hnrnpl (hnrpl,LOC107700238,LOC107693443,LOC107757553,LOC107548476)


Basic Information

Item Value
gene id hnrnpl
gene name hnrpl,LOC107700238,LOC107693443,LOC107757553,LOC107548476
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13553998 ~ 13563864 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239656.1
CCTCCTGCGGGCTGCCGTAGCTGCAGCAGTAGTGCGTTCCATTAGAACATTTCATTTGAGACAACATGGCTGCTGCGGCAGGCCATTATTACGGCGACGGAGGCAGAGcaacaaaaagacagaaaacagacaGCGACGGAATGGCCACGGAGGGTTATGAGGACCCGCACAAGACCTTGCCCTCGCTTGTGGTGCATGTAAGGGGGCTTATTGACGGCATTACCGAGGCTGACCTTGTGGAGGCGCTACAGGAGTTTGGCACCATAAGTTATGTTGTGTTAATGCCAAAGAAGCGTCAGGCCCTGGTGGAGTTTGAGGACATGAACGGCTCCTGTAACGCAGTGACATATgctaataataatcaaatctaCATAGCTGGCCGGCCATCTTACATCAATTACTCTACCAGTCAGAAAATCTCTCGTCCCAGCAACTCTGACGATACACGGAGCGTCAACAATGTACTGCTCCTTACCATAATGAACCCCATCTATCCAATTACTACGGACGTTCTCTACACCATTTGTAATAACTGTGGACCTGTGCAAAGGATTGTGATCTTCAGGAAAAATGGAGTTCAAGCCATGGTTGAATTTGACTCAGTCCAGAGTGCGCAGAGAGCCAAAGCATCTCTTAATGGAGCTGACATCTACTCAGGCTGCTGCACCCTTAAGATTGAGTATGCCAAGCCAACCCGTCTGAACGTCTTCAAAAATGATCAGGATACCTGGGACTACACCAACCCCAATTTGAGTGGCCAAGATACCGATGCAGATGGCAATTGGAACAATTCTCAAgACCCCAATGCTAACCCAAACAAGCGGCAAAGGCAGCCAGCACTGTTGGGGGATCATCCACCAGAATATGgtGGTCCTCAGGGTGGCTATGGTCATTATGATGATACCTATGGACCACCTCCCCCACCCCCTCACTATGAGGGCAGGCGCATGGGGCCCCCAATGGCGTGGCCGAGGGGACCCCGGTACGGTGGGGCGCAGTACGGACACGGACCTCCTCCGCCAGACTACAGCGCTCATGCCGACTCTCCTGTGGTCATGGTATACGGCCTTGAGCCCACCAAAATCAATGCAGACAGAGTTTTCAACATATTCTGTCTCTACGGCAATGTGGAAAGGGTGAAATTTATGAAGAGTAAACCAGGAGCTGCAATGGTGGAGATGGGAGACTGCTATGCCGTTGACAGAGCCATTTCACATCTTAACAACAACATGCTTTTTGGACAAAAACTAAATGTCTGTGTATCCAAACAACAGGCCATAATGCCAGGTCAGTCATATCAGCTAGAAGATGGCAGCTGTAGTTTTAAGGATTTCCATGGCAACAGAAACAACCGTTTCACCACTGCCGAGCAGGCAGCCAAGAACCGCATCCAGCAGCCCAGCAACGTGCTGCACTTTTTCAACGGTCAACCGGACTGCACTGTTGAAGCGTTCAATCAGATTTGTGATGAGTTGGGAATCAAGACTGCAGTCAGTGTCAAACTGTTTACTGGCAAGAGTGAGAGAAGTTCGTCTGGTCTGTTGGAGTGGGAGTCCGTAAATGATGCGATGGAGGCTCTTGCTATGATGAACCACTACCAGATGAAGAACCCTAGTGGACCTTACCCATACActcttaaactgtgtttttcaaCGGCACAGCACGCCAACTGAACCCATTATAACAACCACTAAACCTTTGACTCCCAGTGACCTTTTGAGCTCAGCACCATAGCATGTCTTAACTCTTGACCTGGAAGGAAAGAAATGGGACTGTTAAGATTACCTTTATTTCCAGAACAAGACTGGACtcaatgttttgtaatgtttatttttttattttaaattttttttaaattggtattaatgttgtttttggttttttttctttctttttttccttcagttgACCAGTCTTGTATAACAGTGAAATTGTGtgataatgtaataaattagtCAAGCTGTCA

Function

NR:

description
heterogeneous nuclear ribonucleoprotein L-like isoform X3

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239656.1 True 1966 mRNA 0.47 15 13553998 13563864

Neighbor

gene id symbol gene type direction distance location
srsf7a LOC107700237,LOC107746364,LOC107548478,LOC107757551,LOC107596141,LOC107693444 coding upstream 1581 13549020 ~ 13552417 (+)
slc8a2a slc8a2a,LOC107757550,LOC107693442,LOC107596143 coding upstream 5798 13531277 ~ 13548200 (+)
nccrp1 nccrp1,LOC107548479,LOC107757518,LOC107693441,LOC107596142,LOC107700228,LOC107746425 coding upstream 23136 13528351 ~ 13530862 (+)
mark4a mark4a,LOC107746361,LOC107596145,LOC107700234,LOC105006905,LOC107693438,LOC108444027 coding upstream 36814 13498184 ~ 13517184 (+)
exoc3l2a LOC107746360,LOC107700233,LOC107548482,LOC107757547,LOC107596146,LOC107700224 coding upstream 66055 13476178 ~ 13487943 (+)
crx crx,LOC107596137,LOC107700239,LOC107757554,LOC107693445,LOC107548475,LOC107746366,LOC105892503 coding downstream 9353 13573217 ~ 13575410 (+)
gjd1a gjd1a,LOC107700241,LOC107548473,LOC107746368,LOC107710581,LOC107596136,LOC103027887,LOC108437049 coding downstream 25318 13589182 ~ 13600365 (+)
nfkbib nfkbib,LOC107548472,LOC107700243,LOC107693450,LOC107596135,LOC107710580,LOC107746369 coding downstream 44610 13608474 ~ 13612669 (+)
tppp2 tppp2,LOC107700244,LOC107548470,LOC107746373,LOC107596214,LOC107693436,LOC107710570 coding downstream 56946 13620810 ~ 13623529 (+)
LOC122345172 si:dkeyp-110c7.4,LOC107746371,LOC107700245,LOC107596213,LOC107683146 coding downstream 59983 13623847 ~ 13626422 (+)
G36140 NA non-coding upstream 32390 13519973 ~ 13521608 (+)
G36109 NA non-coding upstream 229615 13324033 ~ 13324383 (+)
LOC122345423 NA non-coding upstream 241346 13299755 ~ 13312652 (+)
G36062 NA non-coding upstream 445145 13108632 ~ 13108853 (+)
G35905 NA non-coding upstream 668064 12885331 ~ 12885934 (+)
G36141 NA non-coding downstream 3113 13566977 ~ 13580798 (+)
G36168 NA non-coding downstream 84062 13647926 ~ 13648538 (+)
G36191 NA non-coding downstream 156921 13720785 ~ 13721566 (+)
G36198 NA non-coding downstream 168105 13731969 ~ 13732456 (+)
G36332 NA non-coding downstream 410668 13974532 ~ 13974759 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 746647 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 848753 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 1025208 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 1298326 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 1610888 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 420233 13984097 ~ 13985706 (+)
G36495 NA other downstream 726556 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 736179 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 769159 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 783698 14347562 ~ 14349991 (+)

Expression


Co-expression Network