oclnb (ocln,oclnb,LOC107673430,LOC107595017,LOC107752508,LOC107592328,LOC107672774)


Basic Information

Item Value
gene id oclnb
gene name ocln,oclnb,LOC107673430,LOC107595017,LOC107752508,LOC107592328,LOC107672774
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10046898 ~ 10052562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239510.1
TGATGTGTTGTGAGAGAGACGGCAGATCTATGAAACTCTCTCGGTATTTAGCGGGCGTTTCCTGAAGGCTGAGCGTCTTGAAGGTCCGTGAAATACTCCTGTAAGGAGCGAGGAAGGCTTACAAATTATTTACCAGCAGTAAACGCTTTGGTAAGGATTGAggATTTGACCCAGATAACCCTGTGAAGTTTGTCCAGGAAGCTAACAACATGCCAAAAAAATCAAGTCACCCTCCTGCATATGGAGGCAGACATCATCGCCGAACCTCCCATCGCGCACCTTCTTATCACCCCGATGAAATGCTTCACTTTTACCGCTGGACATCACCCCCAGGTGTCATGAAGATCTtgtgcatcatcatcatcattttgtGTGTGGCTATGTTTGCCTGCGTAGCCTCCACACTGGCATGGGACTATGATGCCAGCGCCATGGGCCTTGGGAGTCTTGGGATGGGAGGCTATGGAGGCAGCTATAGCGGTGGATCATACAGTGGAGGATCATACGGCGGTGGATCATACGGCGGTGGGCTCAGTGGATATGGAGGAGGCTATGGTGGGGGTCTCGGTGGCTATGGCTATGGAGGCGGCACGTACATGGACCCAAAATCTGGCAAGGGTTTCATCATCGCGATTGCTGCAATCACCTTTATTGCTGTGCTCATCATCTTCGTCCTGGTGGTGTCGAGGCAGAACGCTGCACAGTCTCCCTCGTTCTATCTGGCCTCCATCATTATTTGTGCCATCCTGGCTGCGCTCATGCTCATCGCCACCATCGTGTACCTGGTCGCTGTTAACCCCACCTCTCAGACGTCTGGATCCATGATgtataatcagatcttgcagcTGTGTGCGCAATACCAGAACCAAGATCAGGCCTCTggcatttttataaatcaatatttatacCACTATTGTGTAGTGGAGCCTGAAGAGGCCATTGCCATAGTTCTTGGGTTTCTGGTTGTGGTCGGATTGATCATCTTACTTGTGTTCGCGGTGAAGACCCGAGGGCAGATCAGGAGATACGGCAGGGAGCGCGTTCTGTGGTATGACGTGAAGACCATCACCGACGGACTCACATCCCAAGGCATCGGGGAATGGgttAATAATGTGTCTGGAGATCCAGAGGCTTTTGTCAATGACCACAATGATCAAGTTGCAGTTGCACAGCCAATGGTTCACAGCCAGAAACCAGTTTACGTTccaagtaGTTCTGACGTGACAAGCTCTTTAAGTGGACTGAAAAGTAAACTGAGAGACTATGACACTGGAGAGTCTGGAGATGAGCTGGACACGGACTATCAAAGTGAGTATCCTCCTATCATTAATGAGCAGGAGAGGCTTGAGTACAAGAGAGAGTTTGACAGAGACCACATGGAGTACAAGCGTCTTCAGTCTGAGCTAGATGATATTAATCAGGGCTTGGCAGATACGGATCGAGAGCTAGATGGCTTGCAGGAAGGCAGCCCACAGTTCATGGATGCCATGGATGTGTACAGCAGGCTCAAAAGTTTGAAGAAGTCTCCAGACTAtcagatgaaaaagaaaaggtgtAAAGAGCTGAAGACAAAACTGTCCTTGATCAAAAGAAGGGTCAGCGACTATGACCACAGACAATAAAACCAGGCACTAGAAACTCCGGAGAGTATGTTGCCacatgatgttttgttttgggacTTTAGTGTATCTTTATGTCTGTATTAAAAATCTGTATCACTGTTATTATCAAAAACTGTATGGCTGCTGTATGACAGGTTTTTTGCTTTTAAGTAAGCTTGATCAAAATATTGTGGTATcaatgaagtatttttttattttatttttaaagctagATAAAGtcttcttttaacatttttatctttttctgaAGATATGTAGTCAAGTTAAATTTAGTGTAGGCAATCTTTAATATGAGCAAAACTGTGACcacttttttttgtagtttcagGGATCTTAAAATACATTCTAATGTTGTTTGTTGTAATGTCTTtgtggcttttcttttttacttgtTGATTAATCTGTCACCAGAATAACAAtctatgctgtttttttaagcatgcaCAGAACAGGTGTGAATTcagtttaatttcatttcattatttggtTCTTTAAATCTATAGAGAATTAAACCATATTAATGTGGCAGACGAAATATGTTGAATGTACAGTACACTTTTATGCTCGTTATTTGTGTAAAGATTTGGTCAAATAAAAGGCATTCAATTTCAAA
>XM_043239511.1
TCACTGATGTGTTGTGAGAGAGACGGCAGATCTATGAAACTCTCTCGGTATTTAGCGGGCGTTTCCTGAAGGCTGAGCGTCTTGAAGGTCCGTGAAATACTCCTGTAAGGAGCGAGGAAGGCTTACAAATTATTTACCAGCAGTAAACGCTTTGATTTGACCCAGATAACCCTGTGAAGTTTGTCCAGGAAGCTAACAACATGCCAAAAAAATCAAGTCACCCTCCTGCATATGGAGGCAGACATCATCGCCGAACCTCCCATCGCGCACCTTCTTATCACCCCGATGAAATGCTTCACTTTTACCGCTGGACATCACCCCCAGGTGTCATGAAGATCTtgtgcatcatcatcatcattttgtGTGTGGCTATGTTTGCCTGCGTAGCCTCCACACTGGCATGGGACTATGATGCCAGCGCCATGGGCCTTGGGAGTCTTGGGATGGGAGGCTATGGAGGCAGCTATAGCGGTGGATCATACAGTGGAGGATCATACGGCGGTGGATCATACGGCGGTGGGCTCAGTGGATATGGAGGAGGCTATGGTGGGGGTCTCGGTGGCTATGGCTATGGAGGCGGCACGTACATGGACCCAAAATCTGGCAAGGGTTTCATCATCGCGATTGCTGCAATCACCTTTATTGCTGTGCTCATCATCTTCGTCCTGGTGGTGTCGAGGCAGAACGCTGCACAGTCTCCCTCGTTCTATCTGGCCTCCATCATTATTTGTGCCATCCTGGCTGCGCTCATGCTCATCGCCACCATCGTGTACCTGGTCGCTGTTAACCCCACCTCTCAGACGTCTGGATCCATGATgtataatcagatcttgcagcTGTGTGCGCAATACCAGAACCAAGATCAGGCCTCTggcatttttataaatcaatatttatacCACTATTGTGTAGTGGAGCCTGAAGAGGCCATTGCCATAGTTCTTGGGTTTCTGGTTGTGGTCGGATTGATCATCTTACTTGTGTTCGCGGTGAAGACCCGAGGGCAGATCAGGAGATACGGCAGGGAGCGCGTTCTGTGGTATGACGTGAAGACCATCACCGACGGACTCACATCCCAAGGCATCGGGGAATGGgttAATAATGTGTCTGGAGATCCAGAGGCTTTTGTCAATGACCACAATGATCAAGTTGCAGTTGCACAGCCAATGGTTCACAGCCAGAAACCAGTTTACGTTccaagtaGTTCTGACGTGACAAGCTCTTTAAGTGGACTGAAAAGTAAACTGAGAGACTATGACACTGGAGAGTCTGGAGATGAGCTGGACACGGACTATCAAAGTGAGTATCCTCCTATCATTAATGAGCAGGAGAGGCTTGAGTACAAGAGAGAGTTTGACAGAGACCACATGGAGTACAAGCGTCTTCAGTCTGAGCTAGATGATATTAATCAGGGCTTGGCAGATACGGATCGAGAGCTAGATGGCTTGCAGGAAGGCAGCCCACAGTTCATGGATGCCATGGATGTGTACAGCAGGCTCAAAAGTTTGAAGAAGTCTCCAGACTAtcagatgaaaaagaaaaggtgtAAAGAGCTGAAGACAAAACTGTCCTTGATCAAAAGAAGGGTCAGCGACTATGACCACAGACAATAAAACCAGGCACTAGAAACTCCGGAGAGTATGTTGCCacatgatgttttgttttgggacTTTAGTGTATCTTTATGTCTGTATTAAAAATCTGTATCACTGTTATTATCAAAAACTGTATGGCTGCTGTATGACAGGTTTTTTGCTTTTAAGTAAGCTTGATCAAAATATTGTGGTATcaatgaagtatttttttattttatttttaaagctagATAAAGtcttcttttaacatttttatctttttctgaAGATATGTAGTCAAGTTAAATTTAGTGTAGGCAATCTTTAATATGAGCAAAACTGTGACcacttttttttgtagtttcagGGATCTTAAAATACATTCTAATGTTGTTTGTTGTAATGTCTTtgtggcttttcttttttacttgtTGATTAATCTGTCACCAGAATAACAAtctatgctgtttttttaagcatgcaCAGAACAGGTGTGAATTcagtttaatttcatttcattatttggtTCTTTAAATCTATAGAGAATTAAACCATATTAATGTGGCAGACGAAATATGTTGAATGTACAGTACACTTTTATGCTCGTTATTTGTGTAAAGATTTGGTCAAATAAAAGGCATTCAATTTCAAA
>XM_043239512.1
CTGATGTGTTGTGAGAGAGACGGCAGATCTATGAAACTCTCTCGGTATTTAGCGGGCGTTTCCTGAAGGCTGAGCGTCTTGAAGGTCCGTGAAATACTCCTGTAAGGAGCGAGGAAGGCTTACAAATTATTTACCAGCAGTAAACGCTTTGGTAAGGATTGAggATTTGACCCAGATAACCCTGTGAAGTTTGTCCAGGAAGCTAACAACATGCCAAAAAAATCAAGTCACCCTCCTGCATATGGAGGCAGACATCATCGCCGAACCTCCCATCGCGCACCTTCTTATCACCCCGATGAAATGCTTCACTTTTACCGCTGGACATCACCCCCAGGTGTCATGAAGATCTtgtgcatcatcatcatcattttgtGTGTGGCTATGTTTGCCTGCGTAGCCTCCACACTGGCATGGGACTATGATGCCAGCGCCATGGGCCTTGGGAGTCTTGGGATGGGAGGCTATGGAGGCAGCTATAGCGGTGGATCATACAGTGGAGGATCATACGGCGGTGGATCATACGGCGGTGGGCTCAGTGGATATGGAGGAGGCTATGGTGGGGGTCTCGGTGGCTATGGCTATGGAGGCGGCACGTACATGGACCCAAAATCTGGCAAGGGTTTCATCATCGCGATTGCTGCAATCACCTTTATTGCTGTGCTCATCATCTTCGTCCTGGTGGTGTCGAGGCAGAACGCTGCACAGTCTCCCTCGTTCTATCTGGCCTCCATCATTATTTGTGCCATCCTGGCTGCGCTCATGCTCATCGCCACCATCGTGTACCTGGTCGCTGTTAACCCCACCTCTCAGACGTCTGGATCCATGATgtataatcagatcttgcagcTGTGTGCGCAATACCAGAACCAAGATCAGGCCTCTggcatttttataaatcaatatttatacCACTATTGTGTAGTGGAGCCTGAAGAGGCCATTGCCATAGTTCTTGGGTTTCTGGTTGTGGTCGGATTGATCATCTTACTTGTGTTCGCGGTGAAGACCCGAGGGCAGATCAGGAGATACGGCAGGGAGCGCGTTCTGTGGTATGACGTGAAGACCATCACCGACGGACTCACATCCCAAGGCATCGGGGAATGGgttAATAATGTGTCTGGAGATCCAGAGGCTTTTGTCAATGACCACAATGATCAAGTTGCAGTTGCACAGCCAATGGTTCACAGCCAGAAACCAGTTTACGTTccaagTTCTGACGTGACAAGCTCTTTAAGTGGACTGAAAAGTAAACTGAGAGACTATGACACTGGAGAGTCTGGAGATGAGCTGGACACGGACTATCAAAGTGAGTATCCTCCTATCATTAATGAGCAGGAGAGGCTTGAGTACAAGAGAGAGTTTGACAGAGACCACATGGAGTACAAGCGTCTTCAGTCTGAGCTAGATGATATTAATCAGGGCTTGGCAGATACGGATCGAGAGCTAGATGGCTTGCAGGAAGGCAGCCCACAGTTCATGGATGCCATGGATGTGTACAGCAGGCTCAAAAGTTTGAAGAAGTCTCCAGACTAtcagatgaaaaagaaaaggtgtAAAGAGCTGAAGACAAAACTGTCCTTGATCAAAAGAAGGGTCAGCGACTATGACCACAGACAATAAAACCAGGCACTAGAAACTCCGGAGAGTATGTTGCCacatgatgttttgttttgggacTTTAGTGTATCTTTATGTCTGTATTAAAAATCTGTATCACTGTTATTATCAAAAACTGTATGGCTGCTGTATGACAGGTTTTTTGCTTTTAAGTAAGCTTGATCAAAATATTGTGGTATcaatgaagtatttttttattttatttttaaagctagATAAAGtcttcttttaacatttttatctttttctgaAGATATGTAGTCAAGTTAAATTTAGTGTAGGCAATCTTTAATATGAGCAAAACTGTGACcacttttttttgtagtttcagGGATCTTAAAATACATTCTAATGTTGTTTGTTGTAATGTCTTtgtggcttttcttttttacttgtTGATTAATCTGTCACCAGAATAACAAtctatgctgtttttttaagcatgcaCAGAACAGGTGTGAATTcagtttaatttcatttcattatttggtTCTTTAAATCTATAGAGAATTAAACCATATTAATGTGGCAGACGAAATATGTTGAATGTACAGTACACTTTTATGCTCGTTATTTGTGTAAAGATTTGGTCAAATAAAAGGCATTCAATTTCAAA

Function

symbol description
oclnb Predicted to be located in bicellular tight junction and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including EVL; digestive system; extension; pleuroperitoneal region; and sensory system. Human ortholog(s) of this gene implicated in Crohn's disease and pseudo-TORCH syndrome 1. Orthologous to human OCLN (occludin).
ocln Enables protein domain specific binding activity. Involved in several processes, including bicellular tight junction assembly; negative regulation of macromolecule metabolic process; and positive regulation of blood-brain barrier permeability. Acts upstream of or within cell-cell junction organization. Located in several cellular components, including bicellular tight junction; cytoplasmic vesicle; and lysosomal membrane. Part of protein-containing complex. Implicated in Crohn's disease and pseudo-TORCH syndrome 1.

NR:

description
occludin

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239510.1 True 2235 mRNA 0.44 9 10046898 10052558
XM_043239511.1 False 2226 mRNA 0.44 9 10046898 10052562
XM_043239512.1 False 2233 mRNA 0.44 9 10046898 10052559

Neighbor

gene id symbol gene type direction distance location
gtf2h2 gtf2h2,gtf2h2c,LOC107672775,LOC107595044,LOC107592329,LOC107752507,LOC103032811,LOC102292669 coding downstream 124 10042534 ~ 10046774 (-)
naaladl1 naaladl1,si:ch211-214j8.1,LOC107595014 coding downstream 12494 10028474 ~ 10034404 (-)
tango2 tango2,LOC107673391,LOC107595038 coding downstream 185524 9843314 ~ 9861374 (-)
tmem150aa tmem150aa,LOC107750168,LOC107672765,LOC107673390,LOC107709874 coding downstream 205819 9831999 ~ 9841079 (-)
si:ch211-102c2.8 LOC107595037,LOC107709829 coding downstream 217858 9816868 ~ 9829040 (-)
marveld2b marveld2b,LOC107673429,LOC107595015,LOC107744415,LOC107672714,LOC107592409,LOC107752498 coding upstream 1417 10053979 ~ 10058774 (-)
ak6 ak6,LOC107595020,LOC107592327 coding upstream 6347 10058909 ~ 10060421 (-)
ankrd34bb LOC107672721,LOC107744482,LOC107595021,LOC107673432,LOC107592407,LOC107752509 coding upstream 21410 10073972 ~ 10079484 (-)
dhfr dhfr,LOC107673433,LOC107744483,LOC107672723 coding upstream 27729 10080291 ~ 10083670 (-)
si:ch211-214j8.12 LOC107744420,LOC107752499,LOC107592325,LOC107672795,LOC107579027,LOC107595041 coding upstream 31157 10083719 ~ 10087885 (-)
G34877 NA non-coding downstream 268660 9777633 ~ 9778238 (-)
G34871 NA non-coding downstream 280291 9766268 ~ 9766607 (-)
G34869 NA non-coding downstream 282366 9764073 ~ 9764532 (-)
G34704 NA non-coding downstream 798857 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 986084 9013306 ~ 9060814 (-)
G35035 NA non-coding upstream 228847 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 285185 10337747 ~ 10341167 (-)
G35107 NA non-coding upstream 326204 10378766 ~ 10378998 (-)
G35139 abca2,LOC107672707,LOC107730718 non-coding upstream 460368 10512930 ~ 10513285 (-)
G35142 NA non-coding upstream 464109 10516671 ~ 10517342 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 644275 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 826370 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 1116845 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 1369180 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1615312 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 272397 10324959 ~ 10335343 (-)
G35122 NA other upstream 408646 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 815802 10868364 ~ 10874064 (-)
G35384 NA other upstream 871365 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 907749 10960311 ~ 10969118 (-)

Expression


Co-expression Network