LOC122345384 (H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744)


Basic Information

Item Value
gene id LOC122345384
gene name H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 2528502 ~ 2531593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239485.1
aACTGTTAAGTCCCGCCCCCTGTGTCATCCGTACAAACATCATTCATCGATGGGGGATGGTAGAAGCAGATGCATGCTGCAATCCCATTGGCCTACCCGATATTCGAATCAACAACaggcgctctgattggccgagtCCAGCGCTCGCTTCGCCTCAAGCGTTCTCCGCCGAACGGGGTTTATTGTTCCTCCGAGTCAAGGGGCGAAATAGATTTTACACAGACCTCCCCGGATCCCATTCAAAGTAATACTTCGCTGAAATGGCAGGAGGAAAGGCAGGTAAAGACAGCGGCAAGGCCAAGGCGAAAGCAGTGTCTCGCTCGCAAAGGGCCGGACTTCAGTTCCCGGTGGGCCGTATCCACAGGCACTTGAAGACCCGCACCACAAGCCACGGCCGCGTGGGAGCCACAGCAGCCGTCTACAGCGCAGCCATCCTCGAGTACCTCACAGCCGAAGTAAGGCTCCTTCTCTTCTGCTGCAGACAAACCAACATCCACGCATTATATCGCAACTTGCTCAGGATTAGGAAATGGAAGCAAAACCTGACAAGCGCTCGAGTGTCGGAACCCACCCagGTTTTGGAGTTGGCAGGAAACGCTTCAAAAGATCTGAAGGTGAAGCGCATCACTCCTCGCCATCTACAGCTGGCCATCCGTGGAGACGAGGAGCTGGACTCGCTCATCAAGGCCACCATCGCCGGCGGAGGAGTCATTCCTCACATCCACAAGTCCCTGATCGGTAAGAAGGGCCAGCAGAAGACCGCGTAGTTCCCGCCGGGGCTCGCCGTGAACGTGAACTCAAGGACTTGTGTTTGGGATGTGACCAGATCGGCTTGtgttcgttcattcatttattcattcattcatgcgttcttttgttttgtttttaagttaatattaatgatatacTAGCTAACCACAAGTGATTTGTTAGTTTTGCGTTAATGTTCTATCGCCAAAACTAGAATGGCAAATAAGCCCCGCCCCCTTCGGCCCCAGGTGTCCAGTGTTTTAGAGAGAGACGAACAGGAAGTGTCCGATCTTTCCTGCTGTGACGGTGGAATTGTTTGTTAAATTGGCCAGAGTTGTGGAGCTGTTTTATACTGAAATGGaaatgataaacattttatatgaaa
>XM_043239486.1
ATGCTGCAATCCCATTGGCCTACCCGATATTCGAATCAACAACaggcgctctgattggccgagtCCAGCGCTCGCTTCGCCTCAAGCGTTCTCCGCCGAACGGGGTTTATTGTTCCTCCGAGTCAAGGGGCGAAATAGATTTTACACAGACCTCCCCGGATCCCATTCAAAGTAATACTTCGCTGAAATGGCAGGAGGAAAGGCAGGTAAAGACAGCGGCAAGGCCAAGGCGAAAGCAGTGTCTCGCTCGCAAAGGGCCGGACTTCAGTTCCCGGTGGGCCGTATCCACAGGCACTTGAAGACCCGCACCACAAGCCACGGCCGCGTGGGAGCCACAGCAGCCGTCTACAGCGCAGCCATCCTCGAGTACCTCACAGCCGAAGTTTTGGAGTTGGCAGGAAACGCTTCAAAAGATCTGAAGGTGAAGCGCATCACTCCTCGCCATCTACAGCTGGCCATCCGTGGAGACGAGGAGCTGGACTCGCTCATCAAGGCCACCATCGCCGGCGGAGGAGTCATTCCTCACATCCACAAGTCCCTGATCGGTAAGAAGGGCCAGCAGAAGACCGCGTAGTTCCCGCCGGGGCTCGCCGTGAACGTGAACTCAAGGACTTGTGTTTGGGATGTGACCAGATCGGCTTGtgttcgttcattcatttattcattcattcatgcgttcttttgttttgtttttaagttaatattaatgatatacTAGCTAACCACAAGTGATTTGTTAGTTTTGCGTTAATGTTCTATCGCCAAAACTAGAATGGCAAATAAGCCCCGCCCCCTTCGGCCCCAGGTGTCCAGTGTTTTAGAGAGAGACGAACAGGAAGTGTCCGATCTTTCCTGCTGTGACGGTGGAATTGTTTGTTAAATTGGCCAGAGTTGTGGAGCTGTTTTATACTGAAATGGaaatgataaacattttatatgaaa

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0007275 multicellular organism development biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0005488 binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239485.1 True 1135 mRNA 0.51 5 2528502 2531593
XM_043239486.1 False 942 mRNA 0.51 5 2528575 2531593

Neighbor

gene id symbol gene type direction distance location
LOC122345419 man1b1b,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 coding upstream 251468 2270213 ~ 2277034 (+)
LOC122346086 LOC107587426,LOC107757959,LOC107709681,LOC107560220,LOC107681216,LOC107560224,LOC107709689 coding upstream 263917 2249658 ~ 2264585 (+)
LOC122346081 LOC107681222,LOC107709689,LOC107560224,LOC107757958,LOC107587469,LOC107690695 coding upstream 320957 2178583 ~ 2207545 (+)
LOC122346053 edc4,LOC107733561,LOC107726309 coding upstream 611050 1906927 ~ 1917452 (+)
LOC122346055 nutf2l,LOC107592026,LOC107748755,LOC107697171,LOC107688399,LOC107593625,LOC107739636,LOC108410494,LOC103027823 coding upstream 628077 1899595 ~ 1900425 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding downstream 185420 2717013 ~ 2725424 (+)
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding downstream 227762 2759355 ~ 2812420 (+)
pebp1 pebp1 coding downstream 886311 3417904 ~ 3422144 (+)
suds3 suds3,LOC107569732,LOC107708245 coding downstream 965656 3497249 ~ 3505203 (+)
hspb8 hspb8,LOC107720866 coding downstream 1078879 3610472 ~ 3619055 (+)
G32737 NA non-coding upstream 107671 2418377 ~ 2420831 (+)
G32702 NA non-coding upstream 284615 2243667 ~ 2243887 (+)
G32694 NA non-coding upstream 451069 2076954 ~ 2077433 (+)
G32693 NA non-coding upstream 452457 2074389 ~ 2076045 (+)
LOC122344883 NA non-coding upstream 499176 2023363 ~ 2029326 (+)
G32765 NA non-coding downstream 46993 2578586 ~ 2579783 (+)
G32749 NA non-coding downstream 66657 2598250 ~ 2599639 (+)
G32770 figla non-coding downstream 76623 2608216 ~ 2609601 (+)
G32798 NA non-coding downstream 334573 2866166 ~ 2867373 (+)
G32819 sema4c,LOC107557380,LOC107708238,LOC107699920,LOC107697240 non-coding downstream 416500 2948093 ~ 3024488 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 260308 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 509352 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 623003 1900627 ~ 1905499 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other upstream 685489 1835148 ~ 1843013 (+)
G32611 prrc2b,LOC107704672 other upstream 702388 1822654 ~ 1826114 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other downstream 95491 2627084 ~ 2649361 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other downstream 797207 3328800 ~ 3343070 (+)
G33015 NA other downstream 1073593 3605186 ~ 4144396 (+)
G33174 NA other downstream 2090914 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 2112508 4644101 ~ 4902403 (+)

Expression


Co-expression Network