LOC122345410 (hspb8,LOC107720866,LOC107561261)


Basic Information

Item Value
gene id LOC122345410
gene name hspb8,LOC107720866,LOC107561261
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 4137531 ~ 4141903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239522.1
GGACGGGGAGGGTCCTCGGTCAGCTGTCGTGAGCCTCCGAGCACTTTCTGGACTTTGTAGACCGGTAAATCACATATAAACCAGTGGAACGAGTTTACATCGTCAGTAAACTTCTAGGAGCCTTACGTGCGCGCGGTATTACGCGTAAACTTGGGTGCGTAATTAAGCGCCTTGAGACTTTTTCAAACTGCGTTCTTTTTCATTCGTTTTGAACGAAAAAGTCACTTTTTTCCCAGTTTCACGATGGCAGAGGGGGATTACTACACTATGGGCAACCGGCAGAGGATTCCGAGGGATCCGTTTCGCGAACAGTCGCTCTCATCTCGATTCATGGACGATGACTTTGGACTGCCGCCTTTTCACGACGAGTTATCTATGGACTGGCCCGGCTGGGCGCGACCTCGACTGAGCGCCCGCCTTGACGCGCCGTGGACGGGCCCCTTGCGCTCGGGCTTCCCGCGGGGCTTCAGCGCCAGATACGGCGAGGGTCCGCGCAGAGCCAGCGCTCCTCCGTGCAACCCGGACGAGCCGTGGAAAGTGTGCGTGAACGTGCACAGCTTCAGACCCGACGAGCTTAATGTCAAAACTAAAGACGGTTTTGTAGAGGTGTCAGGGAAGCACGAGGAAAAGCAGGACGAGGGAGGAATCGTCACCAAAAACTTCACGAAGAAAATTCAGTAAGTGTCGTGATTGTATCAAAAGTTTTCCGGAGGCTTCTAGAATGATGAAGCGACTTCCCGAGGAATGTCACTCGGAGTTATTAAAGCGACACAAAGCCTTCCCGCTCCTCCACCCACCCCGACCTCTCCGCTTTCTTCTCGCTCTTCAGAGTCACGGCAGACGAAAAGAATCAAAGTTCGGAGATAAAATAGAAAAGGAAACTCTTGTTAGGCTCAGACAACATATCGTGTAGCTCTGATGTCTGCAGTAATTAAGCGACATAGtgatttgatttttcttttcttttttttcgtcGCCGTGCTGTTTCTCTGACAGACACCGAGAAAGAAACTCtaagaaagaaaaggaattaAATTATTGAACAAACGCGGCGCTATTTTAGCATTCTAACGCAAGAG

Function

symbol description
hspb8 Predicted to enable protein homodimerization activity. Predicted to be involved in cellular response to unfolded protein. Predicted to be part of chaperone complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including cephalic musculature; immature eye; midbrain hindbrain boundary neural rod; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2L and distal hereditary motor neuronopathy type 2A. Orthologous to human HSPB8 (heat shock protein family B (small) member 8).

NR:

description
PREDICTED: heat shock protein beta-8-like

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239522.1 True 1079 mRNA 0.50 2 4137531 4141903

Neighbor

gene id symbol gene type direction distance location
slc39a14 slc39a14,LOC107656812,LOC107560970,LOC107561269,LOC107702220,LOC107707824 coding downstream 263642 3849493 ~ 3873889 (-)
susd2 LOC107656804,LOC107561267,LOC107702221,LOC107707826,LOC107560963 coding downstream 290361 3822118 ~ 3847170 (-)
kremen1 kremen1,LOC107656811,LOC107561268,LOC107560966,LOC107702222 coding downstream 327835 3753979 ~ 3809696 (-)
xbp1 xbp1 coding downstream 474621 3659704 ~ 3662910 (-)
si:dkey-1k23.3 LOC107560961,LOC107656799,LOC107702214,LOC107755870 coding downstream 515127 3619178 ~ 3622404 (-)
LOC122345409 htr7c,LOC107561270,LOC107707833,LOC107656814,LOC107560967,LOC102292089 coding upstream 145896 4287799 ~ 4319735 (-)
LOC122346182 NA coding upstream 208324 4350227 ~ 4370478 (-)
atad1a atad1a,LOC107702218,LOC107561272,LOC107656802,LOC107719316,LOC103469725 coding upstream 314916 4456819 ~ 4462417 (-)
galnt9 galnt9,LOC107600134,LOC107702212,LOC107719314,LOC103023100,LOC107570788,LOC108412666 coding upstream 345938 4487841 ~ 4557844 (-)
si:dkey-112e17.1 LOC107656819,LOC107548941,LOC107741260,LOC107672633,LOC107707820,LOC107600127 coding upstream 785424 4927327 ~ 4947953 (-)
G33109 NA non-coding downstream 39158 3607467 ~ 4098373 (-)
LOC122345411 NA non-coding downstream 86059 4050782 ~ 4051472 (-)
LOC122345413 NA non-coding downstream 168567 3967856 ~ 3968964 (-)
G33140 htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967 non-coding downstream 232985 3898591 ~ 3904546 (-)
G33124 NA non-coding downstream 484643 3648466 ~ 3652888 (-)
G33300 NA non-coding upstream 718096 4859999 ~ 4902402 (-)
G33310 NA non-coding upstream 771978 4913881 ~ 4915751 (-)
G33330 NA non-coding upstream 883042 5024945 ~ 5027815 (-)
G33332 NA non-coding upstream 890660 5032563 ~ 5033954 (-)
G33333 NA non-coding upstream 892208 5034111 ~ 5053903 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 238953 3878650 ~ 3898578 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other downstream 384767 3744675 ~ 3752764 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 1124712 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 1177354 2951462 ~ 2960177 (-)
add2 add2,LOC107668755 other downstream 1531614 2586587 ~ 2605917 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 2953 4144856 ~ 4193081 (-)
G33175 NA other upstream 480587 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 2682268 6824171 ~ 6826182 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other upstream 2780943 6922846 ~ 6943203 (-)
G33998 LOC108444092 other upstream 3240443 7382346 ~ 7397153 (-)

Expression


Co-expression Network