398 mRNA 0.49 5 23991291 23996276

Neighbor

gene id symbol gene type direction distance location
tmem232 LOC107691726,LOC107751260 coding downstream 250895 23733743 ~ 23740396 (-)
pja2 LOC107691728,LOC107721647,LOC107709785,LOC107663782,LOC107603188,LOC107564050 coding downstream 306511 23671287 ~ 23684780 (-)
atp6v1g1 atp6v1g1,LOC107709788,LOC107566902,LOC108259956 coding downstream 355123 23633681 ~ 23636168 (-)
slc31a1 slc31a1 coding downstream 358600 23623500 ~ 23632691 (-)
prpf4 prpf4,LOC107721635,LOC107691731,LOC107743802,LOC107663789 coding downstream 370131 23616176 ~ 23621160 (-)
mrm1 mrm1,LOC107695155,LOC107603181,LOC107730354 coding upstream 43430 24039706 ~ 24042737 (-)
fzd9a LOC107600608,LOC107728207,LOC107691792,LOC107695150,LOC107572577,LOC107730317 coding upstream 74003 24070279 ~ 24072863 (-)
fkbp6 fkbp6,LOC107695148,LOC107600609,LOC107691791,LOC107728208,LOC103911693,LOC107730305 coding upstream 86170 24082446 ~ 24086504 (-)
tmem150ab tmem150ab,LOC107684378,LOC107600579,LOC107572579,LOC107728219,LOC107691718 coding upstream 96104 24092380 ~ 24098174 (-)
ntrk2b ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341 coding upstream 169932 24166208 ~ 24187485 (-)
G39034 NA non-coding downstream 12764 23977176 ~ 23978527 (-)
G38982 NA non-coding downstream 88393 23902619 ~ 23902898 (-)
G38892 NA non-coding downstream 321422 23666841 ~ 23669869 (-)
G38769 NA non-coding downstream 633144 23357574 ~ 23358147 (-)
G38767 NA non-coding downstream 645494 23345589 ~ 23345797 (-)
G39050 NA non-coding upstream 72354 24068630 ~ 24069914 (-)
G39057 NA non-coding upstream 91604 24087880 ~ 24088812 (-)
G39059 NA non-coding upstream 105565 24101841 ~ 24107263 (-)
G39120 NA non-coding upstream 216166 24212442 ~ 24212759 (-)
G39121 NA non-coding upstream 218250 24214526 ~ 24215160 (-)
G38973 NA other downstream 103611 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 234703 23751880 ~ 23756588 (-)
LOC122345364 NA other downstream 385543 23602236 ~ 23605748 (-)
nrgna nrgna other downstream 859283 23127212 ~ 23132008 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 2107269 21877081 ~ 21884022 (-)
G39113 NA other upstream 201429 24197705 ~ 24200496 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other upstream 269188 24265464 ~ 24277304 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 591448 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 750396 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 757926 24754202 ~ 24758668 (-)

Expression


Co-expression Network