tmprss4b (LOC107599211,LOC107663417,LOC107746388,LOC107734130,LOC107661196,LOC107596117)


Basic Information

Item Value
gene id tmprss4b
gene name LOC107599211,LOC107663417,LOC107746388,LOC107734130,LOC107661196,LOC107596117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14010323 ~ 14014376 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239652.1
CTAAAAAAGTATCTAGTGAGCTGCTAGCCATTTGTATGAAAGGAACCCTCTTGAGATTCACTAGGTAGAACTACGAGATAATATTAAACCATTCTTAATATATTTAGCCATACAACCAGTAAAATCTACAGTTTTGGCTAGATTTCTGTCTATCAGTTTAATTCTCTGGTTCTCATGGCCCTGAGGCTGAAGCGAAGGCGAGAATTGAGCACACTGAGGACCGAGGAGAGCAGAGCACGCTGGAGGTTGACCGTTATCACTGTGTGCTGTGTGCTAGTCATACTAGCGACCTTGATAGTGGGCTTGTATTTTAcCATTAAGTTAGTGAATAGCAAGTTTTTCTTCTGCTCTGGCTCACTGAAGTTCATTTCAATAGAAAAAGCATGTGATGGAAAGGCTAACTGCGCAGGTGGTGAGGATGAAATCACGTGTGTATCTAAACTGCAGACCAATGACACGTATCCAGTTAGGCTGATGGGGGACAGACTGGTCCTGCAGGTGTTTATTAATGAAGGTGGATGGAGAACAGTGTGTGCTGATAACTGGAGGACAAAGCACACGCGGTTAGCCTGTAAACAACTGGGTTATACAGTGAGTCCACGAAGTACACGTGTCCCGGTAAAAAGTCTGCTTTTCAACCctcaaaatgcatttgctacAGTCAGCAATGACTCCACACACTCTGACATTCAGAGTTTCCTCTCAGTCAGTGACAAATGTTACTCTGGCTCAGTGGTATCTGTTTCCTGCTCAGACTGTGGAGAGGTGGTGGGAGAGGACCGTATTGTTGGTGGGGTGGACACCGCAATCAAACACTGGCCGTGGCAGGTTAGTCTTCAGTGGAACTACCAGCATGTTTGTGGAGGAGCATTGCTTTCCAAGTACTGGATCATATCAGCTGCTCACTGTTTCACAGGCCGGACACGAGACCTGAGTCAATGGACTGTGGTGTTGGGCCAGACCGAAATGGCAGGATCCAGGGGTGTTGGCGTAGAGACAATTGTTGTCCACAATAACTACAGTCGCTTGAGTAATGACTTTGACATCGCCATGCTAAAACTCACTTGGCCTGTCACTGTTGGGGAATCGATCGTGCCAGTTTGTTTACCCCCACACCAGCTATCTGTGAAGGACATGCTTGTGGTGACTGGGTGGGGATTGCTCAAGGAGAAAGGTGAGCTGCCCTCTGTGCTGCAGAAAGCTTCGGTGCCCCTGATCGACAGGTCAGAGTGTTCCAAGCCTTCTGTTTACGGTTCTGCCATAACTCCCAGAATGCTTTGTGCTGGATTCCTCAAAGGAAACATAGATGCGTGTCAGGGTGACAGTGGGGGACCGCTAGTGTACCTTTCATCTCGCTGGCAGTTAATGGGTATAGTGAGTTGGGGAGTTGGCTGTGCACGCGAGGGAAAACCTGGAGTATATACCGATGTTAGTCAACTTCTCAACTGGATTTACACTGTAATGGAAGtatatttcacataattttgcacattaatatataaggaaaatatatttccatACTAAATGTTATGTTTCAGAGACATCCATTAGAAGGTAAACCATGGATACGTAACTCAATGCTTTTGTGACAGGAGGAGAAACAAATCTCCTCAGAGTACAGAAATCTGTGTTCTTGAATGTAGATGTTGTTCCATTTTATTGACAAAACTGTCAAGTCATGCTTTTTATAGACTCACTATTAACTCACTATTCCTGTTAGTCTACTGTATGTTCATTATaaagctgttttaatatttttctgaccaaaaacaaagaaaaaaataaaataataaagctctTA

Function

NR:

description
transmembrane protease serine 4-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239652.1 True 1801 mRNA 0.44 10 14010323 14014376

Neighbor

gene id symbol gene type direction distance location
panx1b panx1b,LOC107746435,LOC107663420,LOC107734119,LOC107548450,LOC107596208 coding upstream 26595 13978210 ~ 13983728 (+)
epd LOC107596209,LOC107661259,LOC107734118,LOC107663416 coding upstream 33303 13975414 ~ 13977020 (+)
myo1ca LOC107746384,LOC107548455,LOC107663411,LOC107734145 coding upstream 45284 13944782 ~ 13965039 (+)
dpf2 dpf2,LOC107596122,LOC107548457,LOC107734150,LOC107746382 coding upstream 72992 13926712 ~ 13937331 (+)
cdc42ep2 LOC107548458,LOC107663424,LOC107746383,LOC107734144,LOC107661192 coding upstream 86410 13916335 ~ 13923913 (+)
pafah1b2 pafah1b2,LOC107661198,LOC107734127,LOC107663423,LOC107599209,LOC107746392 coding downstream 19071 14033447 ~ 14037169 (+)
apoa1a LOC107663408,LOC107599208,LOC107746394,LOC107661262,LOC107734125,LOC107596115 coding downstream 24594 14038970 ~ 14041059 (+)
LOC122344888 LOC107746395 coding downstream 42887 14057263 ~ 14059780 (+)
si:ch211-284e13.5 LOC107746441,LOC107599206,LOC107661202 coding downstream 74055 14088431 ~ 14092482 (+)
hsd20b2 hsd20b2,LOC107596111,LOC107661247,LOC107734140,LOC107663385 coding downstream 109733 14124109 ~ 14130049 (+)
G36408 LOC107746439,LOC107663381,LOC107599230 non-coding upstream 2921 14005771 ~ 14007402 (+)
G36406 NA non-coding upstream 6792 14000526 ~ 14003531 (+)
G36405 NA non-coding upstream 9986 13999100 ~ 14000337 (+)
G36332 NA non-coding upstream 35564 13974532 ~ 13974759 (+)
G36198 NA non-coding upstream 277867 13731969 ~ 13732456 (+)
G36420 LOC107663407,LOC107599223,LOC107746393,LOC107661199 non-coding downstream 32401 14046777 ~ 14047494 (+)
G36503 LOC107599196,LOC107663386 non-coding downstream 307180 14321556 ~ 14326754 (+)
G36507 LOC107663397,LOC107567468,LOC107599188,LOC107746779 non-coding downstream 327547 14341923 ~ 14342507 (+)
G36509 LOC107567468,LOC107752360,LOC107661217 non-coding downstream 328788 14343164 ~ 14343769 (+)
G36510 NA non-coding downstream 331508 14345884 ~ 14346835 (+)
ins ins,LOC107596207 other upstream 24617 13984097 ~ 13985706 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 1202972 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 1305078 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1481533 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1754651 12249138 ~ 12255672 (+)
G36495 NA other downstream 276044 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 285667 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 318647 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 333186 14347562 ~ 14349991 (+)
fgf5 fgf5,LOC107599194,LOC107746784,LOC107663393,LOC107661278,LOC107602014,LOC107744874 other downstream 631569 14645945 ~ 14652911 (+)

Expression


Co-expression Network