mrm1 (mrm1,LOC107695155,LOC107603181,LOC107730354)


Basic Information

Item Value
gene id mrm1
gene name mrm1,LOC107695155,LOC107603181,LOC107730354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24039706 ~ 24042737 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239404.1
TCGGGCTTTGACGCGGTACCTCAGAGCGGAAGTGATGCCGTCGAACCGAAAGCTGTCCcacgtgtttttgtttgttgttgaaaAACGAATATAATGAAGTGGAGTAGATATACCTGAGGTCGGTTTTATTTGATATCGCATTTTACGCTGCTAATGTTGAAAATTCTGCCTTATTTAATGAGCATAAAGTGATGCCGGTGCTTTGATTCTGAAGGGCATCGTATCCTGTTGGTTAGCAGCAGCTActgtttcattaataattagatttttaataaataaataaataatctgttaAAAGCCACATAAATTGTCGATATGAACCATGTAACTAGATTTTTTAGGCCAGCAAAAACCGACAAACCgtcttaaaatgatttaaggTTCTGATTTTTATTGGGGGATATATGAGCAagttattaaaagcaaatatgCAGGCATGGAAAACAAGTATCCAAATACTCCTAGCGTCCAATCGAACTGGGATTAGATGTTGCTCAGCAGGGCTGAAGGACTTGCATTTCACACAACGTGAAGCCTATAGCTGCACAAGAGCGCTGTTTTGTCCGAGAGACAGTGTTTCGAAGTCAGGGGAGAGATTTAACCCTAGCAAACTCAAAAAGCAGTCCAAGCAGCATAAATACGCCTCTGCCAGAGAGGACCTTTCCAGATCGGCAAAGACGCAGAAGGGAAAATTGTCATCAGAGCTTCAGAAACTGAGGTTCGAGGATTTCAGCGAGTCAGAAAGAGGACGGGCTCTGAGGCATGCCGGAAAAGAATCGGAGTTAAACGAAGATGAACACTTGGAGATCGTGTTCGGCGTGGCCCCGTGTCTGCTGGCCCTCACGCAGAACCGGAGGAGGCCGAGTCGTCTGTTCGTGAAGAGCGGGGACGGGCCGCAGAGAGACACGCTCTTGAGGGTCTGTCAGGAGGCCCTCAGGCGGGGGGTGCAGGTACAGAGGGTCAGTAAGCCAACACTGGATAAGATGTGTGGTGGGAAGGTGCACCAGGGGTTGTGTCTGCAGGCCAGTCCTCTTGAGTTCGCCACCGAGGAAAAACCAGCGAGATCTCCAGAGGTGAAGAATCACCGGGCATTATGGCTGGTTTTGGACGGAGTGCAGGATCCAATGAATCTCGGTGCCATTTTGAGGTCTGCATATTTCCTGGGAGTGGATCGAATTGCCAGCAGCATCCATGACAGCTGTCCTCTGACGCCCACAGTGAGTAAAGCCAGTGCAGGTGTGATGGAGGTCACCCAGGTGTTTGGATACAGCAGCTTGAAAGATATGATTAAGGTGAAAGCAGAAGAAGGTTGGCAAGTAGTTGGTACTGTTGGGTTAGAAGAAAGCAGTCCTAAGTCCACAGTTCTGCCATGTTCAGATTTCAAGATGTCCAGACATACACTACTGTTAATGGgTGGAGAAGGTGACGGTCTTTCTCCAGAACTGCGTCAGATGTGTGACGTCCTGCTCACCATCCCTCCACGCAGAAACCTGCACCCTGGGGTAGAATCTCTCAATGTGTCTGTAGCCACAGGCATTCTGCTGCACTCTCTTCTGTCCACACGCACAGGaagctgatgatgatgatgatgatggcatCAACGACAAGGCAGCAGCATTATTTACTCAGACGTCTCTCATTAGCCCCCTACAGTGATTAATGACTGGATTACTTCATCAATTAACAGTCTGAGTGTCTGGAGAAGCTCATTGATCAGATAAAGAGAGGCTGGAGATTCATTCCGGACCAGTTACTGACTATGACCACCTTGTTTAAGACAAGACCTCACTACACGGGGTCACCGGCGGGAAACTGAATTTTATAAACAGAGGCGTAacgttttaattattaattttcttcatGAAGGAGATTAGTTCACGTGCTTTATTAACTACAAGCTACATGGACTGATGAGAAGCTACGCTAAATATAGATGATGTTCATATATTTGAAACAGCATGGATTAAACGGTACAATACAAACAAA

Function

symbol description
mrm1 Predicted to enable RNA binding activity and RNA methyltransferase activity. Predicted to act upstream of or within RNA processing. Predicted to be active in mitochondrion. Orthologous to human MRM1 (mitochondrial rRNA methyltransferase 1).

NR:

description
rRNA methyltransferase 1, mitochondrial isoform X2

GO: NA

KEGG:

id description
K15507 MRM1, PET56; 21S rRNA (GM2251-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239404.1 True 1986 mRNA 0.46 5 24039706 24042737

Neighbor

gene id symbol gene type direction distance location
lhx1b lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180 coding downstream 43430 23991291 ~ 23996276 (-)
tmem232 LOC107691726,LOC107751260 coding downstream 299310 23733743 ~ 23740396 (-)
pja2 LOC107691728,LOC107721647,LOC107709785,LOC107663782,LOC107603188,LOC107564050 coding downstream 354926 23671287 ~ 23684780 (-)
atp6v1g1 atp6v1g1,LOC107709788,LOC107566902,LOC108259956 coding downstream 403538 23633681 ~ 23636168 (-)
slc31a1 slc31a1 coding downstream 407015 23623500 ~ 23632691 (-)
fzd9a LOC107600608,LOC107728207,LOC107691792,LOC107695150,LOC107572577,LOC107730317 coding upstream 27542 24070279 ~ 24072863 (-)
fkbp6 fkbp6,LOC107695148,LOC107600609,LOC107691791,LOC107728208,LOC103911693,LOC107730305 coding upstream 39709 24082446 ~ 24086504 (-)
tmem150ab tmem150ab,LOC107684378,LOC107600579,LOC107572579,LOC107728219,LOC107691718 coding upstream 49643 24092380 ~ 24098174 (-)
ntrk2b ntrk2b,LOC107691713,LOC107728215,LOC107600581,LOC107730333,LOC107596017,LOC108443857,LOC103044160,LOC108259739,LOC107684341 coding upstream 123471 24166208 ~ 24187485 (-)
pcsk5a pcsk5a,LOC107728213,LOC107691788,LOC107684380,LOC107730328,LOC107596014,LOC107600598 coding upstream 187609 24230346 ~ 24252631 (-)
G39034 NA non-coding downstream 61179 23977176 ~ 23978527 (-)
G38982 NA non-coding downstream 136808 23902619 ~ 23902898 (-)
G38892 NA non-coding downstream 369837 23666841 ~ 23669869 (-)
G38769 NA non-coding downstream 681559 23357574 ~ 23358147 (-)
G38767 NA non-coding downstream 693909 23345589 ~ 23345797 (-)
G39050 NA non-coding upstream 25893 24068630 ~ 24069914 (-)
G39057 NA non-coding upstream 45143 24087880 ~ 24088812 (-)
G39059 NA non-coding upstream 59104 24101841 ~ 24107263 (-)
G39120 NA non-coding upstream 169705 24212442 ~ 24212759 (-)
G39121 NA non-coding upstream 171789 24214526 ~ 24215160 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other downstream 41967 23979664 ~ 23997739 (-)
G38973 NA other downstream 152026 23887303 ~ 23887680 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other downstream 283118 23751880 ~ 23756588 (-)
LOC122345364 NA other downstream 433958 23602236 ~ 23605748 (-)
nrgna nrgna other downstream 907698 23127212 ~ 23132008 (-)
G39113 NA other upstream 154968 24197705 ~ 24200496 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other upstream 222727 24265464 ~ 24277304 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other upstream 544987 24587724 ~ 24594116 (-)
naa38 naa38 other upstream 703935 24746672 ~ 24748610 (-)
LOC122345923 NA other upstream 711465 24754202 ~ 24758668 (-)

Expression


Co-expression Network