gja2 (cx39.9,LOC107597224,LOC107687660,LOC107747814,LOC107732602,LOC107680361,LOC107592390)


Basic Information

Item Value
gene id gja2
gene name cx39.9,LOC107597224,LOC107687660,LOC107747814,LOC107732602,LOC107680361,LOC107592390
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11189333 ~ 11192258 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239712.1
ATGGGTCAGTTCTCTTTCCGTATGAGCTAGTGTTGGAGTACAGAAGAAAGTGTATGCATGACAGAAGTAGTACAGCATTGCTTCCAGACTTGTAGACTTATTACTATTTATGTATGAGGGGATCATTCTAACGTTGGACTTCTAAGAAAGGTGGGCACGCAATAGTAATGGGAGACTGGAACTCTCTTGGGAAGCTTCTGGAAAGCGCCCAGGAACACTCCACGGTGGTGGGCAAAGTCTGGCTCACCGTACTCTTCATCTTCCGCATCTTGGTGCTCGGCGCTGCTGCAGAGAAGGTTTGGGGCGATGAGCAGTCCGGTTTCACCTGCGACACCAAACAACCTGGTTGCCAGAACGTCTGCTATGATATAACCTTCCCGATCTCTCATATTCGATTCTGGGTGCTTCAGATCATCTTCATCTCCACACCGACGCTAATCTATCTCGGCCACATCCTGCACCTGGTGCGCATGGagcagaaacaaaaaagaaacgaGACAGGCGGGATGGACAAACAGGCacttttgagcaccaaatctgGAAAAGGTCCTATACGTGACGAACAGGGGAAGATCCGTCTGCAGGGAGTCTTGCTACGCACCTATGTCTTCAACATCATCTTCAAAACATTGTTTGAGGTGGGCTTCCTTGTGGCACAGTACTTCCTGTACGGATTCGAGCTCAAGCCACTGTACACCTGCAACAGATGGCCCTGTCCCAACACAGTCAACTGCTACATCTCACGACCTACAGAAAAAACCATCTTCATCATATTTATGTTGGCCGTGGCCTGTGTTTCTCTGCTGCTCAACTTAATAGAGATGTACCACCTGGGCTTCACCAAATGTCGCCAGGGTCTCCGATACAGGCGTTCTCATTCCGTCTGCGACACTGAATCTAAAGCGCCCAGCGAGGATGCGGTGGTTCCGTTTGTGCCAAACTACCCGTATTTTCCACCTCACGCATCGCCTCCGGCTCCCTTTCCCACAGAGCCACATTTTAACCTCTCAGAACCCGATGGAACCTTCCCACCACACGGCAGCCGCTCTGTTTACAAGCAGAACCGTGAGAACATGGCCGTGGAGCGCAGCGGGAAACCGGACGCTGCAGATGTCAAATCCAGCAAAACAGCAAATTCCGTCCCCGGATCGCCGAGCCAGCAGCGCAGGCCCAGCCATTCGAGTCGATACAGCAACAACAAGACCAGGATGGACGACCTCAAAATCTGAGCAGACGAAGACACCCTCGCTGATTGCTGAACACACAAGAGattccctctttctctcactgGCCCTGAGCGCATGACGAGAATAAAAGTGTCATCTAGAGTGACAGCAGAA

Function

NR:

description
PREDICTED: gap junction alpha-3 protein

GO:

id name namespace
GO:0010644 cell communication by electrical coupling biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239712.1 True 1340 mRNA 0.51 2 11189333 11192258

Neighbor

gene id symbol gene type direction distance location
ercc6l ercc6l,LOC107687665,LOC107726361,LOC107592361 coding downstream 118564 11064771 ~ 11070769 (-)
ctdnep1a ctdnep1,LOC107672750,LOC107744461,LOC107599947,LOC107687669,LOC106577558 coding downstream 170491 11013727 ~ 11018842 (-)
gabarapa gabarapa,gabarap,LOC107687670,LOC107744462,LOC107592288,LOC107599946,LOC107726389 coding downstream 176923 11010320 ~ 11012410 (-)
gps2 gps2,LOC107687671,LOC107726390,LOC107592289,LOC107672761 coding downstream 179381 11004834 ~ 11009952 (-)
tp53 LOC107744460,LOC107687672,LOC107599945,LOC107672786,LOC107726386 coding downstream 186156 10992741 ~ 11003177 (-)
gjb1a cx27.5,LOC107597344,LOC107687661,LOC107592389,LOC107680359,LOC107732608,LOC105893222 coding upstream 1211 11193469 ~ 11197204 (-)
kat5a kat5a,LOC107597226,LOC107592273,LOC107680373,LOC107732605,LOC107687657 coding upstream 12220 11204478 ~ 11209441 (-)
si:dkey-125i10.3 NA coding upstream 138731 11330989 ~ 11336101 (-)
agtr2 LOC107672423,LOC107597233,LOC107733228,LOC107680405,LOC107592269,LOC107732613 coding upstream 145608 11337866 ~ 11345096 (-)
tpcn1 tpcn1,LOC107732611,LOC107733226,LOC107672457,LOC107680394 coding upstream 156370 11348628 ~ 11361935 (-)
G35479 LOC107687695,LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107687664 non-coding downstream 38561 11145973 ~ 11150772 (-)
G35441 LOC107747818,LOC107680407,LOC107687663 non-coding downstream 64986 11102653 ~ 11124347 (-)
G35467 NA non-coding downstream 70106 11115010 ~ 11119227 (-)
G35423 NA non-coding downstream 124886 11062900 ~ 11064447 (-)
G35422 map7d2a,LOC107754729,LOC107687666,LOC107599951,LOC107726367 non-coding downstream 126445 11060938 ~ 11062888 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding upstream 19781 11212039 ~ 11213737 (-)
G35499 NA non-coding upstream 27710 11219968 ~ 11220891 (-)
G35450 NA non-coding upstream 56941 11249199 ~ 11250006 (-)
G35434 NA non-coding upstream 112023 11304281 ~ 11330366 (-)
G35522 NA non-coding upstream 119291 11311549 ~ 11312830 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 220215 10960311 ~ 10969118 (-)
G35384 NA other downstream 263170 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 315269 10868364 ~ 10874064 (-)
G35122 NA other downstream 727624 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 853990 10324959 ~ 10335343 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other upstream 227697 11419955 ~ 11467122 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 391522 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 603398 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 973145 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 1125545 12317803 ~ 12319685 (-)

Expression


Co-expression Network