si:ch211-114c12.5 (LOC107592362,LOC107726358,LOC107744476,LOC107599968,LOC107672711)


Basic Information

Item Value
gene id si:ch211-114c12.5
gene name LOC107592362,LOC107726358,LOC107744476,LOC107599968,LOC107672711
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10986905 ~ 10992885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239528.1
tgttgtttagttattttgaaatgaaagacCTTACAATAGCATTCCAGCCCACATAAATTGATTACATAAGCTCATCATACCAATACCAGTGCCCTTATCAGTGTTCTCCCCTTAGTTAACAGAAGTTTACACGAAATGATAGGTGAGATATTATGTGTCAGTGACTAGGGTGGACTAGGGTAGGAGACAAAGTTCATTGCGTAGTCCACACAGATGACATTATATTGTAGAGAAGTACCTCGGGTCTATGTGCTTTGCTTCTGTTGGAGTGAAACACAAATCTCTGAGCTGGCCTGCTCCCGTGATAGAAAAGACTATATAGTTATAAAGCTGGACTTTCAAACCAACCAACATGAAGAGTATCCTGAAGAGCAAAAAATACGAGGCACCTGAAGCTGGTTTGAGTAACTCTATCGGAGCTGTACGCTGGAATCTTCCTGATGAAAGTCTTCAGACACACAGCTCAGTTCCTACCAAGAGCAGTCAGAGTCCTAGACAAAAGGACTTGAAGGATCTCCGCAGCCTCCAGGAATGTGTAAAGTTTATCACTCAGTGGAAACAGCAGGTGGAACATATCTGCAGGccTGGCTCCAGTGCAGATGAAGGGCCAAATACCAGTGTGCAAGCAGAGCCGCATAGTCTGGAGCAATGCCGCAAACTCATCCTTGATTGGGCACAGGAGCTCAAGAAAGTTGACAATTTGTTCGGTGAGGGTACATTGCGACAAGAAAGAGATATATCATGGGAGCAGAAAGAGAACAAGATGGATGCTGCCAAGCACATGGAGCAGAAGATTATGGAATGGGCTAAAGAACTTCAGGCTGTGTCGGAGCGCTGTGGTGTGATGAGACAAGAATTAGTCAATTTTCTGAAGCAGCTGGAACTGAAGAAGAGGAAAATCTTGACTCTGTTGCCTTTTTTGGAATTCGTAACTTGGTCTCTACTGAAACAGGACAGCCAGgGTGTTGTTCCACAGCTATGGCTCCTCAGCAAACAACGTACCTGGAAAACAGAGACACCGAAGTACATTCCAAACTTAGTATGGAGATGGATCTGCAGTGCTTCAGTGGACATCACTTTGGACCCTATGACAAACCATCCATGGTTGCAGCTCTCTGAAGACAAGAAGAAGGTACAAGAAGCTCTGAATGAAACTGAAGTGTCCTACAGTACCCAGCGCTCCGACAGCTGGCCGTGTGTCCTGGGCTGGGAAGGGCTCACTTCCGGTCGGTACTATTGGGAAATTGATATTGCCAACAATGGCTACTGGCGTATTGGAGTGACCACCGCATCCTCCAAAAGGCACGGCCGGTGTCCCATGAATCCCTCTGAAGGTTACTGGACTATATGGAGAAGCACACGGCAGTTTTACGCATGCACCAAGCCAGAGACTGAGCTACCTCTGTCACTTGTCCAAAAACTGGGAGTATACCTGGACTATGAAGAAGGACAGGTGTCTTTCTATAAAGTAGAGACGCGCTCGCATATCTATACATTCACTGCAAATTTCCGGGAAAAGTTGTACCCGCTTTTCGCACCTTTGGATGGACGCACACTTATCACACTGTCCTCTACAGAAGCCACACCAGAAGCGTCCTCTTTTGAAAGTGTACAATTCTTTTAACTTGACAAATGGTTCAGTATGGGAATAATGAGAACAAGGGTAAGATGCTGCCGTTAATCAAACTCAAGAGCAGATCGGAAAGGTGGAAAAAATAATGGATGAGATCCTGTGGATACTGTGGAGTACTTTTGGTTATAAACTTCAACTTTAGTACAAGTAGTAAAATTCTGAGGATTTTTATGAACTCCCTTTTAAtggaaaatgttgaaatttgtcACATCCTCAGATTGCTCCGGCGTTAGTTGTAAGTTCTGtgaattttaaatgttgtgCTCACAATGCACAGGTCAATTAGTCCTTATGGAGCATGACTACCAATTGGATAAATCAATATTctcaatcattttttaaagttatgtTTCTGAAATCTTCTCCATTTCATCCAAATCAAAAATGCCTAGGACTACATattatagaaaatgtttttatataatccatgaaaatatttgatGAAATTATGAAAGTTTGCTTAATATAGCACCGTCTACTGCAGAAATAGTGTGTAAACTTTGAGGCTGGGATTTGCCATTCTAATAAATTTAGGGTAATATGTATCCAGGTTTCAGGAAGCTTTGTTGCTTTAAGTGCCAACAGTGAACAACACTATGTTTATGAGCTCCAAATTTATAGCAGTTGTAACAcgtaaaacattgttttataagtaaatgtttatacaatgtaatcattttattatgaatcTTAGATGCATGTACCTTatcttcattatttaaaaactttactgTCATAATGCTGTGAAAATGTTACAGTGCATTAACAGTGGAACCAGAAAAGAAATCAAGAcacaaatgattgtttttaaaaagaatgtatttgaaaaataataataaaaaaaacaaaaacttcttactacaaataaatgcatgtgtatatatgtataaaagaTGTGTATACAgtaaagatagaaaaaaaaaaaacagcataaaaatatacatcaagTTGAAACAGTAGAATAGGATTATCAAGATTACCAGGAGGGACATGCCCTGAGTTCTtgctgatttaatttagttataaaCGGAAA

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239528.1 True 2666 mRNA 0.40 12 10986905 10992885

Neighbor

gene id symbol gene type direction distance location
capga capga,LOC107599981,LOC107687675,LOC107744500,LOC107726365,LOC107592395,LOC107672725 coding upstream 857 10981587 ~ 10986048 (+)
mrps31 NA coding upstream 14591 10969502 ~ 10972314 (+)
tm4sf21a si:ch211-137i24.10,LOC107687679,LOC107744498,LOC107672738,LOC107726377,LOC107599980 coding upstream 23301 10960340 ~ 10963604 (+)
sox19a sox19a,LOC107687705,LOC107744453,LOC107726363,LOC107672743,LOC107599979,LOC107592398 coding upstream 38490 10946115 ~ 10948415 (+)
eif4a1b eif4a1b,if4a1,LOC107599941,LOC107592294,LOC107726387,LOC107687701,LOC108443969,LOC106560692 coding upstream 45262 10934545 ~ 10941643 (+)
pdha1a pdha1a,LOC107599948,LOC107672749,LOC107592287,LOC107726384 coding downstream 27436 11020321 ~ 11028005 (+)
rps6ka3a rps6ka3a,LOC107687667,LOC107599949,LOC107726369,LOC107672778,LOC107592284 coding downstream 36202 11029087 ~ 11041122 (+)
eif1axa eif1axb,EIF1AX,eif1ax,LOC102359197,LOC107726370 coding downstream 48255 11041140 ~ 11044571 (+)
LOC122345703 LOC107687703,LOC107599954,LOC107672740,LOC107747828,LOC107592360,LOC107599982,LOC107687702,LOC107747827 coding downstream 81005 11073890 ~ 11099337 (+)
LOC122345519 LOC107747818,LOC107687663,LOC107599955,LOC107680407,LOC107726394 coding downstream 116896 11109781 ~ 11124349 (+)
G35202 NA non-coding upstream 148538 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 170604 10813457 ~ 10816301 (+)
G35081 NA non-coding upstream 439280 10547221 ~ 10547625 (+)
G35043 NA non-coding upstream 653097 10333219 ~ 10333808 (+)
G35042 NA non-coding upstream 656583 10329889 ~ 10330322 (+)
G35267 NA non-coding downstream 194369 11187254 ~ 11187694 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 211615 11204500 ~ 11209405 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 389785 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 412643 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 421156 11414041 ~ 11414688 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 53152 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 250846 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 847172 10064217 ~ 10139733 (+)
si:ch211-102c2.4 NA other upstream 1187547 9796381 ~ 9799358 (+)
man1b1b man1b1b,man1b1,LOC107709694,LOC107681241,LOC107560236,LOC107757969,LOC107690671,LOC107587425 other upstream 2115387 8864202 ~ 8871518 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other downstream 53594 11046479 ~ 11064446 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other downstream 143338 11136223 ~ 11150225 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 273757 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 645631 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 931343 11924228 ~ 11943110 (+)

Expression


Co-expression Network