cds2 (cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217)


Basic Information

Item Value
gene id cds2
gene name cds2,LOC107597267,LOC107654641,LOC107741205,LOC107663217
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12396282 ~ 12409668 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239593.1
TTTCCCGTCCCAATAACAATCATTGAAAACGAACAGCAACCCCCGAAGATTGTTACTTCATCGGGCCTTTATTTTCAACAAATCGAGTCGACCATGACAGAATTACGCCACCGAGGAGCGACGGATAAAGAACTGCAGCATCAGAACTCGGAGGATAAGGGCTCTGAAACAGAGGGCAAGGAGAGAGATGGAGCCTCAGACAATGAGACCAAATCAGACTCTGGGGTTCCTGAGGTTCCCGTTTCTGCCGATGACACACCAGAGGTTCTCAACAAAGCCCTCTCTGGACTTTCCTCACGATGGAAGAACTGGTGGGTGAGGGGCATCCTCACGCTGGCTATGATCTCCTTCttctttatcattatttaccTGGGCCCGATGGTGCTGATGATGATTGTGTTGTGTGTTCAGATCAAGTGCTTCCATGAGATCATCACAATTGGTTACAGCGTGTATCACTCTTACCACCTGCCCTGGTTCAGAACACTAAGCTGGTACTTCCTGTTGTGCGTGAACTACTTCTTCTATGGTGAAACGGTAACAGACTATTTCTTCACACTGGTGCAGAGGGAGGAGCCTCTACGCATCCTCAGCAAATACCACCGCTTCATTTCCTTTGCCCTGTACCTCACAGggTTCTGCATGTTTGTTCTGAGCCTGGTGAAAAAGCACTACCGCCTACAGTTCTACatgTTCGGCTGGACCCATGTGACCTTGCTTATTGTGGTGACTCAGTCCCACTTAATCATTCATAACCTGTTTGAGGGGATGATCTGGTTTATTGTGCCCATCTCCTGTGTTATCTGTAATGACATCATGGCTTACATGTTTGGCTTCTTTTTCGTCGCACCCCCTCTCATCAAGTTGTCTCCTAAGAAGACGTGGGAGGGGTTTATCGGGGGTTTCTTCGCCACTATTGTTTTTGGAATCTTACTGTCCTACGTGATGGCAGGTTACCGCTACTTTGTGTGTCCTGTGGAGTTTAACAATGACTCCAACAGTTTCACAGTAGACTGTGAGCCATCTGAGCTCTTCCAGCTTCACGACTATGGTCTGCCGCCTGTATTGCAGTCCCTCACGGGCtggACCACAGTAAAGCTGTACCCATTCCAGATCCACAGCATTGCTCTGTCAGCATTTGCCTCCATCATGGGACCTTTTGGAGGCTTTTTCGCCAGCGGCTAAAGGGCCTTTAAAATCAAGGACTTTGCAAACACCATTCCAGGGCATGGAGGAATCATGGATCGCTTCGACTGTCAGTACCTTATGGccacatttgtaaatgtttacattgCCAGCTTTATCAGAGGGCCGAACCCCTCTAAAGTCATCCAGCAGCTTCTTGCTCTGAGACCAGACCAACAGCTCCACATCTTTAACTCGCTCAAGGCTCATCTGACAGAGAAAGGTCTGCTCCCTGCCCTGGAAGAAGCAGCCTAGCTTTTCGGCCCACCCCACCGGAGCAGGCTGTGAATGGAGGGAGGACAGAGAGTGCAACAGAAGCAGATCCAGGCATGTATGGAAGCGGGAGATGAGATGATGAACATAAGAAGGGAAACAACAGAAAACTGAACTACAATCTTGGGTCATtccattttcagtgtgtttgcgagaaagagagtgagtgtgtgtattagtgtgtgtgtgtgtgtgtgtgtacaaatcagtgttttttgcctttttttatttttgtgaatgttttatgtttatctcTTACACCACaaaagaatattatatatatatatatatatatatatatattaagatgaCATTGTTGTTACAGTTCTTTGTGAATCGAGCTGTACAATTCCACTTGTGTACAAATGTTCTGTACCTATAGATCGTCTGAATATTttatagtgtttgttttattttgttttaatgcactgCTCATCACACTGTCATTTCAACCTCAGGctagtctttttgtttgtttttttgataacGGGTGTTTCCATACGCCATCATAGTTTCAAAAAAGATTGTATTTTCACTGCAGAGTGCCGTAATTCATTTTTCCGTGGTGATgggttttgtaaca

Function

symbol description
cds2 Predicted to enable phosphatidate cytidylyltransferase activity. Acts upstream of or within angiogenesis; positive regulation of ERK1 and ERK2 cascade; and positive regulation of vascular endothelial growth factor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in trunk vasculature. Orthologous to human CDS2 (CDP-diacylglycerol synthase 2).

NR:

description
PREDICTED: phosphatidate cytidylyltransferase 2

GO:

id name namespace
GO:1900748 positive regulation of vascular endothelial growth factor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0016024 CDP-diacylglycerol biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004605 phosphatidate cytidylyltransferase activity molecular_function

KEGG:

id description
K00981 E2.7.7.41, CDS1, CDS2, cdsA; phosphatidate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239593.1 True 2041 mRNA 0.45 14 12396282 12409668

Neighbor

gene id symbol gene type direction distance location
arhgap25 LOC107741203,LOC107557123,LOC107663229,LOC107654642,LOC107743332,LOC107597266 coding downstream 2240 12381364 ~ 12394042 (-)
LOC122345273 NA coding downstream 32567 12356836 ~ 12363715 (-)
LOC122344659 NA coding downstream 122644 12272217 ~ 12273638 (-)
LOC122345275 LOC107597264,LOC107672815,LOC107742671 coding downstream 199905 12190702 ~ 12196377 (-)
LOC122344646 NA coding downstream 219067 12173037 ~ 12177215 (-)
hs3st1l2 hs3st1l2,LOC107557106,LOC107741295,LOC107743333,LOC107654638,LOC107663220,LOC107578102 coding upstream 2673 12412341 ~ 12428382 (-)
si:dkey-174n20.1 si:dkey-174n20.1,LOC107696056,LOC107741298,LOC108255501,LOC108444311,LOC105893868 coding upstream 100898 12510566 ~ 12513965 (-)
limk2 limk2,LOC107743341,LOC107654635,LOC107696070,LOC107741211 coding upstream 130616 12540284 ~ 12560679 (-)
LOC122345379 NA coding upstream 230709 12640377 ~ 12642522 (-)
cmklr1 LOC107743349,LOC107597353,LOC107654611,LOC107741300,LOC107696054,LOC107595970 coding upstream 232988 12642656 ~ 12644497 (-)
G35812 arhgap25,LOC107597266,LOC107743332,LOC107654642 non-coding downstream 139470 12255480 ~ 12256812 (-)
G35805 NA non-coding downstream 147574 12226918 ~ 12248708 (-)
G35804 NA non-coding downstream 148773 12228582 ~ 12247509 (-)
G35797 NA non-coding downstream 213303 12181487 ~ 12182979 (-)
LOC122345280 NA non-coding downstream 216532 12179051 ~ 12179750 (-)
G35922 LOC107696053,LOC107654639,LOC107743336,LOC107595973 non-coding upstream 34119 12443787 ~ 12445220 (-)
G35923 NA non-coding upstream 38546 12448214 ~ 12450765 (-)
G35928 NA non-coding upstream 54238 12463906 ~ 12515550 (-)
G35949 NA non-coding upstream 122722 12532390 ~ 12537802 (-)
LOC122345380 NA non-coding upstream 192548 12602216 ~ 12606938 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 76597 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 226872 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 580338 11795656 ~ 11815944 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other downstream 743655 11583780 ~ 11652627 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other downstream 929160 11419955 ~ 11467122 (-)
G35936 NA other upstream 92246 12501914 ~ 12505958 (-)
G36047 NA other upstream 644176 13053844 ~ 13054857 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 1169393 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 1244626 13654294 ~ 13699226 (-)
G36298 NA other upstream 1307456 13717124 ~ 13718543 (-)

Expression


Co-expression Network