hspb8 (hspb8,LOC107720866)


Basic Information

Item Value
gene id hspb8
gene name hspb8,LOC107720866
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3610472 ~ 3619055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239573.1
GGTCCTCGGTCAGCTGTCGTGAGCCTCCGAGCACTTTCTGGACTTTGTAGACCGGTAAATCACATATAAACCAGTGGAACGAGTTTACATCGTCAGTAAACTTCTAGGAGCCTTACGTGCGCGCGGTATTACGCGTAAACTTGGGTGCGTAATTAAGCGACTTTTTCAAACTGCGTTCTTTTTCATTCGTTTTGAACGAAAAAGTCACTTTTTTCCCAGTTTCACGATGGCAGAGGGGGATTACTACACTATGGGCAACCGGCAGAGGATTCCGAGGGATCCGTTTCGCGAACAGTCGCTCTCATCTCGATTCATGGACGATGACTTTGGACTGCCGCCTTTTCACGACGAGTTATCTATGGACTGGCCCGGCTGGGCGCGACCTCGACTGAGCGCCCGCCTTGACGCGCCGTGGACGGGCCCCTTGCGCTCGGGCTTCCCGCGGGGCTTCAGCGCCAGATACGGCGAGGGTCCGCGCAGAGCCAGCGCTCCTCCGTGCAACCCGGACGAGCCGTGGAAAGTGTGCGTGAACGTGCACAGCTTCAGACCCGACGAGCTTAATGTCAAAACTAAAGACGGTTTTGTAGAGGTGTCAGGGAAGCACGAGGAAAAGCAGGACGAGGGAGGAATCGTCACCAAAAACTTCACGAAGAAAATTCAAATCCCGTCCGACGTGGACCCTCTCACTGTGTTTGCCTCTCTGTCACCGGAAGGGGTCCTCATCATTGAAGCCCGGCAGACCCCTCCGTATTACCTCTACAGCAATGAAATGCCCGCAGAACCCATGGAAGAACCCGAGGCCAGACCTCAGGAACCCAGTATGGCTTCAGCCGAAGTCTTCGCAGCCAGGGAGTGAAAGCGAGTTTACATGCCCTTAGTATTTGTTCCAAGCCAGTGCCAAAGTTTCAGAAATTTACTTAATTCAAAAGTCATTAATCTGCTAGGGAGTAGTCCATAAATCAAACGTGTATATGGTACACGGTTGGATCAAATGCCAGTATCTTTCATTTACTACGTCAGTGAAGAAAAATGATGGAAATAAAGGGAAAGATACCGAAATCAGATGAAACCGCGGTCATGAACATACTCTACGCGAGTACAGAAATGCGAAAGCATTGTTAAACATTGCAATGGCAAATCTCAGTCCTCAAGGGGGCGATAAAGCTCCCTTCAAgcagtttaaagggatagtttacccaaaaataaactcATCATTTATTATCTCGTTCCAAACATTAACGTCTGTATTGCCTCTAtggaacacaaaatatttttgcccataaaagtgtcgATATAATCCAATGTTTGAGTTTGACTGTATGAACAAAATAGTAGCGAccttcaaacattttttaaatatcatctcgttgtacaggtttggaacagcgcAAGATTTAACTAACGTCTATCTCACCCTCCAGTTAAGTTCTCTTCAAACTGCTTCACATTAATCTGATCAAATAGAAGACAACACTGACAATGCAATGCATGCTTGTGTTGCAACGTGAATTGCTTTGAGACACAAAATGTTCTCATAGTTGAGTATGTTCGGACTCTCTGTCCCTCATATAAACCTAAACTTGTCTGGGTTAAATGGAAGTGCTGTTTTAATCATCCGAGTACTCGTCACGTTGGACTATTTATATGGCTGTAAATGCTGGAGCTCTTTCTCAAAGGCtgttcattgtttttcttttcttattcgtgtgcgtttttttctttttgtgtagGAATGTATGCTAtgcttttttataataaacgaCCAATCACGAAA
>XM_043239575.1
GGGGAGGGTCCTCGGTCAGCTGTCGTGAGCCTCCGAGCACTTTCTGGACTTTGTAGACCGGTAAATCACATATAAACCAGTGGAACGAGTTTACATCGTCAGTAAACTTCTAGGAGCCTTACGTGCGCGCGGTATTACGCGTAAACTTGGTTTCACGATGGCAGAGGGGGATTACTACACTATGGGCAACCGGCAGAGGATTCCGAGGGATCCGTTTCGCGAACAGTCGCTCTCATCTCGATTCATGGACGATGACTTTGGACTGCCGCCTTTTCACGACGAGTTATCTATGGACTGGCCCGGCTGGGCGCGACCTCGACTGAGCGCCCGCCTTGACGCGCCGTGGACGGGCCCCTTGCGCTCGGGCTTCCCGCGGGGCTTCAGCGCCAGATACGGCGAGGGTCCGCGCAGAGCCAGCGCTCCTCCGTGCAACCCGGACGAGCCGTGGAAAGTGTGCGTGAACGTGCACAGCTTCAGACCCGACGAGCTTAATGTCAAAACTAAAGACGGTTTTGTAGAGGTGTCAGGGAAGCACGAGGAAAAGCAGGACGAGGGAGGAATCGTCACCAAAAACTTCACGAAGAAAATTCAAATCCCGTCCGACGTGGACCCTCTCACTGTGTTTGCCTCTCTGTCACCGGAAGGGGTCCTCATCATTGAAGCCCGGCAGACCCCTCCGTATTACCTCTACAGCAATGAAATGCCCGCAGAACCCATGGAAGAACCCGAGGCCAGACCTCAGGAACCCAGTATGGCTTCAGCCGAAGTCTTCGCAGCCAGGGAGTGAAAGCGAGTTTACATGCCCTTAGTATTTGTTCCAAGCCAGTGCCAAAGTTTCAGAAATTTACTTAATTCAAAAGTCATTAATCTGCTAGGGAGTAGTCCATAAATCAAACGTGTATATGGTACACGGTTGGATCAAATGCCAGTATCTTTCATTTACTACGTCAGTGAAGAAAAATGATGGAAATAAAGGGAAAGATACCGAAATCAGATGAAACCGCGGTCATGAACATACTCTACGCGAGTACAGAAATGCGAAAGCATTGTTAAACATTGCAATGGCAAATCTCAGTCCTCAAGGGGGCGATAAAGCTCCCTTCAAgcagtttaaagggatagtttacccaaaaataaactcATCATTTATTATCTCGTTCCAAACATTAACGTCTGTATTGCCTCTAtggaacacaaaatatttttgcccataaaagtgtcgATATAATCCAATGTTTGAGTTTGACTGTATGAACAAAATAGTAGCGAccttcaaacattttttaaatatcatctcgttgtacaggtttggaacagcgcAAGATTTAACTAACGTCTATCTCACCCTCCAGTTAAGTTCTCTTCAAACTGCTTCACATTAATCTGATCAAATAGAAGACAACACTGACAATGCAATGCATGCTTGTGTTGCAACGTGAATTGCTTTGAGACACAAAATGTTCTCATAGTTGAGTATGTTCGGACTCTCTGTCCCTCATATAAACCTAAACTTGTCTGGGTTAAATGGAAGTGCTGTTTTAATCATCCGAGTACTCGTCACGTTGGACTATTTATATGGCTGTAAATGCTGGAGCTCTTTCTCAAAGGCtgttcattgtttttcttttcttattcgtgtgcgtttttttctttttgtgtagGAATGTATGCTAtgcttttttataataaacgaCCAATCACGAAA

Function

symbol description
hspb8 Predicted to enable protein homodimerization activity. Predicted to be involved in cellular response to unfolded protein. Predicted to be part of chaperone complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including cephalic musculature; immature eye; midbrain hindbrain boundary neural rod; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2L and distal hereditary motor neuronopathy type 2A. Orthologous to human HSPB8 (heat shock protein family B (small) member 8).

NR:

description
PREDICTED: heat shock protein beta-8

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K08879 HSPB8; heat shock protein beta-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239573.1 True 1774 mRNA 0.46 3 3610478 3619055
XM_043239575.1 False 1705 mRNA 0.46 4 3610472 3619055

Neighbor

gene id symbol gene type direction distance location
suds3 suds3,LOC107569732,LOC107708245 coding upstream 105269 3497249 ~ 3505203 (+)
pebp1 pebp1 coding upstream 188328 3417904 ~ 3422144 (+)
hk2 hk2,LOC107668748,LOC107755855,LOC106585103,LOC108255852,LOC108411364,LOC107708252,LOC107599625 coding upstream 798052 2759355 ~ 2812420 (+)
LOC122345789 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 coding upstream 885048 2717013 ~ 2725424 (+)
LOC122345384 H2AFV,h2afvb,LOC107386217,LOC105007341,LOC107668744 coding upstream 1078879 2528502 ~ 2531593 (+)
LOC122345442 NA coding downstream 4087 3623142 ~ 3650703 (+)
znrf3 znrf3,LOC107707852,LOC107656810,LOC107560969,LOC107755873,LOC107702225 coding downstream 58533 3677588 ~ 3747908 (+)
LOC122345408 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding downstream 284923 3903978 ~ 3940975 (+)
LOC122344976 htr7c,LOC107707833,LOC107656814,LOC107561270,LOC107560967,LOC102292089 coding downstream 756748 4375803 ~ 4409270 (+)
chfr chfr,LOC107656818,LOC107548943,LOC107600128,LOC107672629 coding downstream 1294274 4913329 ~ 4928533 (+)
G32992 NA non-coding upstream 103762 3505648 ~ 3506710 (+)
G32956 NA non-coding upstream 220985 3388301 ~ 3389487 (+)
G32955 NA non-coding upstream 222744 3387494 ~ 3387728 (+)
G32934 NA non-coding upstream 316914 3293274 ~ 3293558 (+)
LOC122345883 NA non-coding upstream 423950 3180809 ~ 3186522 (+)
LOC122346010 NA non-coding downstream 32354 3651409 ~ 3652844 (+)
G33018 xbp1 non-coding downstream 40812 3659867 ~ 3662929 (+)
LOC122345412 NA non-coding downstream 637123 4256178 ~ 4282937 (+)
G33077 NA non-coding downstream 709143 4328198 ~ 4329596 (+)
G33079 NA non-coding downstream 717317 4336372 ~ 4337998 (+)
tbx1 tbx1,LOC107755862,LOC107699917,LOC107708247 other upstream 267402 3328800 ~ 3343070 (+)
LOC122345783 npffr1l2,LOC107755826,LOC107599640,LOC107668729,LOC107708240,LOC107654224 other upstream 961111 2627084 ~ 2649361 (+)
G32706 LOC107560224,LOC107681222,LOC107709689,LOC107690695,LOC107757958,LOC107587469 other upstream 1342278 2265145 ~ 2268194 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other upstream 1591322 2010217 ~ 2019150 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other upstream 1704973 1900627 ~ 1905499 (+)
G33174 NA other downstream 1003452 4622507 ~ 4623060 (+)
fbrsl1 LOC107656817,LOC107600129 other downstream 1025046 4644101 ~ 4902403 (+)
G33355 kctd10,LOC107595924,LOC106564472,LOC107672630,LOC107597295,LOC107752136 other downstream 1985278 5604333 ~ 5649885 (+)
myo1ha myo1ha,myo1h,LOC106585663 other downstream 2006212 5625267 ~ 5648047 (+)
tnpo1 tnpo1,LOC107700926,LOC107655929,LOC107596175 other downstream 2340777 5959832 ~ 5982816 (+)

Expression


Co-expression Network