efnb1 (efnb1,LOC107746350,LOC107700912,LOC107548494,LOC107596159,LOC107757535,LOC107655917)


Basic Information

Item Value
gene id efnb1
gene name efnb1,LOC107746350,LOC107700912,LOC107548494,LOC107596159,LOC107757535,LOC107655917
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13270402 ~ 13303696 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239540.1
GCTCAGTGGGAGTGGAGGTGATGGATCGCGAGCCACTGCGCTGTGAACGGTGTGCGGGACTGACTGCGGACGCACCGGATCCACGGTTGAGCGCCGAACAACTCCAAACAAGATCCGAGGCTAAAAGACGCGTCACTGACTCGCGAGGGAAGCGCCGAACTGCTGGAGTTTCCCGATCTGTTTATATCCTTGAGACGAAACTGTGCGCCCCTTTCTGCACGCGAGCCGGGAGCGGACAGTAGCTGATATCCCGTCTATCAACATGCACTAAAACGGCCAGATCGTACAATATCGGAAGCAGCAAGTCTCGGGAGTTTACTTTTCGTGGTCCTTTTCGAAAGAGAATCCAAATGGAATTGGACAGACATTTTTGGCAGTCCTGTGACTGACAGTTGGACACTTTGAACATGGATATAGGGCGATAAATTTCGGACGAGAACTGTTGCATATCTAAAGCGCATCTCTATGATCTGGGATCAAAAGCGAAAGGAGTCTAATTTTAAATCTGACACATGAGCAGGACCGGATTTGTGCACCAACCCGAACCCCAACGCGGGATTGATGGTCCTTATACCTGTGTGCATGTCACTCACCCCCTATCTAGCGTGATCTGACCTTTTACTAGGCTACTAGCTCAACTAATAGATGAGTACAATAAAAGAGTCAGGCGCTGCCGTCTACCTAAGTGCAAGGTAGCAGCGATTTTGGTAACAGAGAAACGTTGGCCCAGAAGCCGCCTGTGCAACGTAGTGCGACACCTTTTTTCCTCCAGGCAACGCTAGAAAATTTGGATTTGGAAGTTGAGCCATGGAGCCCCTCCGCCTGGACGCCTAACCTCCTCTGTTGCATGTGGTTCGGTAACCGGGAGTACAGTCGATCGAAAGGATCTAATCTTCTTGCTGGCTCGTGTCTCTCCGAGAACAGTGTAAGATGGCTGGAAGTGACGGCTCGTGGAAATATTACCTCTGGATTCTGACAGCCATGTGCAGATACGCGTTACCCGCAGCCAAATCACTGGAGTCTGTCGTGTGGAATTCACAAAATCCCAAGTTTGTGTCTGGGAAGGGCTTGGTGATCTACCCGGAAATCGGTGACAAACTGGACATTATCTGCCCCAAAGGGGAAATGGGGAGACCGTATGAGTTTTATAAACTCTACCTGGTGAAGAAAGAGCAGGCTGAGTCGTGCAGCACCATACTGGACCCCAATGTTCTGGTGACCTGCAACAAACCAGAGAAAGACATCAAATTCACCATCAAGTTCCAGGAGTTCAGTCCAAACTACATGGGACTTGAATTCAAACGCTTGACAAACTATTACATCACCTcaaCTTCTAATGGAACACAGGAAGGGTTGGAAAACAGAGAAGGTGGGGTTTGTAGCACGAGATCTATGAAGATCATCATGAAAGTGGGCCAAGATCCAAATGCACCAGATCCAGATTTAACAGACCTCCCAGACCAGGACCGGGACAATGAGATCAAGGACCCCACAACCAGCCCTTCCCGCAAGATAGACCGAGGCAGAGACGCAGATGGGAACGGATCTATAATGCCCGGCAGAGACACGAGAAACCAGGATAACAGTCCCGGGTCAGTGGAAGGAATTTTCGGCTCTAAACCGGCCCTCTTCGCTGCCATCGGAGCTGGCTGTgtcatcttcctcctcatcatcatcatcctcatcgtCTTGCTCCTCAAGCTTCGCAAGAGAACCCGCAAGCACTCACAGCCCAGGGGCGGGACTGCCCTGTCACTCAGCACTCTGGCCACGCCCAAAGGAGCCGCCCAGGCCGGCTCAGAGCCGAGTGACATCATCATCCCCCTGCGGACAACAGAGAATAACTACTGTCCACACTATGAAAAAGTGAGCGGAGACTATGGGCACCCCGTCTACATAGTGCAGGAAATGCCACCCCAGAGCCCCGCCAATATCTACTACAAAGTCTGAGGGAAAGCGAGCGAAGTAACCGCAATAAGAACTCGTTTTTGTAAGGTATCctgaatctttttttcattaccTAACCCTGTCTGCTCCGTGTGCAAGAGGATTGAGAGGGAGAAGTGGAAAAGAGGAATGAAAAGGACTACACGGATGACATTCCTCTCAGATTTCCTTCCCTCCGTCCCTTTTCCGAACACTACactgtgtgtacgtgtgtgtgccGGTCGCTCTCGATGTGTGTGAAACGGCACAGAAAAACCTCCCCAAATTGCGTGGCACTCAGGCACGGACTTCACTGCTGAAGAACAGCCGACAACCAATCACAGAGGGACGCTAGAGTGACATCACAAAGCAGGAAGCTCTcgtttgtgtttcttttgtaCCGTTGCGACTCTtcgcttagtttttttttgtctgttttacaTCTCTCAATCCAtcacagtgttttgtttttatcagcatcAACTCGATTCTTGCAGCTTTCACAGTGTCTCGCTCAGAGAAAATGTCTTAAACACTGTTACGAATGCCTCTCTCTTCCTCACACACTCAGTATGTCCTCTCATTTCCTTGCGTCTCTCCAGACACTCATTCATTTTACATGCTGTAGAGGCAATTGAACAAAAACACGCACTCGCACTCGTACACACTTCGGTGTTCACAGGTCAGTAACAAACAGCTTCTCGGTGGAAAAGCGCGCGAGTGAAATAGGGAATTTAATACGTAAACACCAGTGTCAGACCTTCCAGAACTCCCGGTCtgctttttgttcatttgagaATCGTTTCAGTTGAAATTCTCTCTCCTCTCAGCCGAACACAAGTAGTTATTTGCTATCTGTTGTCAGTGATGCGTGAAGTGCTGAATAATATTTGTATcttgtcataattttttttcttattctatCTCCCAAAGGTTTGTAGGTCAAAAACATCTTTAGGGATTTGCCTCTACACCATGAGCCTATGACCTCTTTTCAGTCACAGACATGCTAACGCGTATCTTTGCATAATTTAGTTCACtaacatgtctttttttttttttcgtctgttTGGATGTAGACATGGGCTCTAACAGTATGACCGTGTGTATGTGGAGTCCCATGCAGAAGCCAAAAATCCATCGACATACAGAACATGTGAAATTATGCCTTCACCTCTCCCTCCTTTCAGATATGCACATAAATTATCCCTGtttgcatacaaacacacagaaaaaaaaccccatccacgAATCAGAGAATCAAAACAAGCTCACCATATCATCCTGGAAAATCTAGTGCTAGATCTATTTTTATATGGATTGCACGTGAAATGATAAACAGCAAACAGTGGCGGCAGGTGTGTTTACGCCTATGCTAATTTCAAATTAGCAGCATTTGCATCTGGCCTCCagcgcagccaatcagaggaaGCCCAATATTTCTCTGTAGCTTTCTcgtaaaatagatttttaaaatgatatttcgATTAGggtttattgttgttgtttttttttttgttgtcgtttctTCTTAATTTAGTTTCTAAGGCCCGagattatgtaaataatgtatgttGGGAAAAAGTGTTGATATAAAGTTCCATTTTATTAGAGACCctgttaatgaaaatataattaggatttttgaaaatgcaaaagcttttgtaaatagtcttttttggaaaaagacattttgtaagTAAAATGTTTCCTGTCTCAtggtttcttctttttattttcctttttttccctccctgtTTCAGTTGGTTTTTGATAAAGGAGACTTAGAGGTCCCTGTACAACGGGTTTTAAAAGGTCAGCCTAAAGcagcaaaaacacatacaaCAAGCCCcttcacatacatacacactgacacacactttATCCTCCCTGTTTTACGAGGGGAtgttggtatttttattttgttttgtttagttttttacaaatGCTGTGATGGAACCAGGTCAAATATTCCATGACATAGTTCATAAAGGaggaaaaaaggagagagagagagttattactcaagaaatgcataaataccTACACACACTTACTCTTACTGACTGACCCAGCAGTCGTTCCTATAGCACACAATAtagatacacatatatacactatcAGACACAGGGCAAGCACCAGCAAACTTCTTTAACAAAACTAAACCAGCAACAGCTTGTGCAACTAAACTAATAATTTATGTGTGTCTGAGCTGTTTAAGGCAGTTCAGGTCTTTAGGATTGACCTTAGaagagcactttttttttttaattcatggctttgtttttttttttttttacccatagAAATGCACATGGGTGCACTGACCGTACCAGTCAGCTTATTAAAGTGGATCAGTCGCGGTATCACACTGcaacaaaatcattttcttgCATAGTAATTTTGTCTTGTTCTCCAGTACAAGTATCTAAGTATCTCCTAAACAAGAAATCCAAGAGTCTTTGGTGAGATCTATGCTTAAATAACGAAATACAGTCCTACATATTTAGATACTTAACtggaaaaatgctttttttagcaGCGTATTAACAAATGTTGACCCCAATTTTACCATAAACAGTAGCTTTCTCTGTACATGTTTAACAGGAAAAGCTGTGAATATTTTGTGTAGTTTTATGGATCTGCACCGCTGTAGTGGGATCTTATTCAGTCACTGACTGTCTTTTGCTGCAGGCTTTTTGCAGCTTAGCTTACACATTTGGTTTGCAGCACTCTTAACAGCTGTAAGGTATATGCTTCCTTTGATGATCGTCTGTATCATAACAataaggtgaaaaaaaaagagtcagcCATCTTGTTTATCAGATTAGACTTGAGGCTTTCCTCTCTAATGCTGCGGTCAGACACCTGTGACATTGTGTGGATCTCACTGACATCTGTTAATAACATTTCTCCCATTGAGGTTGACTTATTTGAGGAGAACTTACTTAAAACCCAAGCATTCACACAaacagacgcgcacacacacacacacacacactcgtacacACACTCCCCCTCAGGCAAAGAGACAGATTGGTGGTGACTTTTGACCCTTTAAGGATTATCACAATATTATGAGAGAGACAAATCTAATGAGAAAACCTTTTCTCTGGCCTAGATCCATCCTATCACACACAGTTCATTCACTTACTCTCAAAATTTACTTGTTCATAGAGCGGGTCAATGCAGTGCTGATGCCTTAGGCCAACCGCGactcccacaaaaaaaaaaaaaccttcacaaaaaaaaaaaaaaaagcttgtgcTGCACAATGTTTCCTCCTGCtgttgctgattttttttgttttttattattattattcagtgaactacattattattgttataattttcttttactaAGATTTTGTTGCAGATTTCAGTATTATTGATTTAAGTTTTGATGTATGTGTTGGCAGTGCTGATGCCCCTGTGGCGACAGCGTTTTCTTGTTTTGGTAGAATTCACACAGTGTCCTCAGAGTTCCCCGATATATGACACTAAAGCCAAGTCTCAGCCCTCAGAAAGCGTTTTAAAAggataaataaagttttttcctaTGGAA

Function

symbol description
efnb1 Predicted to enable ephrin receptor binding activity. Acts upstream of or within embryonic liver development and optic vesicle morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including alar plate midbrain region; central nervous system; hepatoblast; intestinal rod; and liver and biliary system. Human ortholog(s) of this gene implicated in craniofrontonasal syndrome and dysostosis. Orthologous to human EFNB1 (ephrin B1).

NR:

description
PREDICTED: ephrin-B1

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239540.1 True 5493 mRNA 0.43 5 13270402 13303696

Neighbor

gene id symbol gene type direction distance location
rxfp2l rxfp2l,LOC107655900,LOC107700901,LOC107596199,LOC107757506 coding downstream 119864 13118367 ~ 13150538 (-)
ophn1 ophn1,LOC107700916,LOC107596712,LOC107596162,LOC107655920,LOC107757505 coding downstream 219624 13020346 ~ 13050778 (-)
eda2r LOC107598184 coding downstream 315557 12943325 ~ 12954845 (-)
ttc33 ttc33,LOC107596169,LOC107757511,LOC107655901 coding downstream 358639 12894584 ~ 12911763 (-)
map1b map1b,LOC107596172,LOC107655889,LOC107757527,LOC107597920 coding downstream 406704 12844251 ~ 12863698 (-)
trnap-agg_13 NA coding upstream 71933 13375629 ~ 13375700 (-)
zgc:158432 NA coding upstream 84316 13388012 ~ 13391957 (-)
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding upstream 88960 13392656 ~ 13407947 (-)
rhogc rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231 coding upstream 105566 13409262 ~ 13411836 (-)
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding upstream 213947 13517643 ~ 13521568 (-)
G36063 NA non-coding downstream 161454 13108699 ~ 13108948 (-)
G36048 NA non-coding downstream 213697 13055569 ~ 13056705 (-)
G36012 NA non-coding downstream 336623 12933471 ~ 12933779 (-)
G36009 NA non-coding downstream 343940 12924743 ~ 12926462 (-)
G36004 fbp1b,LOC107718665,LOC107655925,LOC107596168,LOC107757529,LOC107596723 non-coding downstream 353588 12913626 ~ 12916814 (-)
G36104 NA non-coding upstream 13539 13317235 ~ 13317462 (-)
G36108 NA non-coding upstream 19235 13322931 ~ 13323222 (-)
G36200 eda,LOC107757537,LOC107700911 non-coding upstream 66514 13370210 ~ 13373755 (-)
G36213 NA non-coding upstream 76603 13380299 ~ 13438104 (-)
G36230 NA non-coding upstream 108948 13412644 ~ 13414387 (-)
G36047 NA other downstream 215545 13053844 ~ 13054857 (-)
G35936 NA other downstream 764444 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 950717 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1100992 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1454458 11795656 ~ 11815944 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 275365 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 350598 13654294 ~ 13699226 (-)
G36298 NA other upstream 413428 13717124 ~ 13718543 (-)
G36336 NA other upstream 514046 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 541707 13845403 ~ 13848070 (-)

Expression


Co-expression Network