erlin2 (erlin2,LOC107655923,LOC108443303,LOC107718651,LOC107596165,LOC107700919,LOC107757530)


Basic Information

Item Value
gene id erlin2
gene name erlin2,LOC107655923,LOC108443303,LOC107718651,LOC107596165,LOC107700919,LOC107757530
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12916170 ~ 12926498 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239690.1
AATGCTACAGGCAACGTTTTTAATTGCTCATTGGTAAGCGCCAACCCTGTTTTTATACAGGAAGATATCTGTCGCCATCTAACGGTAGGATGCTCTAACAGCAGCGGAAAAGTGGGTTAAACCCGTCGTGACGTCAGACGCAAAAGAGCGTCGCTGTATTTTCCTCATCGGTCTCAGGTGTCTCTAACCGGCAATCAGGAAGGAGTTACAGTACGTACTTAGctgtttggtctcattctgacggcacccattcactgcacaggaGGTTCCAGTGTTGAAATGACATTGGGAGCAGTTGCCTCTGTGATCCTAGCCATAGGAGGAGCTGCAGTGTTTTCTGCTCTTCATAAGATTGAAGAGGGACATGTGGGTGTTTACTACAGaGGTGGAGCTCTGCTGACCTCCACCAGTGGCCCTGGCTTTCATCTGATGCTGCCTTTTATTACTACATTCAAGTCTGTACAGacaacgCTGCAAACAGATGAAGTAAAGAATGTTCCATGTGGCACAAGtGGAGGCGTAATGATCTACTTTGATCGCATTGAGGTGGTAAACTACCTTGTTCCCACAGCagTTTATGGCATTGTGAGAAACTTCACTGCAGACTACGACAAAGCTCTGATTTTCAACAAGGTGCACCATGAGCTGAATCAGTTCTGTAGTGTGCACACACTTCAGGAGGTCTACATAGGTCTATTTGATCAAATAGATGAGAATCTTAAGCTCACACTGCAGGAGGATCTAAACGGCATGGCCCCCGGACTCATCATTCAGGCGGTCCGTGTCACCAAACCAAACATTCCAGAAAGCATTCGCAGGAACTATGAACTAATgGAGAGCGAGAGAACAAAGTTACTGATTGCAGCTCAGACTCAGAAGGTTGTAGAGAAGGAGGCAGAAACGGAGAGGAAAAAGGCTGTGATTGAGGCAGAGAAGGTGGCTCAGGtggctgaaataaaatttgGCCAGAAAGTTAtggaaaaagaaacagagaaaaagatCTCCGAAATTGAAGACAGCGCTTTCCTTGCTAGACAGAAAGCAAAAGCAGATGCAGAGTTTTACACCGCACAGAGAGCAGCCGAGGCCAATAAGCTAAAACTGACCCCTGAATATCTCACGTTGATGAAATTTAAGGCAATAGCGGCTAATAGTAAGATTTACTTTGGAAGTGAGATCCCGCACATGTTCATGGACACGGGACCAGGAGGCTCCTCCTCGGCTGCTTCCAAAGCCATAGACGCCCTCTCGGAGGGCATACTGGACTTGGAATGACGACAGATGTTGCATTGTAGCATTGAGGATAAATTAACAGGTAATAAAGGAGACTAATGGTAAGTCCTTAGGTGTGTTGGTACAGTCAGTGCAGATGAAACAGCTAGTGAAGTGAAACGGTGCTGTACCAGTTGGACACTATACCTACAATTATACCCTGTTGAGTTGATCACAAGCCAGTGGTGGATAACTAGAGAATTACACTATTAAATAGAACAGAGTGTGGGAATGTGAAATCGGATGTACTGTAAGATTAGAACCTGCTTTGTgcatgatttaaatgttttaagatgCGTTGAGTTTGAAAACTAAAGaggcattcatttttttttttttttacattgtggaTTTTGACTGATCTACATTCAAAGACTTTTGTACCTCAGGGATTCTCTTGTTGGGTTTACAAAATTAAACACAGAATACATGCTAGATTAGGATTGTGTTCTTAACTATGTTGACATTTGAATTTTTACTGACTGAGCTGACTGTTCTTGTTTTTCGACCAAGCTGTAAAAAATTCAAAACGTATGGcaacaaaattatgaaaactttcctaattaaactattaactaaaatatttcgAGAGGTAACAGTTTATAGTCATGAAAATCCTGCAAAATCATCTGTAAAGTCGTGCGATACCAGTGTAAcatatagattttattattaaatataaaagtatagcATCATACGTAATTGTTTATCAGTTGTGTGCAGAGTTTAAGTATGGGTTAATAAGAATCTTTTCATCTTAAGCGATGTgcagtttactttaaaatgatatgCCCCATTAAACCGCACAGCACCCAGAGGAGTGCAATCGCGTATCTTCTCCAGTCGTTTTCACATTTCTGTGGATTTGGGACACTTAATTCTTTGTCATAGTCTCACCACTGACCTTTAGAAAGCAGCCTGCCCGTGGGCTGTTTCTCACTCGTGTCGTTAGTCATATTTGGGAAATGTTTGTAATTTCAGTTTTCCCTAAACTGTGGTTCTGTTAAAAAATACGAAAAAGTAGagcaaaggcttttttttttcagtgttaaaattgttataagatcatgtacagtattttattCTAGTAGCTCCAGATGTAGCTCAAGTGGATGAGTAGCTTGCTTTCTTTTGTTGTCAGGAATGTAGGCTACCTGTTTACATCCATACATGTCTAAATATGACGGCACATAACATAAACCGTTTTTTGCTGATATATGTATAGATGCCCCCAATAATTAACATCATTCctcttttttgtgcatttgaaatTATATCCTcactgttactttaaaaaggctttaatttagttttgaagGGCCATGTTTATTTGAACTTGTCATGCTTATGTCTGAGAACTGGCATGCTTTAAACACTGTAGCCGATTGTGTAATACCTTGTTCGAAACCTCAAAGACCCATCAGAGCTTCCCAAAGACTTTTACTGTTCATATCTGTGTTTTGCACGAGCACTGAATGCATGTTGAATCACTGTCTGTTTTTAGTAGGTTGTCATGGTTACAGTTTCTGTATGTATTGGgtgcataattgtttttatacagtaaagttTTCTAAAGAag
>XM_043239691.1
AATGCTACAGGCAACGTTTTTAATTGCTCATTGGTAAGCGCCAACCCTGTTTTTATACAGGAAGATATCTGTCGCCATCTAACGGTAGGATGCTCTAACAGCAGCGGAAAAGTGGGTTAAACCCGTCGTGACGTCAGACGCAAAAGAGCGTCGCTGTATTTTCCTCATCGGTCTCAGGTGTCTCTAACCGGCAATCAGGAAGGAGTTACAGTACGTACTTAGAATGACATTGGGAGCAGTTGCCTCTGTGATCCTAGCCATAGGAGGAGCTGCAGTGTTTTCTGCTCTTCATAAGATTGAAGAGGGACATGTGGGTGTTTACTACAGaGGTGGAGCTCTGCTGACCTCCACCAGTGGCCCTGGCTTTCATCTGATGCTGCCTTTTATTACTACATTCAAGTCTGTACAGacaacgCTGCAAACAGATGAAGTAAAGAATGTTCCATGTGGCACAAGtGGAGGCGTAATGATCTACTTTGATCGCATTGAGGTGGTAAACTACCTTGTTCCCACAGCagTTTATGGCATTGTGAGAAACTTCACTGCAGACTACGACAAAGCTCTGATTTTCAACAAGGTGCACCATGAGCTGAATCAGTTCTGTAGTGTGCACACACTTCAGGAGGTCTACATAGGTCTATTTGATCAAATAGATGAGAATCTTAAGCTCACACTGCAGGAGGATCTAAACGGCATGGCCCCCGGACTCATCATTCAGGCGGTCCGTGTCACCAAACCAAACATTCCAGAAAGCATTCGCAGGAACTATGAACTAATgGAGAGCGAGAGAACAAAGTTACTGATTGCAGCTCAGACTCAGAAGGTTGTAGAGAAGGAGGCAGAAACGGAGAGGAAAAAGGCTGTGATTGAGGCAGAGAAGGTGGCTCAGGtggctgaaataaaatttgGCCAGAAAGTTAtggaaaaagaaacagagaaaaagatCTCCGAAATTGAAGACAGCGCTTTCCTTGCTAGACAGAAAGCAAAAGCAGATGCAGAGTTTTACACCGCACAGAGAGCAGCCGAGGCCAATAAGCTAAAACTGACCCCTGAATATCTCACGTTGATGAAATTTAAGGCAATAGCGGCTAATAGTAAGATTTACTTTGGAAGTGAGATCCCGCACATGTTCATGGACACGGGACCAGGAGGCTCCTCCTCGGCTGCTTCCAAAGCCATAGACGCCCTCTCGGAGGGCATACTGGACTTGGAATGACGACAGATGTTGCATTGTAGCATTGAGGATAAATTAACAGGTAATAAAGGAGACTAATGGTAAGTCCTTAGGTGTGTTGGTACAGTCAGTGCAGATGAAACAGCTAGTGAAGTGAAACGGTGCTGTACCAGTTGGACACTATACCTACAATTATACCCTGTTGAGTTGATCACAAGCCAGTGGTGGATAACTAGAGAATTACACTATTAAATAGAACAGAGTGTGGGAATGTGAAATCGGATGTACTGTAAGATTAGAACCTGCTTTGTgcatgatttaaatgttttaagatgCGTTGAGTTTGAAAACTAAAGaggcattcatttttttttttttttacattgtggaTTTTGACTGATCTACATTCAAAGACTTTTGTACCTCAGGGATTCTCTTGTTGGGTTTACAAAATTAAACACAGAATACATGCTAGATTAGGATTGTGTTCTTAACTATGTTGACATTTGAATTTTTACTGACTGAGCTGACTGTTCTTGTTTTTCGACCAAGCTGTAAAAAATTCAAAACGTATGGcaacaaaattatgaaaactttcctaattaaactattaactaaaatatttcgAGAGGTAACAGTTTATAGTCATGAAAATCCTGCAAAATCATCTGTAAAGTCGTGCGATACCAGTGTAAcatatagattttattattaaatataaaagtatagcATCATACGTAATTGTTTATCAGTTGTGTGCAGAGTTTAAGTATGGGTTAATAAGAATCTTTTCATCTTAAGCGATGTgcagtttactttaaaatgatatgCCCCATTAAACCGCACAGCACCCAGAGGAGTGCAATCGCGTATCTTCTCCAGTCGTTTTCACATTTCTGTGGATTTGGGACACTTAATTCTTTGTCATAGTCTCACCACTGACCTTTAGAAAGCAGCCTGCCCGTGGGCTGTTTCTCACTCGTGTCGTTAGTCATATTTGGGAAATGTTTGTAATTTCAGTTTTCCCTAAACTGTGGTTCTGTTAAAAAATACGAAAAAGTAGagcaaaggcttttttttttcagtgttaaaattgttataagatcatgtacagtattttattCTAGTAGCTCCAGATGTAGCTCAAGTGGATGAGTAGCTTGCTTTCTTTTGTTGTCAGGAATGTAGGCTACCTGTTTACATCCATACATGTCTAAATATGACGGCACATAACATAAACCGTTTTTTGCTGATATATGTATAGATGCCCCCAATAATTAACATCATTCctcttttttgtgcatttgaaatTATATCCTcactgttactttaaaaaggctttaatttagttttgaagGGCCATGTTTATTTGAACTTGTCATGCTTATGTCTGAGAACTGGCATGCTTTAAACACTGTAGCCGATTGTGTAATACCTTGTTCGAAACCTCAAAGACCCATCAGAGCTTCCCAAAGACTTTTACTGTTCATATCTGTGTTTTGCACGAGCACTGAATGCATGTTGAATCACTGTCTGTTTTTAGTAGGTTGTCATGGTTACAGTTTCTGTATGTATTGGgtgcataattgtttttatacagtaaagttTTCTAAAGAag

Function

symbol description
erlin2 Predicted to enable cholesterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to act upstream of or within steroid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 18. Orthologous to human ERLIN2 (ER lipid raft associated 2).

NR:

description
erlin-2 isoform X1

GO: NA

KEGG:

id description
K23341 ERLIN; erlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239690.1 True 2851 mRNA 0.40 13 12916170 12926498
XM_043239691.1 False 2795 mRNA 0.40 12 12916170 12926498

Neighbor

gene id symbol gene type direction distance location
fbp1b fbp1b,LOC107700920,LOC107718665,LOC107596168,LOC107655925,LOC107757529 coding upstream 150 12912655 ~ 12916020 (+)
ptger4b ptger4b,LOC107700922,LOC107757528,LOC107596171,LOC107596756,LOC107655926 coding upstream 23891 12886229 ~ 12892279 (+)
pxmp2 pxmp2,LOC107597355,LOC107595932,LOC107727154 coding upstream 86566 12826590 ~ 12829604 (+)
usp30 usp30,LOC107727160,LOC107741225,LOC107597278,LOC107696057,LOC100537262 coding upstream 89992 12820605 ~ 12826178 (+)
LOC122346075 LOC107654625,LOC107597279,LOC107741224,LOC107727161,LOC107696048 coding upstream 113300 12798124 ~ 12802870 (+)
ch25hl3 LOC107700893,LOC107718661,LOC107597898,LOC107596167,LOC107655924,LOC107757531,LOC100005337 coding downstream 3725 12930223 ~ 12935152 (+)
ar ar,LOC107757532,LOC107596701 coding downstream 39438 12965936 ~ 13022773 (+)
yipf6 yipf6,LOC107596694,LOC107746343,LOC107757533,LOC107596161,LOC107655918 coding downstream 125169 13051667 ~ 13056360 (+)
stard8 LOC107757534,LOC107596160,LOC107548495,LOC107746344,LOC107700913 coding downstream 139938 13066436 ~ 13107572 (+)
steep1 zgc:103697,cunhxorf56,LOC107548454,LOC107655899,LOC101478835 coding downstream 225123 13151621 ~ 13157237 (+)
G35905 NA non-coding upstream 30236 12885331 ~ 12885934 (+)
G35904 NA non-coding upstream 30886 12885005 ~ 12885284 (+)
G35903 NA non-coding upstream 33658 12882260 ~ 12882512 (+)
G35847 NA non-coding upstream 147620 12767948 ~ 12768550 (+)
LOC122345920 NA non-coding upstream 269082 12645284 ~ 12647088 (+)
G36062 NA non-coding downstream 182134 13108632 ~ 13108853 (+)
LOC122345423 NA non-coding downstream 373257 13299755 ~ 13312652 (+)
G36109 NA non-coding downstream 397535 13324033 ~ 13324383 (+)
G36140 NA non-coding downstream 593475 13519973 ~ 13521608 (+)
G36141 NA non-coding downstream 640479 13566977 ~ 13580798 (+)
LOC122346073 LOC107654625,LOC107597279,LOC107741224,LOC107696048,LOC107727161 other upstream 108819 12803789 ~ 12807351 (+)
iscu si:ch211-191d15.2,iscu,LOC107597282,LOC104937683 other upstream 210925 12703352 ~ 12705245 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other upstream 387380 12514013 ~ 12528790 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other upstream 660498 12249138 ~ 12255672 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other upstream 973060 11924228 ~ 11943110 (+)
ins ins,LOC107596207 other downstream 1057599 13984097 ~ 13985706 (+)
G36495 NA other downstream 1363922 14290420 ~ 14292500 (+)
LOC122345142 NA other downstream 1373545 14300043 ~ 14305304 (+)
LOC122345214 NA other downstream 1406525 14333023 ~ 14337765 (+)
mrpl1 LOC107663378,LOC107746869,LOC107752362,LOC107599195 other downstream 1421064 14347562 ~ 14349991 (+)

Expression


Co-expression Network