si:dkey-1k23.3 (LOC107560961,LOC107656799,LOC107702214,LOC107755870)


Basic Information

Item Value
gene id si:dkey-1k23.3
gene name LOC107560961,LOC107656799,LOC107702214,LOC107755870
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3619178 ~ 3622404 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239572.1
TTTTTTTCGCTATGGCGGATGCTATCGAGTCTCCATCCAGGCCTCAGTATTGTCATGATGTGTTCTGGAGTCCCCTGAGCTGCAGATGGCCCAGTGTAATCTTTAACCAGCATTACGGCCTGCCTCCGTTATTGGACCCTCAAGACCTCAGCTGGGTGGAAGGCGTCTTCAGAAGGCTGGGGACGTCGTCTTGGCCCGGGTACTTGCGCACACCCGCGTTCGCTCAGGCCCCGGGACGGCACATGTCTAAGCTGAGGCGGGAGATGAGCGGAGGGGTGTCGGAGGTGGTTGGTGAGATGTGCAAGTGGAAAATTAGCTTGGACGTCAATCACTTCGCTCCCTCTGAGATCAGTGTCAAGATACAGGATGGACTTTTAGTAGTTGGAGGAAAGCATGAGGAAAGGCAAGATGAGCATGGCTACATTACTagatgttttacaagaaaatacactcttCCGGGTGGCGTTGAGGCTGAAAGTCTCCAGTCGCGTCTGTCCGCCGATGGGATTCTTACAGTGGAAGCACCATTACCCAGCATTCCCCTCCCCTCTGATGTCGATATCCCCATTCAGGTGGAGGAAACCACTGGAGGAAAACAACAAGAGGAGCTTCAAACCGGCGTCGAAGCTGAGGCCAAACCAGGATCGTTTGAAGGGGAAACTGTCTCGACTGAGCCTCCCGAACCAGACCAGCAGACTGTATCTGAGGTAGATCCATCTACGGAGCCACAACCGCAGTCCATCTCAGAAGCTACCGCTGCGTCTGGAAGAGAGCGGGTCGGCGAACCCGGAGAAGAGGACAAAGAAGCTGCTTTTCAAGAGACAACTGAGGGCACCGAGCGAGACGAAGACAAGCCTCAGGCCCCAGAGACTCCAGACACCATCACCCCGGAGCAAGGAGAGCAGGCAGAGGTCACGCAGCCTCGAGAACTGGAGGGCGAAGAGGGATATACAGACCCTGCTGTGACAGAAGATGAGCAATCAACCTTCGGGCAAACCCAAGAGCCGTTCGTCCCTCAGCAGGTGCTCCAAAAGGAGATGGATGTAGGCAAAATGTAGGCTGCAAGATAGCAACACCCCAGCTCTTTCCTCAGCCTTCGAATTTACTGTAACATGCATCTTCTTAGCACTAATAAAGACCTGAGCATGATTGTGTGAAGCTTCTTGTTGTGCTTTACAACAACGCGACCGATTAATCAGAGAAAGCTGAGAAGTGATTCTAACTAAAAGTGACAGATGGAGATTGTGGGACCTAGCTGACTTCTCGCTTGCAGAGAATGTTATATGCTTGCACATTACATCCCTCGAGTAGTAAATATCATATAATTCTCTTCTAACTCGGATGGTTATGATTCCAGCACCTCTTTATATCGGTGATTCATTAACCTCAAACCCTGAAAATTACGCGTCGCGAGAGCGTGGATCGATTTGAGGAGAAAAATCCGATGGGCAAACACATCGGTTAATCAGTGGAGTACcgtttttttcaatattttctctCCGCGTCCTCGTCGAGGAGATTGAAAGCGAGCCAAAGCGTTCGGAATAATCTCCACACTAATCTGTCACCCAATTACCGCCACCGTGCAGAGACAACTCCCATGGAGTCGCTCCCATAAGCACACAGCCAATCTGCCAAGAGAACACCCAGATGTGATAGAGGACAGAGCACTGAGAAACCGAGGAAAGCGTGATGCTCGATTTATTACTCCACGGCATCAGGAGGTTA

Function

NR:

description
PREDICTED: retinitis pigmentosa 1-like 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239572.1 True 1728 mRNA 0.51 4 3619178 3622404

Neighbor

gene id symbol gene type direction distance location
taok3a taok3,taok3a,LOC107699916,LOC107697236,LOC107708246 coding downstream 124985 3422884 ~ 3494193 (-)
txnrd2.2 txnrd2 coding downstream 201437 3390994 ~ 3417741 (-)
gnb1l gnb1l,LOC107708243,LOC107755863,LOC107551810 coding downstream 242652 3343559 ~ 3376526 (-)
LOC122345463 sema4c,LOC107699920,LOC107697240 coding downstream 529656 3022849 ~ 3089522 (-)
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding downstream 708796 2876309 ~ 2910382 (-)
xbp1 xbp1 coding upstream 37300 3659704 ~ 3662910 (-)
kremen1 kremen1,LOC107656811,LOC107561268,LOC107560966,LOC107702222 coding upstream 131575 3753979 ~ 3809696 (-)
susd2 LOC107656804,LOC107561267,LOC107702221,LOC107707826,LOC107560963 coding upstream 199714 3822118 ~ 3847170 (-)
slc39a14 slc39a14,LOC107656812,LOC107560970,LOC107561269,LOC107702220,LOC107707824 coding upstream 227089 3849493 ~ 3873889 (-)
LOC122345410 hspb8,LOC107720866,LOC107561261 coding upstream 515127 4137531 ~ 4141903 (-)
G33114 NA non-coding downstream 124 3617937 ~ 3619054 (-)
G33008 NA non-coding downstream 228799 3388284 ~ 3390379 (-)
G32998 NA non-coding downstream 275938 3340599 ~ 3343240 (-)
G32999 NA non-coding downstream 291937 3293606 ~ 3327241 (-)
G32922 NA non-coding downstream 442929 3175719 ~ 3176249 (-)
G33124 NA non-coding upstream 26062 3648466 ~ 3652888 (-)
G33140 htr7c,LOC107755817,LOC107707833,LOC107656814,LOC107561270,LOC107702213,LOC107560967 non-coding upstream 276187 3898591 ~ 3904546 (-)
LOC122345413 NA non-coding upstream 345452 3967856 ~ 3968964 (-)
LOC122345411 NA non-coding upstream 428378 4050782 ~ 4051472 (-)
G33300 NA non-coding upstream 1237595 4859999 ~ 4902402 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 606359 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 659001 2951462 ~ 2960177 (-)
add2 add2,LOC107668755 other downstream 1013261 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 1033726 2580548 ~ 2585452 (-)
G32857 NA other downstream 1065032 2496504 ~ 2554146 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 122271 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 256246 3878650 ~ 3898578 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 522452 4144856 ~ 4193081 (-)
G33175 NA other upstream 1000086 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 3201767 6824171 ~ 6826182 (-)

Expression


Co-expression Network