LOC122345427 (LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743)


Basic Information

Item Value
gene id LOC122345427
gene name LOC107721568,LOC107697698,LOC107711701,LOC107654838,LOC108438743
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27001647 ~ 27014498 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239546.1
AGTTGTCAAATAGGGCAGAACACACACCCTGACTCCACACACACTGTCAGACTCTGCTCACTCCTTCTCTGGGATGAGTTTTGTTGTCCATGGCTGCCCCGACAGCAAGCGGATGGGGGTAACCGTGGAATGCCCTGGCTAGAGGAGGGATGAAGAGATGGACAAAGACAAGAGGAAGTTTAAAGTCAGTCAGTTATTGAGATTCTACCTGTTCAAGAGGCAGCACAGTAAGGCTTTAGCAAATGCCACTCAGTCCAGAGAGGAGACTAACAGCACCACAAACTCGGCTCAGTGTAATGCTGCTTTAACCGATGAGTATGCGACGTGGACGGAAGATGGTGACATCAAGGAGATCAACATCACGCATGTTGTTAAAGAGGGGGCAGAGAAAGCAGACCCCTCGCAGTTCGAGCTGCTCAAAGTGTTGGGGCAGGGCTCCTTTGGAAAGGTGTTTTTGGTACGAAAGGTAACCCCTCCCGACAGTAACCAGCTCTATGCCATGAAGGTCCTGAGAAAGGCCACACTCAAAGTGAGGGATCGTGTGAGAACAAAAATGGAGAGGGACATCCTGGCAGACGTCAACCATCCGTTTGTGGTTAAACTCCATTATGCTTTTCAGACTGAGGGTAAACTCTATCTGATTTTGGACTTCCTCAGAGGAGGGGATCTATTCACCAGGCTGTCAAAAGAGGTGATGTTTACAGAAGAAGATGTGAAGTTTTATCTAGCTGAACTGGCACTGGGTCTTGATCACCTGCACGGTCTCGGCATTATCTACAGAGATCTCAAACCTGAGAATATCCTCCTGGATGAAGAGGGACATATCAAACTCACAGatttTGGACTGTGTAAGGAGGCTATCGACCATGAGAAGAAGGCTTACTCCTTCTGTGGGACGGTGGAGTACATGGCTCCAGAGGTGGTTAACCGGCAGGGACACACGCACAGCGCTGACTGGTGGTCATTTGGCGTTCTGATGtttgagATGCTTACAGGTTCACTGCCATTCCagggaaaagacagaaaagaaacaATGAATCTCATCCTGAAAGCAAGGTTAGGGATGCCTCAGTTCCTGAGTGCTGAGGCTCAGAGCTTACTTAGAGCTCTGTTCAAGAGGAACCCTACAAACAGACTGGGTAAAGAATACACAATCAGATTGTTTTATAAACTTTTTAGACGAGAAATAAAACCTCCATTTAAGCCAGCTGTGGCCAGACCTGACGACACCTTTTACTTTGACTCAGAATTCACTTCTCGTACCCCTAAAGATTCCCCAGGCGTTCCCCCCAGTGCAGGGGCTCATCAGCTTTTCCGGGGCTTCAGCTTTGTTGCCACGGCGATGCTAGAGGAGGAGGGCAAAGAAGAGCCCTCTCAGCCCCCTCCACACCCTGTGGTACAGCAGCTTCATGGTAAGAACATCTTGTTCAGTGACGGTTACATACTGAAGGAGGACATCGGCATGggctctttctctgtctgcaaGCGCTGCATACACAAAGCAACCAACACAGAGTATGCAGTAAAGGTGATTGATAAAACAAGCACCGACCCATCAGAAGAGATTGAGATCCTGCTGAGATACGGCCAGCACCCCAACATCATCACTCTCAAAGATGTGTACGATAATGGGAAGCAGGTGTACCTGGTCACTGAGCTGATGCGAGGAGGCGAACTGCTGGATAGAATCCTCAAGCAGAAGTTTTTCTCAGAAAGGGAGGCTAGTGCTGTGCTGCACACTATCACAAAGACTGTGGAATACTTGCACTGTCAAGGGGTTGTGCACAGGGACCTGAAGCCAAGTAATATTCTATATGTTGATGAGTCTGGAAATCCAGAATCTCTGCGCATCTGTGATTTCGGTTTTGCCAAGCAGCTCCGGGCAGACAATGGTCTCCTCATGACACCCTGCTATACTGCCAACTTTGTAGCACCCGAGGTACTGAAAAGACAGGGCTATGATGAGGGCTGTGACATTTGGAGTCTTGGAGTATTACTATACACTATGCTTGCTGGTTTTACACCATTTGCTAACGGACCAGAAGATACTCCAGAAGAGATTCTGAGTCGGATAGGGAGCGGGCGCTTTACTCTGACAGGAGGCAACTGGGACGCTGTGTCTGATGCTGCCAAAGATCTGGTCTCTAAGATGCTTCACGTGGATCCTCACCAGCGACTCACAGCCAAGCAGGTCCTGAAGCATCCATGGATCATTCAAAGAGACAAACTTCCCAACAGCCAGCTACAACATCAAGATGCCAAGCTTGTCAAGGGGGCGATGGCCGCCACATACTCAGCACTAAAGAGTTCCCAACCACCCCCTGAGCTGAAGCCCATCGAGTCCTCATTTCTGGCGCAGAGACGGGTGAAAAAGCTTCCTTCCACATCTCTGTAGAGACCGAGGGAAGGAGACGTGAAGAACTCCAGACTGAATGCAGTTGTGGAAAGGATGGATGTATGAAAGAACCACACTGAAGCTCTACAGACTAAAGACGGTCTCTTGAACCTGCCCATGACATCAGCACTGCAGTGGAGCTGTCAAGCAAGCTAGGCAAGGGTGGTGATTGGCTGATGAAGTTTGAGGGGCGTGGCCAGTGAGGATTCCGTTCTCCCTTAGAAGTaggggtgtgtgtttgtgtgtgcgtgcgtatgagagagagaaagagagagagaattcaaAAAACCGGGTAAAggataatgttataaaatagaTGATATTCCCAGTGCATTTGTCTTGGTACTGTAATACCTAAATATCAACACTGCTgaatttttgttagttttgcattttgtaaattcttttttttttttacctctatAGTTTGTTCAACTGGATTTCATGTTTGATCTGTCTTTTCAGCTGTTCTGCTTCCCATTGTCGAGTAGATCTCTCTTAGTCAGTCTTTTACTAAAAGCTCAAAGCGGCCTTTAGTGAGAATCAGAGATGATCCGGTATAATATTTCACCCACATGGTCGAGTAAAGGTTAAATATATCTTCCATAATGATCCTCTGAGCATGTTCACACGACTAAACATAGTCATAGACTAAACATAACCTAAACATAGTGGAGAATGGAAGTGCTTTCTGCATGGATTTGTACAATGctgtcttgtttctttcttgttttcccCAACCCGGCACTTTTGCTTGGTGAACCTGTCAGCACTGGTGAGGACTGTTCAGAAAATGTCTTCTCGTGTGTTTATTAAAgtaaagaatgaaaaaagtgtGTACGTGAGATGACATCTGAAGCTTGTGGCATGGAAAAATGTTGCTCTTGTTAGATCAGTGCTTTTTTTGGATATTGACTGCTGTCTCCTGTGCTTTGattttgatgttgttgtttttttttgcttaaagaGAAGTTATTTTATAAAGGCACATTGAGCACAAACGTGTATAAATATGACAGCTGAggaaatgatttaatgattgtgtatatttttactcCTTGTTCTCCCGGCATTCAGATGCCTAGTGTGGTTGGAACTATCAACTTTATTGTGCTCAGGCTGTTCTTAGCGATGCCTTGCAAATTCATGAAGCCTTGTCTTGCAAGTATTGCACCCTTATCCAGTCAAACGCATCTTCAAAGTTTTAGGATGTGCTTGGagtgttgttttgcttttcccTTTCCACAATTCTTGaattaaaaattctgaaaaagtcAGTGCTCTGACATAAAGAATTAGAAAAGCACCTATTTTTGATTGTGTTTGACTATTAAAATGAAGAGTTTTACTAGTAATAgctcactccaaaatgaaaattgtaatttactcaccctcgtgtctttccaaacctgcatTGTAAGACTGTCTTTATTCCACAGAAAATATCATGTCCAACCTATATTTTTAGGACCAAGAATTCACTTAAGAATTCATCCAACTGGAAAGAATATCATGGCCATTCTACTATAAATAGAACGTTACACAGGTTTGGAATTGCACTGAAATGCACagaatattcattcattattcctttaaatctttcagtcactttaaaaaaaaaacgtaactgGAACAGAATTTGGAATTGtctaaagtattaaaaataaaaaaacgtaggCCTA

Function

NR:

description
PREDICTED: ribosomal protein S6 kinase alpha-1 isoform X1

GO: NA

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239546.1 True 4077 mRNA 0.44 20 27001647 27014498

Neighbor

gene id symbol gene type direction distance location
LOC122345425 rps6ka4,LOC107758164,LOC107698546,LOC107567284,LOC107702937,LOC108427766 coding downstream 387 26997549 ~ 27001260 (-)
unga ung,unga,LOC107712535,LOC107687060,LOC107560323,LOC107752258,LOC107702903 coding downstream 99973 26897463 ~ 26901674 (-)
LOC122345160 mlxip,LOC107687059,LOC107712534,LOC107560310,LOC107702943 coding downstream 104425 26884570 ~ 26897222 (-)
rsrc2 LOC107740083,LOC107674791,LOC107752237,LOC107702941,LOC107571524 coding downstream 132053 26863405 ~ 26869594 (-)
zcchc8 zcchc8,LOC107674788,LOC107740086,LOC107752243,LOC107560308 coding downstream 141768 26854036 ~ 26859879 (-)
LOC122345424 klhl34,LOC107586735,LOC107671349,LOC107705277,LOC107721877,LOC107663667,LOC107590345 coding upstream 80882 27095380 ~ 27099719 (-)
LOC122344788 LOC107548517,LOC107662059 coding upstream 153767 27168265 ~ 27172894 (-)
spaw LOC107548501,LOC107662086,LOC107740019 coding upstream 262549 27277047 ~ 27280391 (-)
usp39 usp39,LOC107662055,LOC107739996,LOC107702962,LOC107722749 coding upstream 273674 27288172 ~ 27293486 (-)
mat2ab mat2ab,LOC107548521,LOC107662054,LOC107739995,LOC107556049,LOC107722750,LOC107702964,LOC106580346 coding upstream 287761 27302259 ~ 27308208 (-)
G39712 NA non-coding downstream 118472 26876590 ~ 26883175 (-)
LOC122344941 NA non-coding downstream 627825 26372619 ~ 26373822 (-)
G39585 NA non-coding downstream 847944 26153465 ~ 26153703 (-)
G39579 NA non-coding downstream 882564 26118474 ~ 26119083 (-)
G39574 NA non-coding downstream 1218056 25782979 ~ 25783591 (-)
G39738 LOC107705276,LOC107586737,LOC107671348,LOC107663665,LOC107721875 non-coding upstream 67503 27082001 ~ 27084786 (-)
LOC122344810 LOC107662059,LOC107548517 non-coding upstream 101469 27115967 ~ 27146962 (-)
LOC122344809 LOC107671984 non-coding upstream 112631 27127129 ~ 27128456 (-)
LOC122344808 LOC107671984 non-coding upstream 125917 27140415 ~ 27142658 (-)
G39857 NA non-coding upstream 174352 27188850 ~ 27189222 (-)
LOC122344921 NA other downstream 1432961 25561974 ~ 25568686 (-)
G39413 LOC102215562 other downstream 1719361 25281886 ~ 25282286 (-)
LOC122345923 NA other downstream 2242979 24754202 ~ 24758668 (-)
naa38 naa38 other downstream 2253037 24746672 ~ 24748610 (-)
anapc2 anapc2,LOC107559737,LOC107730340,LOC107746468,LOC107683706,LOC107595991,LOC107684355 other downstream 2407531 24587724 ~ 24594116 (-)
LOC122345426 smpx,LOC107705278,LOC107671350,LOC107590224,LOC107663668,LOC107586736,LOC107721880 other upstream 85317 27099815 ~ 27107385 (-)
isca1 isca1,LOC107702919,LOC107662049 other upstream 368423 27382921 ~ 27398741 (-)
LOC122344874 NA other upstream 871543 27886041 ~ 27895454 (-)
G40080 pappaa,pappa,LOC107556005,LOC107558864,LOC107739977,LOC107675511,LOC107728218 other upstream 1241330 28255828 ~ 28264704 (-)
LOC122345120 LOC107728794,LOC107696375,LOC107590009,LOC107739482 other upstream 2309484 29323982 ~ 29326115 (-)

Expression


Co-expression Network