ctdnep1a (ctdnep1,LOC107672750,LOC107744461,LOC107599947,LOC107687669,LOC106577558)


Basic Information

Item Value
gene id ctdnep1a
gene name ctdnep1,LOC107672750,LOC107744461,LOC107599947,LOC107687669,LOC106577558
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11013727 ~ 11018842 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239734.1
ttgtttatttatatatggcACAGCTCAACACATGGTCTTCTATTATGTCAGATGAAAGCACAGTTAGTATAGTTTGACAGTTTGTGAGTCTCAGAACCCCTGTCCTCGTTCTTCTCTTGACCCAGCTTCACCGAGGACACGTTTGTTGTTTCTCGGAAGTGACGAAACCAAAGTACTGATGGCGGCTCACAGTTTGCTCCCGGATATGTACTGAAACGAATTTGATGGCGTCTGATTGGACTTTTTGCTTACTTGGCCGTTTGTCCGAAGCCCCGAGATTAACGTCGAACCTGTCGAGCGCTCGAGTCGCCATTCCGAGGAGGGACGGTCCGCTCTAGAGCCGGTTAGTTCCAGAGCTAGCTGCCTTGCCAATGAAATACAAGTCCAGTTAGCCTGCGTTCGCAGgggtttgtttgtgtgcgtgGCTGCACACTTTGAGACGTTTGACGTTTTAGCAGTTTTGTGTCACTGGCTGGTCCAAGTGCAGCAGAGTTTTTTGGCTTCTGTCGTTTGGCTGGCCTCGCTTGCGttactttaaaagcaaagaaTCGGCGGGAAGTGGTTAGCCGACCTGATTAGCTGTAGCCGTAGTTCCCAGCTCTTCTGAAGTCATTGGTCTCTAGTGGATAGTGTGAGTCTCTTCTATGATTCACCGTTGCGCTGTTCGTCGACTGTCAGCATGTTGAAGACACGTCAGTGTTTACTCGGGATTCGCACTTTTCTTGGAGTGACGTCTAGAATATGGAGTTTCATTTTATACATCCTCAGGAAGCATCTACGAACGATAATCCAGTACCAAACAGTGCGTTATGACACATTACCTCTCTCCCCTATTTCCAGAAACAGACTCAATGCGGTGAAGAGGAAGATACTGGTGTTGGATCTGGATGAGACTTTAATTCATTCTCACCATGATGGCGTCCTTAGACCTACAGTGAGGCCTGGTACACCGCCAGACTTTATCCTCAAGGTGGTAATAGACAAACACCCAGTCAGGTTTTTTGTCCATAAAAGGCCACACGTTGACTTCTTTCTAGAAGTGGTTAGTCAGTGGTATGAGCTGGTAGTATTTACAGCTAGTATGGAGATATATGGATCGGCTGTAGCAGATAAGTTGGATAACAACAGGGATATCCTCAAAAGAAGATACTACAGACAGCACTGTACTTTGGATTTAGGGAGCTACATAAAAGATCTGTCTGTAGTACACGGTGATCTCTCCAGTATAGTGATTCTGGACAATTCGCCTGGAGCGTATCGAAGTCACCCAGACAATGCAATACCTATAAAGTCATGGTTCAGTGACCCAAGCGACACAGCACTTCTTAACCTGCTCCCAATGTTGGATGCATTGAgGTTTACCTCAGATGTTCGCTCCGTCCTCAGTCGAAATCTCCACCAGCATCGGCTTTGGTGATCGTATGTTTCGGGGCCGGTCTCTCTTCTGGTCGCCATCTGGGTTTTTACACGGCTCTGCCCGCTAAGTGTTAGCCTCTCCTGCGCTGGAGCTGTCTGCCTCTCGTCATTGTGAGCTCCCGTTAGTCATATGGACTCCTCTGAGGAAGTGCTAAAAGAAGACACTGGAGGACAGAAAGGAGAGACACATGATGAAGAAGCGATTACAAATAAACTCATGGCAAATGGAGAGGccagcatttttttcttgtatttttttccttaaaaaatgGAAACTCTGCCTTACAGTTGTTGCATTCAACATGTGCATGATGAAGTGTTTCTGAGTGAATGGGGGAGAATGCTTCtgatttttcctttctttttttggggCAAATGAATATGTGATCTACCAGTCACTTCATAAGCACTTATTCCCCCCTTCCTCAAcgtctgtgtttgtctttttaGTTTCGTAAGACCTTGGCACAAATGGTCACATGGTCTTATCTACCCATTCTCTCTTTAAGATTCTGTccttctctcctttttttttttgttttttttggtctgcCATCTCAGGTATCTGGGCCTCTTCTCTATGTTAAGAGCTGAGAGCTGTTAATACCGTTGTACTAATAGTATACTGTGGTAGAGATAAATGTACGATCAGCAGGAAAGAAAACTACAGTTCATTATTACAGCTTATGGTattaatttctgtgtttttaaatggctTAAATGTGAAACCTCTGGTTAAATCAGAGAGGTTTTCAAGGACACGATTTTAGATGCTCTTCGATATGGATACATCAGCCACTGAGAAAGACACTGAGCAACAAGGACTCTTctataacagaaaaataaaatggagcCTTTTGTCAACAACTGAAA

Function

symbol description
ctdnep1 Enables protein serine/threonine phosphatase activity. Involved in several processes, including positive regulation of triglyceride biosynthetic process; protein dephosphorylation; and protein localization to nucleus. Located in endoplasmic reticulum membrane; lipid droplet; and nuclear membrane. Part of Nem1-Spo7 phosphatase complex.

NR:

description
PREDICTED: CTD nuclear envelope phosphatase 1A isoform X2

GO:

id name namespace
GO:0006998 nuclear envelope organization biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17617 CTDNEP1, DULLARD, NEM1; CTD nuclear envelope phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239734.1 True 2289 mRNA 0.44 8 11013727 11018842

Neighbor

gene id symbol gene type direction distance location
gabarapa gabarapa,gabarap,LOC107687670,LOC107744462,LOC107592288,LOC107599946,LOC107726389 coding downstream 1317 11010320 ~ 11012410 (-)
gps2 gps2,LOC107687671,LOC107726390,LOC107592289,LOC107672761 coding downstream 3775 11004834 ~ 11009952 (-)
tp53 LOC107744460,LOC107687672,LOC107599945,LOC107672786,LOC107726386 coding downstream 10550 10992741 ~ 11003177 (-)
si:ch211-114c12.2 si:ch211-114c12.2,LOC107744458,LOC107687673,LOC107592292,LOC107672733,LOC107726373,LOC107599944 coding downstream 33801 10973213 ~ 10979926 (-)
mpdu1a LOC107744454,LOC107687704,LOC107592396,LOC107726364,LOC107599967,LOC107672744 coding downstream 55756 10953770 ~ 10957971 (-)
ercc6l ercc6l,LOC107687665,LOC107726361,LOC107592361 coding upstream 45929 11064771 ~ 11070769 (-)
gja2 cx39.9,LOC107597224,LOC107687660,LOC107747814,LOC107732602,LOC107680361,LOC107592390 coding upstream 170491 11189333 ~ 11192258 (-)
gjb1a cx27.5,LOC107597344,LOC107687661,LOC107592389,LOC107680359,LOC107732608,LOC105893222 coding upstream 174627 11193469 ~ 11197204 (-)
kat5a kat5a,LOC107597226,LOC107592273,LOC107680373,LOC107732605,LOC107687657 coding upstream 185636 11204478 ~ 11209441 (-)
si:dkey-125i10.3 NA coding upstream 312147 11330989 ~ 11336101 (-)
G35388 NA non-coding downstream 74241 10938695 ~ 10939486 (-)
G35385 NA non-coding downstream 79982 10932350 ~ 10933745 (-)
LOC122346117 NA non-coding downstream 126989 10875648 ~ 10886738 (-)
G35203 NA non-coding downstream 175430 10838005 ~ 10838297 (-)
G35201 NA non-coding downstream 180132 10832858 ~ 10833595 (-)
G35410 NA non-coding upstream 19848 11038690 ~ 11039232 (-)
G35422 map7d2a,LOC107754729,LOC107687666,LOC107599951,LOC107726367 non-coding upstream 42096 11060938 ~ 11062888 (-)
G35423 NA non-coding upstream 44058 11062900 ~ 11064447 (-)
G35441 LOC107747818,LOC107680407,LOC107687663 non-coding upstream 83811 11102653 ~ 11124347 (-)
G35467 NA non-coding upstream 96168 11115010 ~ 11119227 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 44609 10960311 ~ 10969118 (-)
G35384 NA other downstream 87564 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 139663 10868364 ~ 10874064 (-)
G35122 NA other downstream 552018 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 678384 10324959 ~ 10335343 (-)
hmgn7 hmgn7,LOC107672554,LOC107756557,LOC107680402,LOC107565427,LOC107748629,LOC107597243,LOC108260037,LOC108442050 other upstream 401113 11419955 ~ 11467122 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 564938 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 776814 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 1146561 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 1298961 12317803 ~ 12319685 (-)

Expression


Co-expression Network