slc31a1 (slc31a1)


Basic Information

Item Value
gene id slc31a1
gene name slc31a1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 23623500 ~ 23632691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239441.1
TTTCGCGTTGCCTCTGACTTCACGCTGTAGGAGCATCTCGCCGCTGGTCAGAGGAAAGattgtgttcatttattctTGTCCCAAAACTGACGATTTGCAGTTAATATCAGAAACACCGAAGCACCAGGTGGACGCATTCGTCGCGTGCTGTCAAGCACCTCTGTGAAGTGAGATAAAGATGTCAGATCCACACAGTCACCACATGCACCCAACCGTGCAGTCTGCCGTCTCAGACCCTCACGGGGACCATATGACGTCCCCCGACGCAGGCCATGGGGAtcacatgatgatgatgatgCAAATGACCTTCTACTTCGGCTGCAAAAACGTGGAGCTGTTATTCGCTGGGCTGGTCATCAACACACCAGGAGAAATGGTAGGCGCATGCATTGGTGTGTTCTTGCTGGCTGTGTTCTACGAGGGCCTGAAGATCGGCCGCGAGGTCCTGCTCAGGAGGAATCAGGTGAACGTGCGTTACAACTCCATGCCTGTCCCAGGAGCTGATGGCACCGTGCTCATGGAGACGCATAAAACAGTCGGCCAGCGGATGATGAGTCTGGCGCACTTCTTACAGACGTTCCTTCACATCATCCAAGTGGTGGTCAGTTACTTCCTCATGCTGGTGTTCATGACGTACAACGGCTACCTGTGCATCGCAGTGGCGGCGGGCGCCGGCTTCGGCTACTTCCTGTTCAGCTGGAAGAAGGCAGTAGTGGTGGATATTACTGAACACTGTCATTAACTTCTCCCGTGTATAACCTCGAAAAACCACCACTTCACGATCCCAACGTGCACCGCAACTCTATATGTGCTGGGCACGATATGATTTTTGTAAATCTCTGTTaatttttaaccttttattttgaatcaaattagCCCCGTATTTCATATCTCAACAACCGTTCATCATCAACATCACAGCCTATCAGTCTACCTCCATAGTACTGACATTATTTGTAACTTCTCGCAAATTATTAAGGTTATGATGGTGCGAAAGAGCCTTACTAAACCTTTTGCCTTAAATGAGGGAACGCACGCATACCCCCCAAGAGGGCGACTGTAGACTCTAAAAGCCCAACTGGATCTGGTGGACCCAATATACAAGCACTAGCGGTGGGAGGgtggttttttttggttggttttCTTTGAGGTTGTTATGGCCAAGTGTTTCAAATCGCTGAAACGACCGTTAATAATCAGTGACCATTGTTTAGACATAAACACTGGACTGAATGATGTTTGCACAAGAAAGAGAGCTTTTGGGACTCTTGAGTTTGCAGAGTTTCAAGTCGAACTTTGCTCCCTTTGGAGTGCTTTTAAGTAAATACAGGGGGGAAAAGTGgaatataaattatatctgATGCCAGTGTCACCGACttagttttataatttatatttgtaacacTCAACTGTACTTGTTATCAGTCTTTTCTGGCAATCTTTATGTGGATCCTTTTACgttatgacatttttaaatccaAAAACTGTGGCGCATTTGTGATGTTGAGCGAATCGTGagctgttaaaaacattaagGTCATCGCTCTGATAGTTACTGGGTCTCGGTAATGTGAATTTTACGCGGAAAATGAAGATAATTATGCTCCTTAATTAAAAGGAGTGTGCCTTTTACATACAGGACCCAATAAAAGTGCCCAAAGAGTGTCTCAACTGCTTTCAAACACAAAGCTTTCTTAACGAGAAAACCACATTTTAAACGTGTGGGTTTTGGAAGAAAGCCcgttttttgttcctttttaattttttttttttttgctgaaaaactCTTCACGTCATGTTTTTGTAGCAGCTGTCACTTTGTAGAATTGGATCTGAGGTTCTGTTCTTCATCACGGTGGGCATTCATACCGctgatttctttcaaaagcaaaGGTTTGCTTCGTCTTAACTACAACTGTAGACCGAACCTCATTTCCAGTGCTGTGGCAATCTTAAGATTTCTTAGTCTGTTTACAGTCCAGTCAAGTCTGTAGAGTAATGTACTGTAATCATAAggaaaatgaagaataaatatTGTACGACTTCAAAGATA
>XM_043239442.1
AAGCAGATGAGAGGTCACATGAGACGGCGAGCCTCGCGCTACACGTCCCTCTCTAACCTCACCTGTTCACCCGGGAGATACTGCGAGAAGAATCCCTGACAGGAACTACTTGTACGGTTTTGCAGTGCTGAACAGAAAGAAGCTGAGAGAGGTGACACGTTTAGCTTGGCACCTCTGTGAAGTGAGATAAAGATGTCAGATCCACACAGTCACCACATGCACCCAACCGTGCAGTCTGCCGTCTCAGACCCTCACGGGGACCATATGACGTCCCCCGACGCAGGCCATGGGGAtcacatgatgatgatgatgCAAATGACCTTCTACTTCGGCTGCAAAAACGTGGAGCTGTTATTCGCTGGGCTGGTCATCAACACACCAGGAGAAATGGTAGGCGCATGCATTGGTGTGTTCTTGCTGGCTGTGTTCTACGAGGGCCTGAAGATCGGCCGCGAGGTCCTGCTCAGGAGGAATCAGGTGAACGTGCGTTACAACTCCATGCCTGTCCCAGGAGCTGATGGCACCGTGCTCATGGAGACGCATAAAACAGTCGGCCAGCGGATGATGAGTCTGGCGCACTTCTTACAGACGTTCCTTCACATCATCCAAGTGGTGGTCAGTTACTTCCTCATGCTGGTGTTCATGACGTACAACGGCTACCTGTGCATCGCAGTGGCGGCGGGCGCCGGCTTCGGCTACTTCCTGTTCAGCTGGAAGAAGGCAGTAGTGGTGGATATTACTGAACACTGTCATTAACTTCTCCCGTGTATAACCTCGAAAAACCACCACTTCACGATCCCAACGTGCACCGCAACTCTATATGTGCTGGGCACGATATGATTTTTGTAAATCTCTGTTaatttttaaccttttattttgaatcaaattagCCCCGTATTTCATATCTCAACAACCGTTCATCATCAACATCACAGCCTATCAGTCTACCTCCATAGTACTGACATTATTTGTAACTTCTCGCAAATTATTAAGGTTATGATGGTGCGAAAGAGCCTTACTAAACCTTTTGCCTTAAATGAGGGAACGCACGCATACCCCCCAAGAGGGCGACTGTAGACTCTAAAAGCCCAACTGGATCTGGTGGACCCAATATACAAGCACTAGCGGTGGGAGGgtggttttttttggttggttttCTTTGAGGTTGTTATGGCCAAGTGTTTCAAATCGCTGAAACGACCGTTAATAATCAGTGACCATTGTTTAGACATAAACACTGGACTGAATGATGTTTGCACAAGAAAGAGAGCTTTTGGGACTCTTGAGTTTGCAGAGTTTCAAGTCGAACTTTGCTCCCTTTGGAGTGCTTTTAAGTAAATACAGGGGGGAAAAGTGgaatataaattatatctgATGCCAGTGTCACCGACttagttttataatttatatttgtaacacTCAACTGTACTTGTTATCAGTCTTTTCTGGCAATCTTTATGTGGATCCTTTTACgttatgacatttttaaatccaAAAACTGTGGCGCATTTGTGATGTTGAGCGAATCGTGagctgttaaaaacattaagGTCATCGCTCTGATAGTTACTGGGTCTCGGTAATGTGAATTTTACGCGGAAAATGAAGATAATTATGCTCCTTAATTAAAAGGAGTGTGCCTTTTACATACAGGACCCAATAAAAGTGCCCAAAGAGTGTCTCAACTGCTTTCAAACACAAAGCTTTCTTAACGAGAAAACCACATTTTAAACGTGTGGGTTTTGGAAGAAAGCCcgttttttgttcctttttaattttttttttttttgctgaaaaactCTTCACGTCATGTTTTTGTAGCAGCTGTCACTTTGTAGAATTGGATCTGAGGTTCTGTTCTTCATCACGGTGGGCATTCATACCGctgatttctttcaaaagcaaaGGTTTGCTTCGTCTTAACTACAACTGTAGACCGAACCTCATTTCCAGTGCTGTGGCAATCTTAAGATTTCTTAGTCTGTTTACAGTCCAGTCAAGTCTGTAGAGTAATGTACTGTAATCATAAggaaaatgaagaataaatatTGTACGACTTCAAAGATA
>XM_043239443.1
GTTGCCTCTGACTTCACGCTGTAGGAGCATCTCGCCGCTGGTCAGAGGAAAGattgtgttcatttattctTGTCCCAAAACTGACGATTTGCAGTTAATATCAGAAACACCGAAGCACCAGGTGGACGCATTCGTCGCGTGCTGTCAAGAAAGCAGCATTATGCGAAACATAAAGTAAATCCAGAGGCGGGTTATGATCAgCACCTCTGTGAAGTGAGATAAAGATGTCAGATCCACACAGTCACCACATGCACCCAACCGTGCAGTCTGCCGTCTCAGACCCTCACGGGGACCATATGACGTCCCCCGACGCAGGCCATGGGGAtcacatgatgatgatgatgCAAATGACCTTCTACTTCGGCTGCAAAAACGTGGAGCTGTTATTCGCTGGGCTGGTCATCAACACACCAGGAGAAATGGTAGGCGCATGCATTGGTGTGTTCTTGCTGGCTGTGTTCTACGAGGGCCTGAAGATCGGCCGCGAGGTCCTGCTCAGGAGGAATCAGGTGAACGTGCGTTACAACTCCATGCCTGTCCCAGGAGCTGATGGCACCGTGCTCATGGAGACGCATAAAACAGTCGGCCAGCGGATGATGAGTCTGGCGCACTTCTTACAGACGTTCCTTCACATCATCCAAGTGGTGGTCAGTTACTTCCTCATGCTGGTGTTCATGACGTACAACGGCTACCTGTGCATCGCAGTGGCGGCGGGCGCCGGCTTCGGCTACTTCCTGTTCAGCTGGAAGAAGGCAGTAGTGGTGGATATTACTGAACACTGTCATTAACTTCTCCCGTGTATAACCTCGAAAAACCACCACTTCACGATCCCAACGTGCACCGCAACTCTATATGTGCTGGGCACGATATGATTTTTGTAAATCTCTGTTaatttttaaccttttattttgaatcaaattagCCCCGTATTTCATATCTCAACAACCGTTCATCATCAACATCACAGCCTATCAGTCTACCTCCATAGTACTGACATTATTTGTAACTTCTCGCAAATTATTAAGGTTATGATGGTGCGAAAGAGCCTTACTAAACCTTTTGCCTTAAATGAGGGAACGCACGCATACCCCCCAAGAGGGCGACTGTAGACTCTAAAAGCCCAACTGGATCTGGTGGACCCAATATACAAGCACTAGCGGTGGGAGGgtggttttttttggttggttttCTTTGAGGTTGTTATGGCCAAGTGTTTCAAATCGCTGAAACGACCGTTAATAATCAGTGACCATTGTTTAGACATAAACACTGGACTGAATGATGTTTGCACAAGAAAGAGAGCTTTTGGGACTCTTGAGTTTGCAGAGTTTCAAGTCGAACTTTGCTCCCTTTGGAGTGCTTTTAAGTAAATACAGGGGGGAAAAGTGgaatataaattatatctgATGCCAGTGTCACCGACttagttttataatttatatttgtaacacTCAACTGTACTTGTTATCAGTCTTTTCTGGCAATCTTTATGTGGATCCTTTTACgttatgacatttttaaatccaAAAACTGTGGCGCATTTGTGATGTTGAGCGAATCGTGagctgttaaaaacattaagGTCATCGCTCTGATAGTTACTGGGTCTCGGTAATGTGAATTTTACGCGGAAAATGAAGATAATTATGCTCCTTAATTAAAAGGAGTGTGCCTTTTACATACAGGACCCAATAAAAGTGCCCAAAGAGTGTCTCAACTGCTTTCAAACACAAAGCTTTCTTAACGAGAAAACCACATTTTAAACGTGTGGGTTTTGGAAGAAAGCCcgttttttgttcctttttaattttttttttttttgctgaaaaactCTTCACGTCATGTTTTTGTAGCAGCTGTCACTTTGTAGAATTGGATCTGAGGTTCTGTTCTTCATCACGGTGGGCATTCATACCGctgatttctttcaaaagcaaaGGTTTGCTTCGTCTTAACTACAACTGTAGACCGAACCTCATTTCCAGTGCTGTGGCAATCTTAAGATTTCTTAGTCTGTTTACAGTCCAGTCAAGTCTGTAGAGTAATGTACTGTAATCATAAggaaaatgaagaataaatatTGTACGACTTCAAAGATA
>XM_043239444.1
TAACGATCGAGACATAAACAAGCACCTCTGTGAAGTGAGATAAAGATGTCAGATCCACACAGTCACCACATGCACCCAACCGTGCAGTCTGCCGTCTCAGACCCTCACGGGGACCATATGACGTCCCCCGACGCAGGCCATGGGGAtcacatgatgatgatgatgCAAATGACCTTCTACTTCGGCTGCAAAAACGTGGAGCTGTTATTCGCTGGGCTGGTCATCAACACACCAGGAGAAATGGTAGGCGCATGCATTGGTGTGTTCTTGCTGGCTGTGTTCTACGAGGGCCTGAAGATCGGCCGCGAGGTCCTGCTCAGGAGGAATCAGGTGAACGTGCGTTACAACTCCATGCCTGTCCCAGGAGCTGATGGCACCGTGCTCATGGAGACGCATAAAACAGTCGGCCAGCGGATGATGAGTCTGGCGCACTTCTTACAGACGTTCCTTCACATCATCCAAGTGGTGGTCAGTTACTTCCTCATGCTGGTGTTCATGACGTACAACGGCTACCTGTGCATCGCAGTGGCGGCGGGCGCCGGCTTCGGCTACTTCCTGTTCAGCTGGAAGAAGGCAGTAGTGGTGGATATTACTGAACACTGTCATTAACTTCTCCCGTGTATAACCTCGAAAAACCACCACTTCACGATCCCAACGTGCACCGCAACTCTATATGTGCTGGGCACGATATGATTTTTGTAAATCTCTGTTaatttttaaccttttattttgaatcaaattagCCCCGTATTTCATATCTCAACAACCGTTCATCATCAACATCACAGCCTATCAGTCTACCTCCATAGTACTGACATTATTTGTAACTTCTCGCAAATTATTAAGGTTATGATGGTGCGAAAGAGCCTTACTAAACCTTTTGCCTTAAATGAGGGAACGCACGCATACCCCCCAAGAGGGCGACTGTAGACTCTAAAAGCCCAACTGGATCTGGTGGACCCAATATACAAGCACTAGCGGTGGGAGGgtggttttttttggttggttttCTTTGAGGTTGTTATGGCCAAGTGTTTCAAATCGCTGAAACGACCGTTAATAATCAGTGACCATTGTTTAGACATAAACACTGGACTGAATGATGTTTGCACAAGAAAGAGAGCTTTTGGGACTCTTGAGTTTGCAGAGTTTCAAGTCGAACTTTGCTCCCTTTGGAGTGCTTTTAAGTAAATACAGGGGGGAAAAGTGgaatataaattatatctgATGCCAGTGTCACCGACttagttttataatttatatttgtaacacTCAACTGTACTTGTTATCAGTCTTTTCTGGCAATCTTTATGTGGATCCTTTTACgttatgacatttttaaatccaAAAACTGTGGCGCATTTGTGATGTTGAGCGAATCGTGagctgttaaaaacattaagGTCATCGCTCTGATAGTTACTGGGTCTCGGTAATGTGAATTTTACGCGGAAAATGAAGATAATTATGCTCCTTAATTAAAAGGAGTGTGCCTTTTACATACAGGACCCAATAAAAGTGCCCAAAGAGTGTCTCAACTGCTTTCAAACACAAAGCTTTCTTAACGAGAAAACCACATTTTAAACGTGTGGGTTTTGGAAGAAAGCCcgttttttgttcctttttaattttttttttttttgctgaaaaactCTTCACGTCATGTTTTTGTAGCAGCTGTCACTTTGTAGAATTGGATCTGAGGTTCTGTTCTTCATCACGGTGGGCATTCATACCGctgatttctttcaaaagcaaaGGTTTGCTTCGTCTTAACTACAACTGTAGACCGAACCTCATTTCCAGTGCTGTGGCAATCTTAAGATTTCTTAGTCTGTTTACAGTCCAGTCAAGTCTGTAGAGTAATGTACTGTAATCATAAggaaaatgaagaataaatatTGTACGACTTCAAAGATA

Function

symbol description
slc31a1 Predicted to enable copper ion transmembrane transporter activity. Acts upstream of or within cellular response to estrogen stimulus; hypotonic salinity response; and response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in gill; gut; liver; locus coeruleus; and yolk syncytial layer. Orthologous to human SLC31A1 (solute carrier family 31 member 1).

NR:

description
high affinity copper uptake protein 1 isoform X1

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0046688 response to copper ion biological_process
GO:0035434 copper ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG:

id description
K14686 SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239441.1 False 2053 mRNA 0.44 5 23623500 23632691
XM_043239442.1 False 2067 mRNA 0.44 5 23623500 23629071
XM_043239443.1 True 2099 mRNA 0.44 6 23623500 23632685
XM_043239444.1 False 1920 mRNA 0.43 5 23623500 23629927

Neighbor

gene id symbol gene type direction distance location
prpf4 prpf4,LOC107721635,LOC107691731,LOC107743802,LOC107663789 coding downstream 2340 23616176 ~ 23621160 (-)
cryabb cryab,LOC107574702,LOC107603201,LOC107663778,LOC107691740,LOC107721632 coding downstream 60749 23559354 ~ 23562751 (-)
bicdl2 zgc:153929,LOC107574699,LOC107743809,LOC107691738,LOC107663774,LOC107603196 coding downstream 69013 23548715 ~ 23554487 (-)
ufc1 ufc1,LOC107574697,LOC107691797,LOC107603203,LOC107663780 coding downstream 95246 23526578 ~ 23528254 (-)
fdxacb1 fdxacb1,si:dkey-71l1.3,LOC107745124,LOC107574693 coding downstream 99750 23519260 ~ 23523750 (-)
atp6v1g1 atp6v1g1,LOC107709788,LOC107566902,LOC108259956 coding upstream 990 23633681 ~ 23636168 (-)
pja2 LOC107691728,LOC107721647,LOC107709785,LOC107663782,LOC107603188,LOC107564050 coding upstream 38596 23671287 ~ 23684780 (-)
tmem232 LOC107691726,LOC107751260 coding upstream 101052 23733743 ~ 23740396 (-)
lhx1b lhx1b,lhx1,LOC107728209,LOC107691793,LOC107600607,LOC107695154,LOC107730325,LOC107603180 coding upstream 358600 23991291 ~ 23996276 (-)
mrm1 mrm1,LOC107695155,LOC107603181,LOC107730354 coding upstream 407015 24039706 ~ 24042737 (-)
G38769 NA non-coding downstream 265353 23357574 ~ 23358147 (-)
G38767 NA non-coding downstream 277703 23345589 ~ 23345797 (-)
G38747 NA non-coding downstream 586030 23036457 ~ 23037470 (-)
G38658 nup88,LOC107691763,LOC107709758,LOC107600765,LOC107744326,LOC107664301 non-coding downstream 747063 22873971 ~ 22876437 (-)
G38634 NA non-coding downstream 830447 22791690 ~ 22793053 (-)
G38892 NA non-coding upstream 34150 23666841 ~ 23669869 (-)
G38982 NA non-coding upstream 269928 23902619 ~ 23902898 (-)
G39034 NA non-coding upstream 344485 23977176 ~ 23978527 (-)
G39050 NA non-coding upstream 435939 24068630 ~ 24069914 (-)
G39057 NA non-coding upstream 455189 24087880 ~ 24088812 (-)
LOC122345364 NA other downstream 17752 23602236 ~ 23605748 (-)
nrgna nrgna other downstream 491492 23127212 ~ 23132008 (-)
LOC122344823 LOC107717639,LOC107712133,LOC107685828,LOC107710712,LOC107681889,LOC107575606,LOC107587718 other downstream 1739478 21877081 ~ 21884022 (-)
akap10 akap10,LOC107595480,LOC107587677 other downstream 1797395 21809013 ~ 21826105 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other downstream 2003917 21612688 ~ 21619583 (-)
G38917 LOC107691721,LOC107751254,LOC107564048,LOC107721650,LOC107603186,LOC107663788 other upstream 119189 23751880 ~ 23756588 (-)
G38973 NA other upstream 254612 23887303 ~ 23887680 (-)
aatf LOC107695156,LOC107730321,LOC107600606,LOC107603183 other upstream 346973 23979664 ~ 23997739 (-)
G39113 NA other upstream 565014 24197705 ~ 24200496 (-)
tmc2a tmc2a,tmc1,LOC107684381,LOC107596032,LOC108437175,LOC107730318,LOC108259782 other upstream 632773 24265464 ~ 24277304 (-)

Expression


Co-expression Network