pmpca (pmpca,LOC107672556,LOC107699775,LOC107731046)


Basic Information

Item Value
gene id pmpca
gene name pmpca,LOC107672556,LOC107699775,LOC107731046
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 20071282 ~ 20075708 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239704.1
ACGTTCATGGTCAAATACAATCCAAGATGGCTGCTCACATGTCAAGATTAAGGGGCTGGAGCCGAGCGCAGAGGTATGGCATCGCAGTATGTAGACAGTACAGCAGCGGCAGCGCGTATCCCAACGTGTCCCTCTCCACACCGTTACCCGGGATCCCCAAACCGGTCTTTGCCTCCGTGGACGGCCACGAGAAATACGAGACTAAAATCACCACCTTAGAAAACGGACTCAAAGTCGCATCTCAGAATAAATTCGGTCAATTCTGTACAGTTGGAAttttagtaaactCAGGCTCACGCCATGAAGCAAAATATCCCAGTGGAATTGCACACTTTTTGGAAAAGCTGTCATTTTCTTCTACAGCCCACTTTGGAAGTAAAGACGAAATTCTCCTAACACTTGAAAAACACGGAGGCATATGTGactgccaaacatccagGGACACAACAATGTATGCCGTTTCAGCTGAAGTTAAAGGTCTGGATACTGTAGTGAGCCTCCTGTCAGATGCGGTGCTACAGCCACGTTTATTAGATGAGGAGATTGAGATGACTAGAATGGCTGTTCGGTTTGAATTGGAGGATCTGAACATGAGACCTGACCCAGAGCCTTTACTAACAGAAATGATTCATGCTGCTGCTTACAGAGGCAACACTGTGGGTTTGCCTCGGTTCTGCCCTGCcgaaaatgttgagaaaatcgACAGGAAGCTGCTTCATAAGTACCTACAGAGCTATTACTGTCCGGAGCGCATGGTGCTGGCTGGGGTTGGGATTGAACACGAGCAGCTTGTGCAGTGTGCCAGAAAGTATCTCCTAAATGTTAAACCGGTATGGGGTGCGAGCACGCCTGCCAACGTCGACCAGTCTGTAGCACAGTACACGGGCGGAATAGTTAAGATGGTGAAGGACATGTCAGATGTGAGTTTGGGACCAACGCCCATTCCTGAACTAACACACATCATGATTGGGCTGCAGAGCTGTTCCTTTTTGGAGGATGACTTCATCCCCTTTGCGGTCCTCAATATGATGATGGGAGGCGGGGGATCCTTCTCTGCTGGAGGGCCCGGAAAAGGCATGTTCACCCGTCTCTACCTTAATGTGCTCAACAGGCACCACTGGATGTACAATGCCACTTCATACCACCACAGCTATGAAGATAGTGGTCTGCTTTGTATCCATGCAAGCGCAGACCCTAGACAGgtGCGAGAAATGGTGGAGATCATTACGAGGGAGTTCATTCAGATGACTGGGACAGCAGGAGAAATGGAGCTAGAGAGAGCCAAGACACAACTGAAATCCATGCTCATGATGAACCTAGAGTCACGACCGGTCATCTTTGAAGATGTAGGTCGACAAGTACTTGCGACAGGAAAGAGGAAGCTGCCACACGAGCTTTGTGAGCTCATCAGTAACGTTACAGCCAGTGACATCAAGAGAGTTGCAACGAAAATGTTGCGCAGTAAACCTGCGGTGGCAGCGCTGGGGGATCTGACAGAGCTGCCCTCATACGAGGACATTCAAGCCGCTCTCTCTAGTAAAGACGGACGCCTGCCCCGCATATACCGCCTGTTCCGGTAGAGGACCGACGGCTGGCTCCATCTAGAGGCAAATATAAGGACTGACCCAAAATTATTATTCTGGACTGGAATTTAAGTGCAATGCTTAGACTGtgattgcatttcatttataaaacatttaaaacattagtttAAACCAATAGTCGAcccaaaaaatgtcaatttaatcACCCTCGTGTAATTTAAAAACCGTAGGACTTTCTGtcgtggaacataaaagaacacatttttgtCTATACAAATGTAAGTGGGTTATGTAACGggtttgctatttttaaaatatcatcttttctGTTATGCAGAAGAAaggtttgtaatgacatgagggtgtGCAAATGACAGATCTGAAATTGGCTGAGTTTGTTCACAAACCAGTGCGTTATTTTGCATTACTTTGTTCAATTCACCATgtgtttaaagtaaattaatgtgTTAATCTCACATGTCTATCTTAATTGGCTCGATAAGTAGACTTCTCCATGCCATCTTTTTTCCACATTTCTGCATTGTTGTTTATAGGCTGCTTTTCTATGTAAAACTGGGCAAACTCAAATGATATTTCACACATCACGTACTGTTTTTCAGAAAGCTCTACCAAACCCTTATGCTTTAGTTagtacattaaaatgaacagaatgaCACAAACTGTATGGTCTACCACTTATCCTAGCTGTAAAACACCCATTTTCAACCTCTGATCACGAACTAAGAGTTGGTTTGCCAGATTAATGTATGTCTTTTTACCGGTTTGTATTGGATTAccctacaaaaatatatttatttccttgTACTTCATCAGTACAAGTTTAGtgttccatttttttccccctaccTATTAAGGCAATGGTTGAATCTTTCATGAGCCCTCacgtttcctttttaaaaaataaaataaaattaaatcttga

Function

symbol description
pmpca Predicted to enable metal ion binding activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; anterior neural keel; head; immature eye; and optic tectum. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 2. Orthologous to human PMPCA (peptidase, mitochondrial processing subunit alpha).

NR:

description
mitochondrial-processing peptidase subunit alpha-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01412 PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239704.1 True 2487 mRNA 0.44 13 20071282 20075708

Neighbor

gene id symbol gene type direction distance location
ptrh1 ptrh1 coding downstream 10085 20058275 ~ 20061197 (-)
cfap157 cfap157,LOC107587652,LOC107672550,LOC107731015 coding downstream 31113 20035492 ~ 20040169 (-)
LOC122345820 LOC107720235,LOC107699702,LOC107587551,LOC107756287,LOC107567124 coding downstream 308174 19759722 ~ 19763108 (-)
mymk tmem8c,LOC107587553,LOC107699700,LOC107672546,LOC107720238,LOC107756286,LOC107567143 coding downstream 331005 19738248 ~ 19740277 (-)
slc2a8 slc2a8,LOC107720220,LOC107699761,LOC107756328,LOC107672579 coding downstream 344726 19721746 ~ 19726556 (-)
ptgs1 ptgs1,LOC107720239,LOC107699776,LOC107672577,LOC107587657,LOC107731054,LOC108255976 coding upstream 19761 20095469 ~ 20109238 (-)
zgc:101858 zgc:101858,LOC107740831,LOC107699707,LOC107552635,LOC103359842 coding upstream 52179 20127887 ~ 20130221 (-)
ppil3 ppil3 coding upstream 54751 20130459 ~ 20131947 (-)
lrrc8ab lrrc8ab,LOC107699779,LOC107552633,LOC107740800,LOC107731052,LOC107587658,LOC107672572,LOC108423682 coding upstream 56476 20132184 ~ 20138436 (-)
olfm1a olfm1a,LOC107699781,LOC107552636,LOC107587661,LOC107672574,LOC108423683 coding upstream 96535 20172243 ~ 20185023 (-)
G38019 NA non-coding downstream 114620 19956428 ~ 19956662 (-)
G37928 NA non-coding downstream 367597 19703420 ~ 19703685 (-)
G37926 NA non-coding downstream 368939 19702069 ~ 19702343 (-)
G37877 NA non-coding downstream 561000 19505921 ~ 19510282 (-)
G37801 NA non-coding downstream 784434 19286627 ~ 19286848 (-)
G38147 NA non-coding upstream 80073 20155781 ~ 20160794 (-)
G38156 NA non-coding upstream 200960 20276668 ~ 20279101 (-)
G38158 NA non-coding upstream 208915 20284623 ~ 20286229 (-)
G38161 NA non-coding upstream 221600 20297308 ~ 20677930 (-)
LOC122345854 NA non-coding upstream 583386 20659094 ~ 20659471 (-)
G38058 NA other downstream 15484 20051659 ~ 20055798 (-)
kcnt1b LOC107720246,LOC107699766,LOC107672542 other downstream 135706 19865019 ~ 19935576 (-)
mtx3 cmya5,mtx3,LOC107699728,LOC107703257,LOC107720274,LOC107756304,LOC107555495,LOC107756305,LOC107720223,LOC107703259 other downstream 887304 19175463 ~ 19183978 (-)
LOC122344738 acsl1b,LOC107571490,LOC107678619,LOC107758469,LOC107552354,LOC108274927 other downstream 2720902 17346469 ~ 17350380 (-)
LOC122345693 NA other downstream 3211351 16787809 ~ 16859931 (-)
G38140 si:ch211-236k19.4,LOC107552622,LOC107740829,LOC107699705,LOC107731026,LOC107672535,LOC107587659 other upstream 49881 20125589 ~ 20127390 (-)
LOC122345844 ppil3 other upstream 319023 20394731 ~ 20396734 (-)
LOC122345723 LOC107665045,LOC107595503,LOC107688632,LOC107731048,LOC107740809,LOC107740824 other upstream 830335 20906043 ~ 20936097 (-)
G38359 NA other upstream 1288530 21364238 ~ 21369048 (-)
G38355 abr,LOC107665039,LOC107595513,LOC107712163 other upstream 1536980 21612688 ~ 21619583 (-)

Expression


Co-expression Network