med22 (med22,LOC107710756,LOC107691021,LOC107596962,LOC107726295,LOC107693846,LOC107587409)


Basic Information

Item Value
gene id med22
gene name med22,LOC107710756,LOC107691021,LOC107596962,LOC107726295,LOC107693846,LOC107587409
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 6945514 ~ 6949315 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239751.1
aaaaggaTTGTGGGAAATATAACTACCGCGACGGTTGGTGATGACGCCATCCGCACGCGACAGAACAAAAGCGGGAGGCTCGTGTTTATTTGAAGAAACGATCAGAGAATGCTTGTCCACTGAGTCGAGTGAGACTGAAGAGCGCTGTTATGGCTACACAGAGAGTACTCCCACAAAGCAAAGAAACTCTTCTGCAGAACTACAATAAAAGACTCAAAGATGACATCAGGTCAATTCTAGACAATTTCACGGAAATAATCAAAACAGCAAAGGTGGAAGATGAGACTCAGGTTTCCAGGGCGACACAAGCTGAGCAGGACCACTACGAAATGCACGTGCGAGCTGCCAACATCGTGCGCGCGGGAGAGTCTCTCATGAAGCTCGTCTCAGACCTGAAGCAGTTCCTCATCCTGAATGACTTCCCCTCGGTCAACGAGGCCATCAGTCTCCGCAACCAGCAGCTGCGCACGCTGCAGGAAGAGTGCGACAAGAAGCTCATCTCCCTGCGTGATGAGATCGCCATCGACCTGTATGAGCTCGAGGAAGAGTATTACTCCTCCAGCTGTGGACAGTGGGATGGTGTTGAGTTGCCACTTTGTGAGGCCTTTCATCGGCAGGACAGTTGGGGGTCCCCTGAGACGACCTCTGATCCCTCGTGTGCCAACCCAGAGGATTCAGACCACTTGGGGACCCAGGAGTCCACGCAGTGTCACCTAAACAGCCACGGCAGCAGCACTAGCGAGCAGTCATGAAATACCGGTGGCTTCCTTCAGACCAGTTAGATTCCACAGCTAAGCTATTTGCCGTTATATAAGGCCCCATCTTAAACCTCCAGCTGCAGACTGCAAATATAGTCAACTACTTGAATTGAGGATTTGATTTTGTCCTGCAAAAATGACACTGATTTAATGCTGAGAACGTTTCTGTGAATTCCTGCACAACTGCTACATTGGAATAATGaagtgtttgtttctgtttataGGTTAAATTTAACGTCTCTTTGAGTACAATTACAGCTGTGATATACATTCATTGATctgcaaaaaatacaaattaagtgGCGTTTTGAATGCTGAAAGAAAATGAGACCTCTCTGTAATCATGCTGCATAGCTCCTCTATTTAAGTAACAAAATGCACTGTTAATTTCATTGTATGTTTCATAGTATACGTGCACTGTGATGCTCTTCAAAATGTGACTGCCAAGgaactgttctttttttttttttcatttacatgtatatatttttgttgctgTGGTACCTTAGGATAACCTTTCCTATATATGTAGTTAAAGGACATCCAAGCAAAAACCAAGAGGGAAGGAAATATGTTGTAACTCTAATAGAGGttataatattactttatttcgTTAGCAAAGTCTGTAGaataaaaataacctttaataaaa
>XM_043239753.1
aaggaTTGTGGGAAATATAACTACCGCGACGGTTGGTGATGACGCCATCCGCACGCGACAGAACAAAAGCGGGAGGCTCGTGTTTATTTGAAGAAACGATCAGAGAATGCTTGTCCACTGAGTCGAGTGAGACTGAAGAGCGCTGTTATGGCTACACAGAGAGTACTCCCACAAAGCAAAGAAACTCTTCTGCAGAACTACAATAAAAGACTCAAAGATGACATCAGGTCAATTCTAGACAATTTCACGGAAATAATCAAAACAGCAAAGGTGGAAGATGAGACTCAGGTTTCCAGGGCGACACAAGCTGAGCAGGACCACTACGAAATGCACGTGCGAGCTGCCAACATCGTGCGCGCGGGAGAGTCTCTCATGAAGCTCGTCTCAGACCTGAAGCAGTTCCTCATCCTGAATGACTTCCCCTCGGTCAACGAGGCCATCAGTCTCCGCAACCAGCAGCTGCGCACGCTGCAGGAAGAGTGCGACAAGAAGCTCATCTCCCTGCGTGATGAGATCGCCATCGACCTGTATGAGCTCGAGGAAGAGTATTACTCCTCCAGGTACAAATAGACCAGTGATCCCAAACGTGTGCAGTCACCTCTGCATTCCCTTGCTCACCAACACCATAAATACGACGCATATGTGCATCATAAGAACATAACACAGGGCGATTTATGGAGCTAAAGGTATTTTTAACTTGCACAACCTTTTATGGGCTCCGACCGGTTttcattttactaaaatatcaTCATCTAGCCATGTtggtttgctgtttgttttaattacaccATGCCATGTTGGTCACCCATATGCAATCGTATCATACCACTGTGCCTTAATAAGAGTGGCCATTCTTGCAGTTAATACAATGACTAAAGAAAGAGTACATTCTCTTTTGATCCAGTTCGGTCATGTAGTAATTTAGAGTTTTATTCCGCTCGTCATAAttctaacaaaccagacatgcTTTTAATATGGCAAACATATAGCAAAATCCATCCATATTGTCATATCCATTCATACTGTAGTCACACCAAAGACATTATCAAGCACTTTCAGTATAACTGATTTTGCACAAGAAGACCGATCTGTTATACGAGTATAAGTGCGTGTAAATATTTCCCTTCCAGGTGCCTTAAATGATTGTTTAAGAATATTTACTTGCAATCAGGATGTGTATTTAGTCTTATTAGTGGTGCTGTTTGGGTTTAATTTTTATGACATTAGTATGATATTCTGAGGTTTTAAATCAATTCAAGCTGTCTTTGAAGCACACCggtataaacattaatatttatatgagaGGAGACATTTTGGAAATAATTCtggaaagaattaaaaaaaaaaaaatctaaaggaCAATGTACCATTTGATATTGGACTGAGCACATTCATTTTGGATGCCTGAACTCAGTGATGTGCTTCGAAATTTAAAGCActttagaaaaaataatatagggTGCTGTGCGTATTGTAAAAATTACTTACTTAAAAGAATCACATTAATTTAGCTTAAGACAATCATTCAAAAAACGGAAAATCAAATGTCAAGCAACATTAATTTTGGGAGGTTtctattatattcattttttttcctctctctgttaAACTACTCAAAGTTTGTGTAAACTGGGAAAATATTTAGCTTTGAGTAACATATGTCatgttcaaaatgtaatatttatcatttatggaGTGAATTGCACTACACTGTGTTTCTTTGTGGTGACATTTTAAGCAGAAACGGTGTTGGTCACATTAGTGCCTGTTTGAAATGTGTCAGAATATttgtcagttttcttttttttttccacaaaccAACTGGTCATTtcaaatttcataaataaaccAGAGATAAAATAGA

Function

symbol description
med22 Predicted to enable transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED22 (mediator complex subunit 22).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 22 isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15139 MED22; mediator of RNA polymerase II transcription subunit 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239751.1 False 1410 mRNA 0.44 5 6945514 6949315
XM_043239753.1 True 1864 mRNA 0.38 4 6946780 6949313

Neighbor

gene id symbol gene type direction distance location
ptges ptges,LOC107710751,LOC107693847,LOC107598231,LOC107691017,LOC107726289,LOC107587481 coding downstream 23895 6917865 ~ 6921619 (-)
LOC122345680 LOC107710746 coding downstream 102787 6840718 ~ 6842727 (-)
LOC122345679 NA coding downstream 105831 6835883 ~ 6839683 (-)
LOC122344933 NA coding downstream 114687 6828115 ~ 6830827 (-)
ttll11 ttll11,LOC107700937,LOC107596909,LOC100002237,LOC107693816 coding downstream 153488 6763136 ~ 6792026 (-)
LOC122345529 surf1,LOC107726301,LOC107693844,LOC107587407,LOC107725413 coding upstream 3095 6952410 ~ 6954782 (-)
LOC122344928 LOC107691049,LOC107598263,LOC107723339 coding upstream 70212 7019527 ~ 7042597 (-)
lmo4a lmo4a,LOC107691029,LOC107723366,LOC107597048,LOC107587399 coding upstream 140850 7090165 ~ 7102731 (-)
ccn1l1 cyr61l1,LOC107723346,LOC107691050,LOC107740969,LOC107693831,LOC107587477 coding upstream 156358 7105673 ~ 7109832 (-)
rpl12 rpl12,LOC107587392 coding upstream 172094 7121409 ~ 7123998 (-)
G33768 NA non-coding downstream 87131 6835959 ~ 6858383 (-)
G33738 NA non-coding downstream 97709 6758909 ~ 6847805 (-)
G33683 LOC107588773 non-coding downstream 332459 6611740 ~ 6613055 (-)
G33681 NA non-coding downstream 334022 6609449 ~ 6611492 (-)
G33615 NA non-coding downstream 766843 6178172 ~ 6178671 (-)
G33791 rpl7a,LOC100194725 non-coding upstream 229 6949544 ~ 6952310 (-)
G33802 ccbl1,LOC107691018,LOC107731000,LOC107587404,LOC107596979,LOC107726298 non-coding upstream 10960 6960275 ~ 6961261 (-)
G33803 NA non-coding upstream 14640 6963955 ~ 6964175 (-)
G33804 NA non-coding upstream 14945 6964260 ~ 6964511 (-)
G33805 NA non-coding upstream 18412 6967727 ~ 6968241 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 2311 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 119332 6824171 ~ 6826182 (-)
G33175 NA other downstream 2322456 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 2752433 4144856 ~ 4193081 (-)
piwil2 piwil2,LOC107560971,LOC107707823,LOC107702219 other downstream 3046936 3878650 ~ 3898578 (-)
G33998 LOC108444092 other upstream 433031 7382346 ~ 7397153 (-)
LOC122345606 LOC107712378 other upstream 757655 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 769250 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 1211562 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 1462567 8411882 ~ 8414806 (-)

Expression


Co-expression Network