LOC122345463 (sema4c,LOC107699920,LOC107697240)


Basic Information

Item Value
gene id LOC122345463
gene name sema4c,LOC107699920,LOC107697240
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 3022849 ~ 3089522 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239626.1
CCGATCCGCCTCATCGCTTCAGCGATACCCATCAGGAGGCAGTATATCTCCGGCGCAGTGTGTGTGGCGAGCCGGAGCTGCGCGGAGCACCTTTGTCTCTCTCAGAGCTTCACTTTAACAGGGCGCGGGGTTCAAGTTGCCGAGACGGAGGGGAACCGCTTTGAAGAAGTGGATCTTGACGGGTTTAATGCGCCCTCCCTCTCTAGAACTACTACAAAGGGAGTGAACGGAGAGAGTTCCGCTGCGTAAACCGACACCGACCATCGCGCCGCTCGCTCGCTCGCCCGCCCGCGCTCCTAGGCGTCAAGAAAGAGAGCATGCGGGAAAACGCAAGGAGCTGAGTCTTTCTTTGGAAAATGTGGGATTTGTTGGCCTCGTTTTGAGATGGTGCTCTTGTAAGACCGAGCGCCGTGAGCGTTTGCGTGCGTTTTTGGACGCGCCGACCGCCGTGAGCGTTACGCGCCGACTCGCCGGAGGAGCCGTTGTGTGCGTCTGGAGCCTCGTCGTCCAATCAGAGCCCTTGCTTCTCGTCCAATCACAATCTGCGTTATAAAAGAAATGGGGTGCGCCAAAGTTCTTCTGGTGATGTTTGTGATCGGCTTTGAAAAGGGGATTTGCGTCAACTGGAACCCCGTCCCTCGCAAGACGGTCAAATATAATGACGTGCACGACAGCATGGCGCGGTTTCGCGCGGTCGGGGTGTGGAACTACACCATGTTGACCCTGGCCGAGCACGAGAGGGTTTTGTACGTCGGAGCCAGAGAGCACATCTTCGCCCTGGATCCCAACGACATCAGCAGACAGCTCCGACCACAGattGAGTGGTCTGCTCCGgcggaaaagaaaagagagtgCGCAGCGAAGGGGAAGAATAACCAGACCGAGTGCTTCAACTACATCCGCTTCCTGCAGAGCTACAACCACACGCACCTGTACACATGCGGCACATACGCCTTCCAGCCCAAATGCACCTACATCAATGCAGATCATTTCGCCCTGGATAGCGCCGCCCTGGAGGACGAAGGAAAGTGCCCTTACGACCCCGCCAAGGGTCACACAGGACTGATCGTGGACAAAGAGTTGTACTCCGCCACCCTCAATAACTTTCTGGGCACCGAGCCTGTAATCCTGAGGAACCTGGGACAGCAGCATTACAGCATGAAGAGTGAATATCTGCCGGCGTGGCTCAACGAGCCAAACTTCGTGGGTTCGGCGCTGGTCCGGGAGAGCCGCAACAGTAAAGATGGAGACGACGATAAGATCTACTTCTTCTTCAGCGAGAGGGCGGTGGAGCTGGACTGTGACAGCGATCTGACCGTGGCGAGGGTGGCACGTGTGTGTAAGGGAGACTTGGGCGGCACACGGACCCTGCAGAAGAAGTGGACCACCTTCCAGAAAGCTAGGCTGATGTGTTCTTTCCCCGAGCGCCACATCACCTTCAATAACCTGCGAGCTGTCTTCACCTTGCCCGGGGCTGACTGGAGGAGCACCAGCTTCTACGGCATCTTCCACGCGCAGTGggggGACGTGGACGTGTCTGCGGTGTGTCAGTACCAGATCGGAGAGGTGAAAAACGTGTTCGACGGGCCGTATAAGGAGTACAGGGAGTCGTCTCAGCGCTGGGGCCGATTCACTGGCACCGTTCCCAGCCCTCGACCCGGAGCGTGCATCACGAACTTTGACCGAGAGAACGGCTACAACAGTTCTCTGCAGCTGCCCGACGCCACGCTGAACTTTGCCAAGAAGCATCCGCTGATGGAGGACCGGGCCGAAGCTCGCCCCCTGCTGCTCACGAAAGGCATCAACTTCACCCGACTAGCAGTGGACAGAGTGAGCTCGCTGGACCAGAGACCCTACAACATGCTCTTCATAGGCACAGCGGATGGATGGCTCCAGCGTGTGGTGATTCTGGGTTCAGAAGCTCATGTGATAGAAGAGATCCAGCTGTTTGATCGGCAGCAGCCGGTGGACAGCCTCACCATCTCACACGGCAAAAAGTATTTGTACATTGGCTCGCGCTCCGAGGTTCTTCAGCTGCCCTTGGCAAACTGCAGCCGCTACCATTCACAGCCAGACTGCCTTCTGTCCCGAGATCCATACTGCGCCTGGGACAGCGAGGACCGCTTGTGTCCGTGCATCGACCTCCACCGCGGCTCCACATCCACGCTCTCACAGGACCTCATGCTGGAGAGGTTCAGCCGAGGAAAAGCCAAGTTTGATAAGCCTTTCTCCATCCCCAGTCCAGatcATTCTAGGTTGCGAAATGTGACTGTGGTTGTTGGGTCAGATCTGGTTTTGCCCTGCCATCTGGTTTCCAACTTGGCCCAGCCTTTCTGGGAGCTCAACGAACGTGAGCTGGCCCTGGTGGAAGGCGAGGGCCCGGGGCCCCGATTCGACCGAGCCCTCCGCGCCCTCGTCATCCCCCAGGCCGGGCCCCTTCAGGCGGGCCGCTACATCTGCTTCTCGGAGGAGCAAGGCGTGAAGTTCCAGACGGAGAGGTACCAGGTGGCGGTGGTGGCCAGCGCACCCGTCTTCATGGAGGCCCGGGCCCCGGACGGAAGCATGGGCTTGTTCTGGGTCCTGGTGATCACTTTGGGAGCCGCTTGTCTGCTGCTGCTCATCGCATCTTTGTATCTGCGCCGGAGACTGAAGTTGGCGCTGGGTAAAGGGGCGGAAATGAAGCCGCTGGAGAGCACTTTGGTCTACCCCATCACTTTACCCAAAGAGCCTCCGAGTCGCCCGTCCTTCGTCCCGAGCAAGATGGCGAACGACGAAGACCGCTTCTGGGAAACGGGGGCCAATTATTACTACTCGGACGGCTCGCTAAAAATCGTGCCTGGGCATGCGCTGTGCTCCACAGGGAGCTCGGCGTCCCCGAGCGCCATTCCCGGTCAGCCCATTCACTCTCCGAGCAGACTGAGCCTCACCAACATCCGGAGCTCGAGCGCCAACGGATACATCCGGCTCAACCTGAGCACGGCCGGAGAGGAGCGCTCCAGCATCCAGGGCATCGGCATGGCCGGCCGAGACAGCGACTACTCCAGCCCGTTCAAAGAGGAGCTCCGGAAAACTCTGCAGCAGAGGAGCGTGCTTCCCGACGCCAATCCCGAGGAGTCTTCGGTGTAAACCTCGTGACGCGGGAAAACCTCAGCTACCTCCCTCCTGCTCGGGGAACTCTCTTCATCCGCAAACTCTTTCTTCTCAGTCAGCACTTCCATCTCACGACATTCCCTTGGATTATTCTACTAACATTCGACGAGCTTTTGTACATGTCTGTTTTGGAAGGACCGGAGCGACCGAGCCTCGGCTAAAAGCAGGTACATCTCTGAGAGGAACCCAACCAGCCGAATGTAGCCGTGGGTCTGAACTGCGACTGATAACAGACCCCTATCGTTTGGCGAGAGGATGCGGAGTTTATTTTTGACGACACGTTTGAGACGCATCAACTCCAATCGCTCGATGACAATCACGCTCGGGAGTGAGCCGTTAAACCGAAGCAGGACTCGAACGACGAACTAAGCGCTTTGCCTTTCTTTCTTCGCGGCTCgacgattttttaaaaagtcttttttctGAGAATGTGTACTGAGACTTGCAGCACTAATATATTGTGAGGTTTTTTCCATGTCTGTTTATTGCAAggatttcttcttctttttttttacgattGCGATTTACGATAGCTTCATCTGAAATGTGAAAGGATGAGCAGTGCTAGTAGCATGCAGCAGAATGTTGTACTAAGACTGCGTTGGATGTGACAGCAAGtgcattactgtatatatttggcTGGAGCTGCCAAATGAAGTACAAGCC

Function

symbol description
sema4c Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axial mesoderm; brain; lens placode; olfactory epithelium; and solid lens vesicle. Orthologous to human SEMA4C (semaphorin 4C).

NR:

description
PREDICTED: semaphorin-4C-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239626.1 True 3816 mRNA 0.56 17 3022849 3089522

Neighbor

gene id symbol gene type direction distance location
kat6a kat6a,LOC107708249,LOC107697242,LOC107755858,LOC107699914,LOC107551817 coding downstream 112467 2876309 ~ 2910382 (-)
ap3m2 ap3m2,LOC107755857,LOC107551816 coding downstream 147956 2866165 ~ 2874893 (-)
tet3 LOC107654213,LOC107708251,LOC107557386,LOC107697244,LOC107551814,LOC107755856 coding downstream 156806 2824171 ~ 2866043 (-)
LOC122345702 figla coding downstream 413264 2607214 ~ 2609585 (-)
mxd1 mxd1,LOC107670395,LOC107708253 coding downstream 443046 2555476 ~ 2579803 (-)
gnb1l gnb1l,LOC107708243,LOC107755863,LOC107551810 coding upstream 254037 3343559 ~ 3376526 (-)
txnrd2.2 txnrd2 coding upstream 301472 3390994 ~ 3417741 (-)
taok3a taok3,taok3a,LOC107699916,LOC107697236,LOC107708246 coding upstream 333362 3422884 ~ 3494193 (-)
si:dkey-1k23.3 LOC107560961,LOC107656799,LOC107702214,LOC107755870 coding upstream 529656 3619178 ~ 3622404 (-)
xbp1 xbp1 coding upstream 570182 3659704 ~ 3662910 (-)
G32910 NA non-coding downstream 37866 2982767 ~ 2984983 (-)
LOC122346059 NA non-coding downstream 72517 2948484 ~ 2950332 (-)
G32906 NA non-coding downstream 85911 2936481 ~ 2936938 (-)
G32881 NA non-coding downstream 225250 2749959 ~ 2797599 (-)
G32883 NA non-coding downstream 248659 2767779 ~ 2774190 (-)
G32922 NA non-coding upstream 86197 3175719 ~ 3176249 (-)
G32999 NA non-coding upstream 204084 3293606 ~ 3327241 (-)
G32998 NA non-coding upstream 251077 3340599 ~ 3343240 (-)
G33008 NA non-coding upstream 298762 3388284 ~ 3390379 (-)
G33109 NA non-coding upstream 517945 3607467 ~ 4098373 (-)
LOC122344624 LOC107699921,LOC107708239,LOC107755860,LOC107697241,LOC107551809 other downstream 10030 2935743 ~ 3012819 (-)
G32908 sema4c,LOC107697240,LOC107708238,LOC107699920 other downstream 62672 2951462 ~ 2960177 (-)
add2 add2,LOC107668755 other downstream 416932 2586587 ~ 2605917 (-)
snrnp27 snrnp27 other downstream 437397 2580548 ~ 2585452 (-)
G32857 NA other downstream 468703 2496504 ~ 2554146 (-)
coq5 coq5,LOC107560969,LOC107707852,LOC107656810,LOC107561264,LOC107702223,LOC107707851,LOC107560965,LOC101158254,LOC107755815,LOC107561265 other upstream 655153 3744675 ~ 3752764 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other upstream 789128 3878650 ~ 3898578 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other upstream 1055334 4144856 ~ 4193081 (-)
G33175 NA other upstream 1532968 4622490 ~ 4623058 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other upstream 3734649 6824171 ~ 6826182 (-)

Expression


Co-expression Network