kptn (kptn)


Basic Information

Item Value
gene id kptn
gene name kptn
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 13565166 ~ 13568196 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239657.1
CACggatgttgatttttttttcctctagcGTGACAGTCTAGTAAGGTCCTACcgaatttgtttttatttttggttgcgATTATTTGTAATATGTTACCGAATATAAAAGGCATGTGCCCCTTTGTGGAAGACAGTTTTAGTCGTTTTCCTTCGCAGAGTAACATATACGGACTCTGCCAGGCAGGCGAGCAGGAGTTACTGGCAGCGACTCTGAAGGGGAAAGTAGTGTGCTTCAGATATCAGGACCTGCAGAAGAAGATCAGACCTGTGGCCAGAGAGATTCAGTTCACATATATACCAGTTGATGCAGAAATCGTATCTATTGACGCCTTCAACAAATCAGCTCCTAAAAGAGGACTGGTCGTAGGAATAACATTCATTAAGgaCTCAGGAGATAAAGCAACTCCTTTCCTTAACATATACTGTGATTATGAACCAGGGTCAGAATATAACCTAGAGTCTATTGCACAAAGCTGTCTGAACCTGGAGCTCCAGTTTACCCCCTTCCAGCTTTATCACACTGAGATAAATTGTGGAGATGGATCCAGTGAGACCGTGTTTCTTCTCAGTGGGCATGATCAGCGCATACATCTTTACAAAGAGAATGCGTCTCTGCACCAGTTTGAGGAGCAACCAGTAGAAAGACTCTTTCCTGAACTTCAGGAGCTGCCAAGCAATGTGTTATggttaaatgttttaagcatTGATGAAAATCGGCGCCTCACAGCGTTTGGATGTCAGAACGGCTCTGTGGGGCTTTCACTTGTCAACCAAAAGGGAccagagatTCTCCAAAACTGGCGTATGCAGCACGACAGTCCCATCTCTACTGTGTCGCTGTTCCCATTGAAACAGCAGCACCAGAGCACTGACACTAACAGCAGTCAAAGGGAAACATTTAATCTGTTGGTGACCAGTGCCATAGAAATGGCTGTTGTTTACAGGGATGTGGAGCAGTATGGACTGAGCAGACAGCTGTGTTTGGCAGAAAGCGACCAGTGCGATGCAGTTCTCTGTGCTCTTGTTGTTGATCTGGACTTTGATGGACAGCATGAGTTGTTGCTGGGAACGTACGGACAGGATCTGCTGTGCTACAAATTTCACCAACCAACAGGAGCTTTTGAAGATAAGTTACAGCTGCTGTGGAGACGGAGTTTTAAAAGTCCCCTGCTGTCACTGATTTATCTAGACCTGGATGGTGATGGACTAAGAGAGCTAGCTGTTCTTACCTTAAAAGGCCTGCACATCCTACAGCACAGTCTGAAAACAACAGCAGATCTTGTTCTTCACAGACTGTCCACTTTAGTATCAAGATTGCCTAATTCTTCAAAAGACCAGTCAATTAAAAATCAAGATGGTGAGGAGGAGAGTATTTCAGTCAGCAATGAACAGAAAACTGCAGAAACCTGACACTGACTTTTAAAAGAGcagatatttgtttttatttcaaaggaAGATAAAGTGTATGAagttaaatatgtaatttgcaCCAGTAAAATGACTATAAAGTGGA

Function

symbol description
kptn Predicted to enable actin filament binding activity. Predicted to be involved in cellular response to amino acid starvation and negative regulation of TORC1 signaling. Predicted to act upstream of or within actin filament organization. Predicted to be located in actin cytoskeleton. Predicted to be part of KICSTOR complex. Predicted to be active in lamellipodium. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human KPTN (kaptin, actin binding protein).

NR:

description
kaptin isoform X2

GO: NA

KEGG:

id description
K23295 KPTN; KICSTOR complex protein kaptin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239657.1 True 1513 mRNA 0.43 12 13565166 13568196

Neighbor

gene id symbol gene type direction distance location
ckma ckma,LOC103045415,LOC107693439,LOC107596144,LOC107700235,LOC107548480,LOC107746363 coding downstream 43598 13517643 ~ 13521568 (-)
rhogc rhogc,LOC107596156,LOC107655911,LOC107548489,LOC107700906,LOC108413814,LOC103046919,LOC105893231 coding downstream 153330 13409262 ~ 13411836 (-)
taf1 LOC107746351,LOC107700907,LOC107655912,LOC107757541 coding downstream 157219 13392656 ~ 13407947 (-)
zgc:158432 NA coding downstream 173209 13388012 ~ 13391957 (-)
trnap-agg_13 NA coding downstream 189466 13375629 ~ 13375700 (-)
ftr84 LOC107746428,LOC107700242,LOC107548471,LOC108437047 coding upstream 44465 13612661 ~ 13618357 (-)
il13ra2 LOC107700247,LOC107746374,LOC107693451,LOC107710577,LOC107548444,LOC107596132 coding upstream 78452 13646648 ~ 13653051 (-)
wdr44 LOC107548463,LOC107700250,LOC107746376 coding upstream 152585 13720781 ~ 13732483 (-)
trnam-cau_26 NA coding upstream 270694 13838890 ~ 13838962 (-)
trnam-cau_27 NA coding upstream 276691 13844887 ~ 13844959 (-)
G36218 LOC108260116 non-coding downstream 1268 13562654 ~ 13563898 (-)
G36227 alkbh6,LOC107746424,LOC107700897,LOC107548452,LOC107655907 non-coding downstream 118047 13446621 ~ 13447119 (-)
G36213 NA non-coding downstream 127062 13380299 ~ 13438104 (-)
G36229 NA non-coding downstream 146204 13414876 ~ 13418962 (-)
G36230 NA non-coding downstream 150779 13412644 ~ 13414387 (-)
LOC122345175 NA non-coding upstream 50830 13619026 ~ 13643325 (-)
G36279 NA non-coding upstream 65474 13633670 ~ 13637323 (-)
G36224 LOC107700249,LOC107746377,LOC107548465,LOC107710575,LOC105912484,LOC105027847,LOC106603104,LOC106563440 non-coding upstream 139904 13708100 ~ 13711959 (-)
G36297 NA non-coding upstream 144484 13712680 ~ 13713420 (-)
G36337 NA non-coding upstream 250052 13818248 ~ 13819334 (-)
G36047 NA other downstream 510309 13053844 ~ 13054857 (-)
G35936 NA other downstream 1059208 12501914 ~ 12505958 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other downstream 1245481 12317803 ~ 12319685 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other downstream 1395756 12165403 ~ 12169410 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other downstream 1749222 11795656 ~ 11815944 (-)
h3f3c h3f3b,H3F3A,LOC101073377,LOC105909691,LOC107388308,LOC105888650 other upstream 10865 13579061 ~ 13582290 (-)
lrch2 lrch2,LOC107700248,LOC107746375,LOC107710563 other upstream 86098 13654294 ~ 13699226 (-)
G36298 NA other upstream 148928 13717124 ~ 13718543 (-)
G36336 NA other upstream 249546 13817742 ~ 13818942 (-)
LOC122345901 NA other upstream 277207 13845403 ~ 13848070 (-)

Expression


Co-expression Network