fdxacb1 (fdxacb1,si:dkey-71l1.3,LOC107745124,LOC107574693)


Basic Information

Item Value
gene id fdxacb1
gene name fdxacb1,si:dkey-71l1.3,LOC107745124,LOC107574693
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23519260 ~ 23523750 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239403.1
TGCTGGGTTGTTTACTCGGAATTTTCCGGAAATGTCCAGGACGCGCGAAGTGCTGCTTGTAGGGGAAGGCAACTTCTCTTTCTCGGCGGCTTTGAGCGAGAGCGCGGGCGAAGACGTCGGGGTGACCGCCACCTGCTTTCAAAGCGAGAACCAAACGTGCAGACAGGAGGGAGCTGTGCCGAACATACAGAGACTCCGCGACAGAGGATCAGTTGTTCTGTTTGAGGTGGACTGCACGTGCCTAAAGGAGCACGAAGCCATTCAGGATCATCTCTTTGACTGCGTTATCTTCAATTTCCCTCACTGTGGGCGTAAAAGTGGCGTAAAGAAGAACCGCGTCCTGTTGGTAAAATTTTTCCAAAATGCCGTTGCAGTCCTGAAGGACAATGGGGAAGTGCATGTCACCTTGTGTAATGGCCAAGGCGGCACTCCGTGTGACAGTCCAATGAGGGAATGGCACAATAGTTGGCAGGTGGTTGCCATGGCTGCAGAAGCAGGGCTAATTCTCAGTGAAATCCGTCCCTTTGACTGTGAAACGTATCAAGGTTACAGATGTACTGGTTACAGGAGCCAAGACAAAGGTTTCCATGTAGAGGGAGCTCTGACCCACATCTTCACTCGGAGTCTCCCGCACACCATGCCAGAGAAGCTTAAAATGGAGAAAACCATTGGGAAGGAGACGGTTTGTTTTGAGCTTCCGGCGGAGTTGAGTAATTATATCAACAGGGATTTCCTTGGTCAGCAGTCACATCATCCAGTGAAAACTGTCCAGGAGCAGTTACTTAGAGAGCTAAAGTCAATCTGGCCTGTGTGCTCTATGAATGAAGACTTCCCAGAACTGGTAAGCTGCCTCCCAGAAACGCCAGAGGCATGCGACTCCACTTTGACCCACTCCGAGGTCTATTGGATTAAACCTACTGACACCTTTATATTTGACCAAAGTGAAAACGAGCAAAACGACTGTGAGTCTATGGATGACCAGCAAAGCTTTACTGGCAGCTATGCACTTCGACCGTCCCTGTTGTTGCATGTCCAAGAGATCACCCAGAATGAAGACTTCAGTCCTGGCACTCTTCACGCGGTCAGCGGCCTGGTCTTTCAGAGACTGCCCATATCCCCGAGCCGCTCTCCTGCCTTTCACCAGCTTCTGCTGGTGGGGATGTTTCCTGCAGAATCCCATCCTGTCCAGTGCTTCCAAGATTGTTTGGAGTCACTGCTTGCTTCTTACGGTGTCTCCTTCGAGGAGGCACGAACGGGCCTGGAGCAGCAAGTGTGGATGAACTCAAAGACCCTTTCCAAGTTTGGGAGGATCACGTACCTGCCTTCCTTTTCCTCAGCCCTCGATGAAGGTTTACAGTTAATCGTGGTCTCAATCAACTTGGATCATTTAGCTACCCTGATTTTTGGCATTTCTGATTGGCGCTTACTGTGGAGCGCAGATGTTCGCTTTCTTAAGCATTTCGAGCTTAATCCCCTTGGACCTTTCAGTCCGTTCTCCCTTTACTCACCAAGCTACCTGCATGATATCAGTTTCTGGATGGAACCAGAAAGCTACGATGAGCTGGACTTCCATGCACTTGTGCGAGAAGCGTCTTGCGGCGCTGTTAAGGATTTGGCGTTAGTGGATCGCTTCAGACACCCACACATGGGTCACGCAAGCCTCTGCTATAGGCTGACCTATCAGTCGCCGGATCGGGCTCTGTCGCACAGCCAGGCGTTGGGTCTGCAGAATCAGCTGCGGAGACTGTTACCTCTGCGCCTGCAGGTCACCCTGAGGTGATTGACAGTCCATCGGatctcagatttacatttttaacgaTGAAGCATAACTTTATAGATCAAAAGAGAGTCTGTTTATTTTGACCGATTTGTTCtgcagtttttataaataaaagagagGTTAAATTTTAGAATGGGCGTAATTCCCGTTTATTTAAAACTGACATATCAGCTTATCTGAACTAAAgggatttttttgttgtcgtgTTTGAAATCCTGTCATGTTTACATATTGCTTGTTAtgctaattaattaatcattgtGGGTTTAATAAGACATCCAagaaatgtttacaaatttGAGTAGTACTGCGTTACCTTTCCTTGTTGTTGAGCACTTTTCAATGAGGGAACAAAATGAACATATTTCAAGCTGCATCCTCTCTTATGTGAAATTGATTATGCATGTTTAGGGATGTATTCAGTTCACTTAGAGATGTAATTATCAATGCACAACTGCAAATCATTTCATCCTATacgtttgttttttaaattaacaaatatttttctattttctttgttggcaaagtgtgtgtttacattatCTCTGAAGCTGCATTTGATACTGTGATATTTCTGCAATGTCTATGATGAGGTTTGTGATCATGACTGCAACTTGTTAAATTGCTATATGTTATTTATGCTATATATGCTGTTTGTTACCTTAAATAACATGCTGTATGCTGAATGGAATTTAAGTGGAATTATGAAAATATGCAACACAGATTATCCATTGTGTTGGTTGGGATGCTTAAACTGCTGTTACAAGCTGCTGAATGAACATATCATTCCTGGTCCTCTACGAACCTGACTGGTTtgaattacatatatatatatgttttattccCTTTacaaatcattataattatgaaacgtatttaaaaacaaatgcacaccAGGGTAATACGAgtacaaatgaaaatgtaacatgCGTTAACCacacattctgtcattaaataaaattttg

Function

symbol description
fdxacb1 Predicted to enable rRNA (uridine-N3-)-methyltransferase activity. Predicted to be involved in rRNA base methylation. Predicted to be active in cytoplasm. Orthologous to human FDXACB1 (ferredoxin-fold anticodon binding domain containing 1).

NR:

description
ferredoxin-fold anticodon-binding domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239403.1 True 2745 mRNA 0.44 5 23519260 23523750

Neighbor

gene id symbol gene type direction distance location
alg9 alg9,LOC107691744,LOC107745128 coding downstream 1112 23510178 ~ 23518148 (-)
ppp2r1ba ppp2r1a,LOC107663771,LOC107691746,LOC107745127,LOC107603174,LOC108428700,LOC103032850 coding downstream 13517 23495138 ~ 23505743 (-)
btg4 btg4,LOC107745130,LOC107691802,LOC107600778,LOC107709986 coding downstream 71122 23446697 ~ 23448138 (-)
LOC122345314 fer,LOC107709787,LOC107691727,LOC107721649,LOC107663784,LOC107564044,LOC107603170 coding downstream 108108 23394164 ~ 23411152 (-)
hepacamb LOC107712936,LOC107556427,LOC107744315,LOC107691804,LOC107664307,LOC107600797 coding downstream 400116 23105929 ~ 23119144 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203,LOC107663780 coding upstream 2828 23526578 ~ 23528254 (-)
bicdl2 zgc:153929,LOC107574699,LOC107743809,LOC107691738,LOC107663774,LOC107603196 coding upstream 24965 23548715 ~ 23554487 (-)
cryabb cryab,LOC107574702,LOC107603201,LOC107663778,LOC107691740,LOC107721632 coding upstream 35604 23559354 ~ 23562751 (-)
prpf4 prpf4,LOC107721635,LOC107691731,LOC107743802,LOC107663789 coding upstream 92426 23616176 ~ 23621160 (-)
slc31a1 slc31a1 coding upstream 99750 23623500 ~ 23632691 (-)
G38769 NA non-coding downstream 161113 23357574 ~ 23358147 (-)
G38767 NA non-coding downstream 173463 23345589 ~ 23345797 (-)
G38747 NA non-coding downstream 481790 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 642823 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 726207 22791690 ~ 22793053 (-)
G38892 NA non-coding upstream 143091 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 378869 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 453426 23977176 ~ 23978527 (-)
G39050 NA non-coding upstream 544880 24068630 ~ 24069914 (-)
G39057 NA non-coding upstream 564130 24087880 ~ 24088812 (-)
nrgna nrgna other downstream 387252 23127212 ~ 23132008 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1635238 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1693155 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 1899677 21612688 ~ 21619583 (-)
G38359 NA other downstream 2150212 21364238 ~ 21369048 (-)
LOC122345364 NA other upstream 78486 23602236 ~ 23605748 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 228130 23751880 ~ 23756588 (-)
G38973 NA other upstream 363553 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 455914 23979664 ~ 23997739 (-)
G39113 NA other upstream 673955 24197705 ~ 24200496 (-)

Expression


Co-expression Network