mamdc2a (mamdc2,LOC107699737,LOC107703267)


Basic Information

Item Value
gene id mamdc2a
gene name mamdc2,LOC107699737,LOC107703267
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 19424198 ~ 19441113 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239634.1
AAATAGAAGCGCTCCCTCCTCCCACTGTCTGCTCAAAGCATGGAGAGCGAATGCCGCGGTTAGCGGACCTTCACACTTACTCCAGCATCCCTGCAACTTCAGCCATGACTTTGCTTCACTTCTCAACCCTTCTGGCGGTCGCTTTCCTGGCGCGGGCTCAGACGCAGCTTCTGCGGGGCTCCTGTAGTTTTGAGTCGGACAGCTGCGGCTACACGTCCGATCCCGCTTATGCTGCCTGGACCATCAACGACGAAGGCCGCTTCATTACAGCAGAGTCCTCATCTTTTAGTGAGAAAGAGAAGTATGTCCTGGTCAGCCCGGAGCTGGAGCTCAGAGACTGGAGCTGTGTGCGGTTGGTCTATCAGATCTCAGGCTCAGGCTCTCTTCAACTGCACTTACGACCCGAGGGTGAGAACTTTGACTACAAGTTATGGACAACGGAGAAACCTTCAGACAGTTGGCTCATTGCCAGCGTGGACGTCCGTAATATGTCTGGGGCTTACCAGttattatttgACGCTGAACCCAGAAGAGGAATGGGAAATAGTGTTGCTCTTTTCGAAATACACATCATCCCTGGATACTGTATAGAGTGCAACTTTGAGGAGCACCACTTGTGTGGCTACAGTAATCAGTGGAATCCCAATGTGAACTGGTATGTGGGTGGGAGTATGGCTCGGGACCCTCAGTCAAACCTTCCAGATGACCACACCATGAACAATGAGAGAGGTCACTACATGTATGTGGACTCAGTTTATGCTAAAAGGTTCCAGGAGGTGGCCAAGTTGGTGTCGCCAATGACGACCACTTCAATGGCAGGGTGCTTGACCTTTTACTATCAAAGGGACCAAGCCATTGGGAATTTCTTTTCGGTCTTCACTAAGGATCAGCTGGGCCACTATGATGAGATATGGAGGCCTGATGTGTATGCAACAACAGATTGGAAGTTAGTTCAAGTGGATATTAAGGCACCACATTCTTTAGAGGTGGTGTTTGAGGTGGCGTTCAACAGTGCTCGTGGTGGCTACGTTGCTTTGGATGACATTTCGTTCTCCCCAGAGTTTTGCCACACAGAGACAGAGCCAGCGTTTGACCCCTCTGTTGCAAACTGTGATTTTGAGGAAGGCCTGTGTCAGTATTATCAGGAACAGACCGGAGGTTCAGTGTGGAACAGGGTCTCTGTGAATCCAAATGTTTACCGCATCGGAGATCACACTGCAGGCACTGGGTCTTTTCTGCTGGCCAACACTCGTCATACCTCTCGTCCAGGGTATGTGGGTCGTCTTTTTGGACCGTCCCTACCAGGGAACCATAAATACTGCCTCAGGTTCTACTATGCCCTGCATGGCTTCATGAAAATAGATAATGCTCTGGCTCTCTATGTCTATGATGAAGACAACATAGCTCAGGAGAAAATCTGGACCGTGTCTGAGAGGTCTAAAGATGTTTGGACAGCGGTGGAAGTCACATATCTAAAGCCAATGCCTACTAAGGTAGCATTTGTCAGCATCTGCAGAAACTTCTGGGACTGTGGGCTTGTATCTCTCGATGACATCTCAGTGACCCTTGGAGACTGTCGGGTTGCTACAGGCCCCTTGAATCCACCTCCTGGACATTGTAACTTTGAAACTGGTGACTGCGGCTATAcccagaaaaagaaagataaaagagcACATTGGTTCCGGATCAGGGGACACACACCCACGTCTTACACAGGGCCCAAGGGGGACCACACCTTAGGGGTAGGCTACTACATGTACATTGAGGCATCTCACATGTTACCCAAGCAGTCGGCCCGGCTCAGGTCCGCTGAGCTGAGGGGTTCAGCTGGACCTCAGTGCCTGATCTTCTTCTATCACATGTATGGCTCGGGCACAGGAGCTCTGAACGTCCTGCTGCATAAGGGAGACAGGGAGAGACTGCTTTGGACCAGACAAGGAGAACAAAGTGTGTCCTGGATGAAGGCCATGGTGGATTACGAGTGTTACACAAGGCACTGGATTATATTTGAAGCTGTCAGGGGATCTTCTATAAGGAGTGACATTGCAATCGATGATATTGCGTTTAAAAAGGGACCATGCAATGaTCCTGGAGACAGCATCTCATACTCAGGATTTTCagaaaatttgaatgaaattgaTTACTGAGCGAGGCCCAGGAATGCTgacatgtgtttgtttttatttgtgtgtcacTGGGGATGGGGAGACTGGGCGAGAGAAAAGAACGTTTGTTACCTAGACTCAACAGTGTTCTGCAGAGTCTGCCCATGCATGGCTACATGGAAAGACACACGCTTCATTGTTCTTTTATAGGTGGTATGATGTGTCTAGTTGTTGATATAGCCTGATATTTTTTGGATCACTGAGACAGCTCGGGAACtgtcttatttttatgtattagaGAACAtcagaaaatacttttaatttttgaaatgtgTCGACATTGCTTAGCAGCATGCTGCTAGGTAGCAAAAACATTCAGATTTCTATTTGCTGAGGTGAACGTTTTCTTGTTTGTTCTTACACTGATCAGTGTCCGGGATGATAACAGGTTTGGGCTAATGACAAAGTTCAGGTCATGGTTTGTATACATTCTCACCCACagtgtttcatttattaaactttcaaaatattaaactttttaaaataaaaaaaacaaacgtctTTGTAAGTTCTTGTAGATTCCCATCAGAATCACAATACtgtaaacattcaaatatcagCCTCGTGCAGTCTCGCCTCAAGGCTTCTAGAAATACAAGTgaagcttgctttttttttacattaagaaaaagcaatctaaaatattttttagtctTATAATTTACTGCCATCTTGTGGAATGAATGTGAATTGAAACCTTGTTGAACCATTTTtcgaaattataaaaaaataccttaTTAGTATCCTTCTAAACGTTAACTTATActactaaatgtattttattttatatgacatacatatattttttccagCTTGTATTCCGTACTCTTTATGTTTTGTTCTCatcaaataaaagatat
>XM_043239635.1
AAATAGAAGCGCTCCCTCCTCCCACTGTCTGCTCAAAGCATGGAGAGCGAATGCCGCGGTTAGCGGACCTTCACACTTACTCCAGCATCCCTGCAACTTCAGCCATGACTTTGCTTCACTTCTCAACCCTTCTGGCGGTCGCTTTCCTGGCGCGGGCTCAGACGCAGCTTCTGCGGGGCTCCTGTAGTTTTGAGTCGGACAGCTGCGGCTACACGTCCGATCCCGCTTATGCTGCCTGGACCATCAACGACGAAGGCCGCTTCATTACAGCAGAGTCCTCATCTTTTAGTGAGAAAGAGAAGTATGTCCTGGTCAGCCCGGAGCTGGAGCTCAGAGACTGGAGCTGTGTGCGGTTGGTCTATCAGATCTCAGGCTCAGGCTCTCTTCAACTGCACTTACGACCCGAGGGTGAGAACTTTGACTACAAGTTATGGACAACGGAGAAACCTTCAGACAGTTGGCTCATTGCCAGCGTGGACGTCCGTAATATGTCTGGGGCTTACCAGttattatttgACGCTGAACCCAGAAGAGGAATGGGAAATAGTGTTGCTCTTTTCGAAATACACATCATCCCTGGATACTGTATAGAGTGCAACTTTGAGGAGCACCACTTGTGTGGCTACAGTAATCAGTGGAATCCCAATGTGAACTGGTATGTGGGTGGGAGTATGGCTCGGGACCCTCAGTCAAACCTTCCAGATGACCACACCATGAACAATGAGAGAGGTCACTACATGTATGTGGACTCAGTTTATGCTAAAAGGTTCCAGGAGGTGGCCAAGTTGGTGTCGCCAATGACGACCACTTCAATGGCAGGGTGCTTGACCTTTTACTATCAAAGGGACCAAGCCATTGGGAATTTCTTTTCGGTCTTCACTAAGGATCAGCTGGGCCACTATGATGAGATATGGAGGCCTGATGTGTATGCAACAACAGATTGGAAGTTAGTTCAAGTGGATATTAAGGCACCACATTCTTTAGAGGTGGTGTTTGAGGTGGCGTTCAACAGTGCTCGTGGTGGCTACGTTGCTTTGGATGACATTTCGTTCTCCCCAGAGTTTTGCCACACAGAGACAGAGCCAGCGTTTGACCCCTCTGTTGCAAACTGTGATTTTGAGGAAGGCCTGTGTCAGTATTATCAGGAACAGACCGGAGGTTCAGTGTGGAACAGGGTCTCTGTGAATCCAAATGTTTACCGCATCGGAGATCACACTGCAGGCACTGGGTCTTTTCTGCTGGCCAACACTCGTCATACCTCTCGTCCAGGGTATGTGGGTCGTCTTTTTGGACCGTCCCTACCAGGGAACCATAAATACTGCCTCAGGTTCTACTATGCCCTGCATGGCTTCATGAAAATAGATAATGCTCTGGCTCTCTATGTCTATGATGAAGACAACATAGCTCAGGAGAAAATCTGGACCGTGTCTGAGAGGTCTAAAGATGTTTGGACAGCGGTGGAAGTCACATATCTAAAGCCAATGCCTACTAAGGTAGCATTTGTCAGCATCTGCAGAAACTTCTGGGACTGTGGGCTTGTATCTCTCGATGACATCTCAGTGACCCTTGGAGACTGTCGGGTTGCTACAGGCCCCTTGAATCCACCTCCTGGACATTGTAACTTTGAAACTGGTGACTGCGGCTATAcccagaaaaagaaagataaaagagcACATTGGTTCCGGATCAGGGGACACACACCCACGTCTTACACAGGGCCCAAGGGGGACCACACCTTAGGGGCTACTACATGTACATTGAGGCATCTCACATGTTACCCAAGCAGTCGGCCCGGCTCAGGTCCGCTGAGCTGAGGGGTTCAGCTGGACCTCAGTGCCTGATCTTCTTCTATCACATGTATGGCTCGGGCACAGGAGCTCTGAACGTCCTGCTGCATAAGGGAGACAGGGAGAGACTGCTTTGGACCAGACAAGGAGAACAAAGTGTGTCCTGGATGAA

Function

symbol description
mamdc2 Predicted to enable glycosaminoglycan binding activity. Predicted to act upstream of or within peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan. Located in endoplasmic reticulum.

NR:

description
MAM domain-containing protein 2

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239634.1 True 3025 mRNA 0.45 14 19424198 19441113
XM_043239635.1 False 1959 mRNA 0.50 12 19425715 19441113

Neighbor

gene id symbol gene type direction distance location
si:ch211-117c19.1 LOC107703232,LOC107555504,LOC107756280,LOC108423640,LOC107577894 coding downstream 59 19419882 ~ 19424139 (-)
rgmb rgmb,LOC107555502,LOC107756312,LOC107720270,LOC107699736,LOC107703266,LOC107587502 coding downstream 83596 19328152 ~ 19340602 (-)
erap2 erap2,LOC107699735,LOC107756311,LOC107703265,LOC107720206 coding downstream 100659 19314148 ~ 19323539 (-)
LOC122345207 LOC107720271,LOC107699734,LOC107587503,LOC107756310,LOC107703263 coding downstream 111053 19297299 ~ 19313145 (-)
cdk7 cdk7,LOC107756278,LOC107720222,LOC107703229,LOC107699696 coding downstream 203032 19217735 ~ 19221166 (-)
fam189a2 fam189a2,LOC107756315,LOC107703269 coding upstream 69672 19510785 ~ 19520743 (-)
zgc:158260 LOC107720201,LOC107587533,LOC107699685 coding upstream 92051 19533164 ~ 19537861 (-)
ppef2a ppef2,ppef2a,LOC107699745 coding upstream 120223 19561336 ~ 19571888 (-)
LOC122346078 naaa,LOC107699746,LOC107703218 coding upstream 132384 19573497 ~ 19578642 (-)
LOC122346077 LOC107587493,LOC107756319,LOC107703272,LOC107567144,LOC107720200,LOC107699749 coding upstream 140678 19581791 ~ 19593212 (-)
G37801 NA non-coding downstream 137350 19286627 ~ 19286848 (-)
G37800 NA non-coding downstream 141507 19282377 ~ 19282691 (-)
G37799 NA non-coding downstream 142106 19281865 ~ 19282092 (-)
G37792 NA non-coding downstream 198769 19224352 ~ 19225429 (-)
G37776 NA non-coding downstream 291054 19132813 ~ 19133144 (-)
G37877 NA non-coding upstream 64808 19505921 ~ 19510282 (-)
G37926 NA non-coding upstream 260956 19702069 ~ 19702343 (-)
G37928 NA non-coding upstream 262307 19703420 ~ 19703685 (-)
G38019 NA non-coding upstream 515315 19956428 ~ 19956662 (-)
G38147 NA non-coding upstream 714668 20155781 ~ 20160794 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 240220 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 2073818 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 2564267 16787809 ~ 16859931 (-)
G37277 ncam1a,LOC107681081,LOC107548183,LOC107756101 other downstream 2711031 16687260 ~ 16713167 (-)
G37258 ncor2,LOC107687981,LOC107684513,LOC107753125 other downstream 2791077 16596855 ~ 16633121 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other upstream 423906 19865019 ~ 19935576 (-)
G38058 NA other upstream 610546 20051659 ~ 20055798 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 684476 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 953618 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 1464930 20906043 ~ 20936097 (-)

Expression


Co-expression Network