hspb3 (hspb3,LOC107746796,LOC107599178,LOC107744878,LOC107602000)


Basic Information

Item Value
gene id hspb3
gene name hspb3,LOC107746796,LOC107599178,LOC107744878,LOC107602000
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14918926 ~ 14919939 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239467.1
ACTGGCATTGCACTACTCCACATTCACTACACAAAAAGCGAATGAAAAGGGAACCTCTGCACCCGGTGTCATGGCAGGAGAGGGGATCACTATTTCCCACGGAATAGCAAGCCCAGGGCGCTACCAGGACCACTTCAAAACCCGGAATCTCACTGAATGCACTGAAGATCACCGACTGTTTGCCCTGCCAGGACCTGAATGTTTGCCGGTTAAAATGGACACTGAGGGGGGTCGAGCAGACAGCGAGGACGAGGATTCAGGAGAGCCACTATTTCAAGTACTGCTGGATGTGACTCAGTTTAAACCAGACGACATCCTCATACAGGTCTTTGAAGGGTGGCTGCTTATTAGAGGTCGGCATGGGGTGAGGATGGACGAGCATGGCTTTGTGTCACGAAGTTTCACCAGACAGTATCAGCTGCCTGACCGTCAGCTCCAGGCAGGGGACCTCAAAGCCATGCTGTGTCATGACGGGATTCTAGTGGTGGAGACCAAGGACCGATGGTGGCCAGCATGTGATTAGGAAAACACAGTGACTTAACACCATTCGTCGTGTTAGTTGAACAGTGTTGTTGTGATCAGTTAGCCGGTAAAGCTATCACATTCTTTGCTGGTGAATgacaattcattcattcattcaattttGCTTGATTTTGGGTGCCCCCAGTTGTTCAACAATAAGCTTGATTGGCTGCATAATGCATAGtgggacaaaaaataaatgactcatATCTGTTCATATTTCTATAGATAACCTAAAATAagtcattaaaaataagcatcaAGTGCAACAGTTTCCTTAAAGgagtgtaattaaaatgtacgaTTACATCTCATTATGTCATTCTGCAAGCACGTTTATCAGCATGCCAATACTATAATTCAGCGCTACTGTATATTTAGGAATTGTTTGACAAACCTGTTTAGCACAAAAAGTAAACATGCCGGCCGGCATGACCTCATAATACTGGTAAAAACAGAAACCTATTCTTTGAGTAAAGAAGTTTTAACGTT

Function

symbol description
hspb3 Predicted to be active in cytoplasm and nuclear speck. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 2C. Orthologous to human HSPB3 (heat shock protein family B (small) member 3).

NR:

description
heat shock protein beta-3

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K09544 HSPB3; heat shock protein beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239467.1 True 1014 mRNA 0.44 1 14918926 14919939

Neighbor

gene id symbol gene type direction distance location
snx18a snx18,snx18a,LOC107599175,LOC107661231,LOC107746794,LOC107744868,LOC107602026 coding downstream 1162 14906584 ~ 14917764 (-)
si:dkey-193c22.1 si:dkey-193c22.1,LOC107661268,LOC107602027,LOC107599182,LOC107744872,LOC107746871,LOC107736603 coding downstream 38853 14876022 ~ 14880073 (-)
wdfy3 wdfy3,LOC107681281 coding downstream 43449 14812557 ~ 14875477 (-)
cds1 cds1,LOC107602031,LOC107663388,LOC107744867 coding downstream 108681 14795349 ~ 14810245 (-)
rasgef1ba rasgef1ba,rasgef1b,LOC107599189,LOC107663389,LOC107744864,LOC107746854 coding downstream 140667 14718524 ~ 14778259 (-)
fsta fst,fsta,LOC107746798,LOC107599173,LOC107708632,LOC107602023,LOC107661233 coding upstream 96960 15016899 ~ 15023456 (-)
isl1a isl1,LOC107661270,LOC107708623,LOC107599171,LOC107602011 coding upstream 202057 15121996 ~ 15128172 (-)
parp8 parp8,LOC107746800,LOC107661236,LOC107708633 coding upstream 254449 15174388 ~ 15199837 (-)
golph3a golph3,LOC107681169,LOC107552603,LOC107746803,LOC107602021 coding upstream 348737 15268676 ~ 15279272 (-)
mtmr12 mtmr12,LOC107746804,LOC107552602,LOC107708634,LOC107602020 coding upstream 360275 15280214 ~ 15292882 (-)
G36714 NA non-coding downstream 13305 14905385 ~ 14905621 (-)
G36708 NA non-coding downstream 37861 14880865 ~ 14881065 (-)
G36696 NA non-coding downstream 219973 14698736 ~ 14698953 (-)
G36631 NA non-coding downstream 266533 14652095 ~ 14652393 (-)
G36602 NA non-coding downstream 430198 14485814 ~ 14488728 (-)
G36811 NA non-coding upstream 249108 15169047 ~ 15169358 (-)
G36967 NA non-coding upstream 641783 15561722 ~ 15562078 (-)
G36968 NA non-coding upstream 642209 15562148 ~ 15562363 (-)
G36969 NA non-coding upstream 644159 15564098 ~ 15565262 (-)
G36986 NA non-coding upstream 793736 15713675 ~ 15713975 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other downstream 616545 14292063 ~ 14302381 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other downstream 636306 14279674 ~ 14282620 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 862221 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 909390 14001934 ~ 14009536 (-)
LOC122345901 NA other downstream 1070856 13845403 ~ 13848070 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 286012 15205951 ~ 15264945 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other upstream 373917 15293856 ~ 15308440 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 430077 15350016 ~ 15367413 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 648080 15568019 ~ 15578967 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 783594 15703533 ~ 15709430 (-)

Expression


Co-expression Network