CI01000004_16221780_16232426 (PSMB5)


Basic Information

Item Value
gene id CI01000004_16221780_16232426
gene name PSMB5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16221780 ~ 16232940 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16221780_16232426.mRNA
ATGGCGCTGTCTAGTGTATTGAGGAATGAGTGTGCGGATTTCTCAGATCGCTTTGACCGGTCTTTTGCGCACGGTTGTGGCATCAACCAGACGGATCTCGGCTTTGGAGACGCACTGAACTTTGCCGTGAAACCACTGGGTGAAGAGGATGAACCGGAGAGAAAAATCGAGTTTCTTCACGGCACGACCACCTTAGCATTCAAATTTCAGCATGGCGTCATTGTGGCTGTGGATTCCAGAGCGACAGCCGGCTCTTATATCGCTTCACAGACTGTGAAGAAGGTGATTGAAATCAACCCGTACCTGCTCGGCACTATGGCAGGAGGAGCCGCGGACTGCAGCTTCTGGGAGCGCCTGCTGGCCAGACAGTGCCGCATCTACGAGCTGCGCAACAAAGAGCGCATTTCTGTGGCAGCGGCCTCCAAGCTACTGGCTAACATGGTGTATCAGTACAAAGGCATGGGCCTCAGCATGGGCACGATGGTCTGCGGCTGGGACAAAAGAGGGCCAGAGGCCCTGCACAGTGACACAGTAATGGGAAATCAATATGCCGGTGACTGTGGGCCAGGAGGGAGCAACACCATGATGGACGCGGCTCTCAGCCAGGGCAATCGGGTCGCATGCAAAATCCTGTCAGCTCGATCAATTGGGGTTTATGCGGCGACACAGGCTAGTGTGGCCCCAAAAAAACAACCTTTGCCTGGCAGGCAAACAAAACTACGTGGTCTCTACTACGTGGACTCAGAGGGCAACCGTGTGTGCGGAGACCTGTTCGCAGTTGGTTCGGGGTCCATGTACGCCTACGGTGTCGTCGACAGCGGCCTTCGCTACGACATGACCATAGAGGAAGCCTGCGACTTGGGCCGCCGCGCCATCTACCAAGCTACCTACCGTGACGCCTACAGCGGAGGCCAAGTCAACCTCTACCGCGTCCATGGCGAGGGCTGGGAAAGGGTCTCTCAGGAAGACGTGCTTCAGCTGCACCTTAAATACCAGAGCGAGAAAGCATAGAGGGAGTGGTTGGGTGGAGAAAAGGGATGAGGGAAGAGGCCACAGCGTCAATTGAGTTTCAAAAGGAAGGGTGAGACCAGTCGGGCAAAGAACGAATAGCAGATTAGCGATATAACCTGAAAGGCACTTCAGTTAACTTAATGAAATCAAATCTGCTTCCAGGAAAGTTAATGCCAACTCTTTTGTAAGAGCTGGCTCGTCTGCGCATGAGAAACGCAAGCAAAGCTGTCTCTCTGTTCCTCTCATCTCTTTCTCTTGAAGTTAGATCAATTTCCGTTATTTCTCATGTATGTTATTCGTCAAGTTTTCAGCCACAGTTTCAGTAGTATTACAACCCCATCCATTGCAGTTTCACTTGTTGTTTGTGATTATAAAATAAGGGGGCGCTGTATCCCAATGGACACGATGACAAGCCAAAACTCCAGTTGGCCAGATCTCGCTGAGTGGGAGTGGGCTTCTGTTCTTCTCATCTCACATGTATCTGCAGTTACCACAGTTACTAACACTATTCTCA

Function

symbol description
psmb5 Predicted to enable endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human PSMB5 (proteasome 20S subunit beta 5).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02737 PSMB5; 20S proteasome subunit beta 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16221780_16232426.mRNA True 1525 mRNA 0.52 4 16221780 16232940

Neighbor

gene id symbol gene type direction distance location
CI01000004_16217935_16218580 NA coding upstream 3200 16217853 ~ 16218580 (+)
CI01000004_16138496_16143438 NA coding upstream 77663 16138496 ~ 16144117 (+)
CI01000004_16117960_16125599 DHRS1 coding upstream 95906 16117884 ~ 16125874 (+)
CI01000004_16090188_16090874 NA coding upstream 130852 16089426 ~ 16090928 (+)
CI01000004_16037124_16044487 MMP14, MMP14A, MMP14B, MT1-MMP coding upstream 177217 16037124 ~ 16044563 (+)
CI01000004_16346680_16401924 NA coding downstream 113740 16346680 ~ 16401924 (+)
CI01000004_16407140_16438873 NA coding downstream 174045 16406985 ~ 16439250 (+)
CI01000004_16467711_16471121 NA coding downstream 234771 16467711 ~ 16471507 (+)
CI01000004_16490931_16555397 CARMIL3, LRRC16B coding downstream 257991 16490931 ~ 16555993 (+)
CI01000004_16567132_16570668 NA coding downstream 334192 16567132 ~ 16571368 (+)
G34266 NA non-coding upstream 40931 16180508 ~ 16180849 (+)
G33830 NA non-coding upstream 60782 16158712 ~ 16160998 (+)
G34229 NA non-coding upstream 202291 16019263 ~ 16019489 (+)
G34228 NA non-coding upstream 206674 16014906 ~ 16015106 (+)
G34216 NA non-coding upstream 293030 15928501 ~ 15928750 (+)
G34297 NA non-coding downstream 68293 16301233 ~ 16309306 (+)
G34322 NA non-coding downstream 215906 16448846 ~ 16449090 (+)
G34323 NA non-coding downstream 216740 16449680 ~ 16455626 (+)
G34330 NA non-coding downstream 239067 16472007 ~ 16472233 (+)
G34277 NA non-coding downstream 408402 16641342 ~ 16646222 (+)
G33815 NA other upstream 155316 16063415 ~ 16066464 (+)
G34220 NA other upstream 281830 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1129811 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2184880 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3566069 12646838 ~ 12652570 (+)
G34400 NA other downstream 744388 16971995 ~ 17025976 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015754 psmb5 coding NC_007113.7 CM002886.2 38373272 ~ 38392575 (+)
rainbow trout (Oncorhynchus mykiss) G2218316 LOC106584215 non-coding NC_050570.1 CM025857.1 27186575 ~ 27196779 (+)