cds1 (cds1,LOC107602031,LOC107663388,LOC107744867)


Basic Information

Item Value
gene id cds1
gene name cds1,LOC107602031,LOC107663388,LOC107744867
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14795349 ~ 14810245 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239588.1
gcgagagagagagagaaagggagagagggaaagagagagagagagagagagagaggttggTCTCTGACTTAACTAAGAAAACAGCAGCAGATCTGCGGGCATAAACAAATGCACGCAGCCTGTCTGTTCCTCCACCTGCCGCGGGAGACACTTCGATGGTCGCAGTAGGTTAAATTAACCGGATTACCGAGACGGACGCGAAAACCCCTGCTCTGCTTTATTTTAACGTGGACCTGCGACGATATCTATGCATTATTTAGATTGAAATAAGTCCAAAATGACGGAGCTGAGAcggcgaggaggaggaggagacccCGACAGCACTGAAAACATCAGTGACAAGGAGGCAGATGGAGAAGACAAGCTCGCTTTTCCCGGTGAAGGGGAAGGAGAAATGGAGGGCGACTCCAAAGCGGACACGCCAGACGCGCCACCTTCCACAGATAACACTCCACAGTGTCTCAACAAAGCCCTGGAGGGCTTGTCATCTAGGTGGAAGAACTGGTGGATAAGAGGCATATTGTCATTGACAATGATCATTGGCTTCTTTCTTATCATCTATTTGGGACCCATTATGCTTATATTAGTGgtaaTGGGTGTTCAGATCAAGTGTTTTCATGAAATTATAACCATTGGCTACAGAGTTTACCATTCCTATGAACTGCCATGGTTTAGGACTCTTAGCTGGTACTTCTTGATTTGTGTGAACTACTTCTTTTATGGTGAGACAGTGGCTGATTATTTCGTCGCGCTCGTCCAAAGGGAGGAACCTTTGCAGTTCCTTGTGCGTTATCATCggtttatttcttttgcactGTATTTGGCAGGTTTCTGCATGTTTGTACTGAGTTTAGTGAAGAAACATTACCGCCTGCAGTTTTATATGTTTGCTTGGACCCATGTGACCTTGTTGATTGTGGTGACTCAGTCACATCTGGTTATTCAGAACCTGTTTGAGGGAATGATCTGGTTTATTGTTCCCATCTCTATTGTGATCTGTAACGACATCATGGCCTACCTATTTGGCTTCTTTTTTGGAAGAACTCCACTGATTAAGCTCTcccccaaaaaaacatgggAAGGATTCATTGGGGGATTCTTTGCAACAGTGGTCTTTAGTTTCTTTTTTGCGTACCTGCTATCCCAGTACCAGTACTTTGTTTGTCCAGTGGAATACAACAGTGAGACAAACCGCTTTGCAGTGGAGTGTGAGCCATCAAATCTCTTCATGATACAGGAATACACACTTCCTGCAGTGCTGCAGAATGCTCTCAGATGGaaaaCGGTGAACCTTTACCCATTTCAGATCCACAGTATTGCGCTCTCTACATTCGCCTCTCTGATCGGACCGTTTGGTGGATTCTTTGCCAGTGGCTTCAAACGAGCTTTCAAGATAAAAgactTTGCAGACACCATTCCTGGTCATGGTGGAATAATGGATCGTTTTGACTGTCAGTATCTGATGGCAACGTTCGTTCATGTTTACATAGCAAGTTTTATCAGggGACCGAACCCCAGTAAGGTTTTACAGCAGTTGCTTGTCCTGCAACCAGAGCAGCAGCTCAACATTTTCAATACGCTGCGTAACCACTTACGAGAAAAGGGCATGCTGCCCTCTGCTGTGGAGGAAGCCCAATGACAGACGTCTTCAGCTCATGTCCTGTTGAACTCAGTAAGCGTTCACCCATGACTGTGATGACAAGAGCACACTCCCAACCGACCACAGGAGATCCCCCTTCAGTGAGAGAGTGACACCCGCTGCAAACCAAACTCTCACTTTTAACCCATTAGAAGAAACTCAGCAAACGAAGGCGCAAAACGACCACAAGGGGGCGCGACACGGTTCTCTTAACATCAGAGGTCTTCCAATCAACAaccatgcaaaataaaagattcaAGCACATGGTAAGTGAATGTATAGCACTACAGGAAGGGCGCTTCAGCGGAGGGATTTTGTGAATCTGGCCTGGTTTGCAACATCGGTAACTCATGGTGGTGACTTTAGGTTTTTGAAATGCCATAATTCTCGTGGTTAACGTTTAAATGTGAGCTTAATTTATAAAGGGGGTCCTAAACTTAAAGCATTACAAAACAGTGAGTCTAAAACAGAAGCATGTCTGTAAGTCCTACTGTTACTGCTTGAAATAGCCATGTTCTCTTTTCCCATTACTCTGTGTGTTTGCGTGAGCGCTAAATTAACTCACGCGTGTGTACATATCATCATAGGTATTATTGCACATAGATATTATACATTAGAtcaaatagagagagagattatacatttattaatataatatataaggcTTAAGAAATTCTATAAAATAGTAAGTTATGAAAATGATATGCAAAAAGACTAGTCTTATTTTCTTAAATCTAGCATGACTAAACCTCTCTAGGGGTGGCTAATAATTGAGAGGGTTGTTTTCGGAGGAGAAACAGCCTTTTTGAGAAGGCGACCGTGACCATTGGTTTTAGTTGCACTGTAACTACACGAGTCGAAAGATTCAATTAGCTTTTCAGGTTTTAGTATCAAAACAACACTGGTGCTTTGAGTAGATATCCGATATTTGAAAACATGTTCTTagatttaatgtgcttttttttatatttcatttttttttttacagtatcctccctgaaatattgttttagctgctcttgtttttaaaacctttttttttttttttttatttgttgaaagtTTTCTGAATACTTTACCAAACAAATGTGTACCAAAGCACTGTCTATTttgctgtgaaaaaaacaaaacaaaactcaatATCACACCGCAATTAACGTCATCAAACGCTACAGTCTTACGGTAGAGAACAATCCTACAACAGACCGAACaaattacatgtttatttaagcACTTACATGAACAAAAGTAACACTGCTACAGATTATTATCGTAACTTGataatagtttaaaaagtgGATTTGAAATAACCCCTGATTACACATCGGGACTCAGTCGTGTAGTTTGGGACCAGTTGTCAATAgtgttgtaaaacaaaaaaaaaacaaaaaggcaaatGTGACCCCTTACCTTGTTCATTCCTGTTTGCAATAGGTTTACATGTTCCTTTCCTTCACATCTGCTGTCCAGTAGATGCAGTCATGTGAGATTGTTGTGTTTGTAGTAATTAATATGAATCCTATCAGACCAAAAAGAGAATGCACCTCCAGTCGTCTATAGCTTATTTTGTGGATGTCACAATTGTATTAGCAATTTAGTTTCTTGAGAGCTGCTGTACAATATAAGTTATAATGTTACCCAACATATAATACTGTGCAAGCTTATACTGTTCAGAAGTTTAGTTATAAATGGGTTTCAAATTACTTGCTTATCACGGTTTgttattcatgtttaaaaaaaaatgggaaccttttatttatgtttgattttcagattttttttttaaaggttttagtAGTAAATATTTaccagaagaaaaaagaaagtaataagTTACGGGCAACAATAGgggtaattattattattattattattattattattgtcattactATTGCAATGCTTCACTTGGTGAATAAACTTCACTTTTGACTTA

Function

symbol description
cds1 Predicted to enable phosphatidate cytidylyltransferase activity. Acts upstream of or within angiogenesis and positive regulation of ERK1 and ERK2 cascade. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human CDS1 (CDP-diacylglycerol synthase 1).

NR:

description
PREDICTED: phosphatidate cytidylyltransferase 2

GO: NA

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239588.1 True 3575 mRNA 0.40 13 14795349 14810245

Neighbor

gene id symbol gene type direction distance location
rasgef1ba rasgef1ba,rasgef1b,LOC107599189,LOC107663389,LOC107744864,LOC107746854 coding downstream 17090 14718524 ~ 14778259 (-)
prkg2 prkg2,LOC107746786,LOC107599184,LOC107744862,LOC107602032 coding downstream 78019 14706377 ~ 14717330 (-)
antxr2a antxr2,antxr2a,LOC107663391,LOC107746853,LOC107661223,LOC107602005,LOC107744869 coding downstream 178471 14573555 ~ 14616878 (-)
paqr3a paqr3a,paqr3,LOC107661222,LOC107567467,LOC107599192,LOC107663396 coding downstream 294777 14493589 ~ 14500572 (-)
cnot6l cnot6l,LOC107752360,LOC107663397,LOC107567468,LOC107746779 coding downstream 448669 14334218 ~ 14346680 (-)
wdfy3 wdfy3,LOC107681281 coding upstream 2312 14812557 ~ 14875477 (-)
si:dkey-193c22.1 si:dkey-193c22.1,LOC107661268,LOC107602027,LOC107599182,LOC107744872,LOC107746871,LOC107736603 coding upstream 65777 14876022 ~ 14880073 (-)
snx18a snx18,snx18a,LOC107599175,LOC107661231,LOC107746794,LOC107744868,LOC107602026 coding upstream 96339 14906584 ~ 14917764 (-)
hspb3 hspb3,LOC107746796,LOC107599178,LOC107744878,LOC107602000 coding upstream 108681 14918926 ~ 14919939 (-)
fsta fst,fsta,LOC107746798,LOC107599173,LOC107708632,LOC107602023,LOC107661233 coding upstream 206654 15016899 ~ 15023456 (-)
G36696 NA non-coding downstream 96396 14698736 ~ 14698953 (-)
G36631 NA non-coding downstream 142956 14652095 ~ 14652393 (-)
G36602 NA non-coding downstream 306621 14485814 ~ 14488728 (-)
LOC122344807 NA non-coding downstream 327572 14464304 ~ 14467777 (-)
G36567 NA non-coding downstream 445413 14349108 ~ 14349936 (-)
G36708 NA non-coding upstream 70620 14880865 ~ 14881065 (-)
G36714 NA non-coding upstream 95140 14905385 ~ 14905621 (-)
G36811 NA non-coding upstream 358802 15169047 ~ 15169358 (-)
G36967 NA non-coding upstream 751477 15561722 ~ 15562078 (-)
G36968 NA non-coding upstream 751903 15562148 ~ 15562363 (-)
LOC122345141 LOC107752369,LOC107661250,LOC107567461 other downstream 492968 14292063 ~ 14302381 (-)
znhit1 znhit1,LOC107752359,LOC107661214,LOC106567874 other downstream 512729 14279674 ~ 14282620 (-)
rnf214 LOC107663407,LOC107746393,LOC107599207,LOC107596114,LOC107734124,LOC107661199,LOC107599223 other downstream 738644 14040982 ~ 14056705 (-)
tmprss13b LOC107746439,LOC107663381,LOC107599230 other downstream 785813 14001934 ~ 14009536 (-)
LOC122345901 NA other downstream 947279 13845403 ~ 13848070 (-)
pdzd2 pdzd2,LOC107746802,LOC107681406,LOC107661237 other upstream 395706 15205951 ~ 15264945 (-)
zfr zfr,LOC107746805,LOC107681158,LOC107552600,LOC107602019 other upstream 483611 15293856 ~ 15308440 (-)
npr3 LOC107681138,LOC107746807,LOC107552598,LOC107602007,LOC107708637,LOC107661273 other upstream 539771 15350016 ~ 15367413 (-)
alkbh2 alkbh2,LOC107746816,LOC107552593,LOC107676640 other upstream 757774 15568019 ~ 15578967 (-)
cenpv cenpv,LOC107718355,LOC107676655,LOC107746825,LOC107680877,LOC107553589,LOC107552586 other upstream 893288 15703533 ~ 15709430 (-)

Expression


Co-expression Network