mtmr2 (mtmr2,LOC107747813,LOC107597225,LOC107592277,LOC107732604,LOC107680397,LOC107687656)


Basic Information

Item Value
gene id mtmr2
gene name mtmr2,LOC107747813,LOC107597225,LOC107592277,LOC107732604,LOC107680397,LOC107687656
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11198211 ~ 11204226 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239778.1
CACTGCCAGCCCCACCTAGAGGAATTCTGGGAAGACATGGCAGCTTCcgctgtttgtgtttgctgaGTTTCCGCACTGAACAGTCACTAAAACAGAGTTAAGTTTACTTGAAAACTTTATCGGTGGCGCGGTTCGGGATGGAGGAGAGCGGCAGTGTGGACAGTGTGGAGTCTTTGTGCAGCTCTGCCACGACGCGCTCAGACCGCTCCAGTGGCACCAGGATTTCAGATACAGAGCTGCGGAGTAAGGGAAAAGCTATTGAAAAGGTCTACAAAGACCCCAGTAAAGGCGAACTTCCTCTTCTGCCAGGGGAACTGGTTCAGGATTCCGGTATTTGTGCTAAAGACGTGACTTACATTTGTCCGTTCATTGGTCCTGTTAGAGGATCTCTGACCGTCACTAACTACAGACTTTTCTTCAGAAGCACTGACAGGGAGCCGGTGTTTGGGCTAGATCTACCCCTGGGAGTTGTGAGCAGAGTAGAGAAGATTGGAACAGCAACTAGCAGAGGAGATGTCTCGTATGGTCTTGTCTGCaagGATATGAGGAACCTACGTTTTGTGCATAAGGAGCCGGAGGACTCACTAAAGAAGTCAGTGTTTGAGGTTCTGATGAAGTTTGCTTTTCCAGTGTCAAACAACATGTCACTCTTTGCATTTGAGTATAAGCAGGTGTTTCCTGAGAATGGATGGAAGGTGTATGATCCGCTGGCTGAATACAAGAGACAGGGTCTTCCAAACGAGAGCTGGAGGATCTCAAAAGTAAATGATCACTACGAGCTGTGTGATTCATACCCAGCAGCTCTATTTGTCCCAGTAACCATTACTGATGAGGAACTGCGACGCGTCTCCGGCTTTAGGGCTAAAGGACGCTTTCCGGTGTTGTCCTGGATCCACCCAGAGAGTCAGGCCGCTGTGGTTCGTGCCAGTCAACCGATGGTGGGCCAGAACAGTCGCCGCTGCAAAGAAGATGAGAAGCTCCTTCAGGCCATTATGGACGCAAACGCTCAATCACACAAACTGTTCATATTTGATGCCAGACCAAGTGTGAATGCTGCAGCTAACAAGATGAAAGGTGGTGGGTTTGAGAGTGAGGATGCTTATCAGAACGCTGAACTGGTATTTCTGGATATCCACAACATTCATGTAATGCGCGAGTCGCTAAGAAAACTGAAGGAGGTTGTCTATCCCAACATTGAGGAATCTCACTGGCTTTCCAATCTCGAGTCCACCCACTGGTTGGAGCACATTAAGTTGATTCTGGCTGGAGCTTTAAGGATAGCCGATAAAGTAGAGTCTGGGAAGACCTCGGTGGTGGTTCATTGCAGTGACGGCTGGGACAGAACTCCTCAGCTGACCTCACTGGCCCTGATAATGCTGGACTCTCATTACAGAACCATACGAGGCTTTCAGATTCTTTTGGAGAAAGAGTGGCTCAGCTTCGGTCACCGCTTCCAACAGcgagtggGTCACGGTGATAAGAATCACACAGATGCCGATCGTTCACCAATCTTCCTGCAGTTTATTGACTGTGTTTGGCAGATGACAAGACAGTTTCCTGCAGCTTTCGAGTTCAATGAGTATTTCCTCATAACAATACTGGATCACCTCTACAGCTGTCTTTTTGGCACATTTTTGTGTAACAGTGAACAGCAAAGACTTAAAGAGGAGGTCCCAAAGCGCACTGTGTCTCTATGGTCGTTTGTGAACAGCCAGCTAGAAGAGTTTGTGAATCCGCTGTATGTACATTATCCCTCACACGTGCTCTTCCCCACCGTTGGTATACGACACCTCCAGCTCTGGGTCACCTACTATATACGCTGGAATCCTCGCATGAAACCACAGgagCCTGTCCATCAGCGCTACAAAGAGCTGCTAGCAAAACGGGCAGAGCTTCAGAAGAGGGTGGAAGAGCTGCAGCGCGAAGCGGCCAATCGTACGGCCTCGTCATCCACCGAGAGGGCGGGGTCTCCCACACGCTCCATCACACCTGTGCAGACCTTCGTTTAGGCTTTGAGGAATGTAGATGCCCACATGGTTCTCATGTTACTTGCAGTGATGCACAGCTCATGTAAATTCATACACTAACATTCACCTCGCTGCTACCAGCTGGCTGGATGGATGGAAGAAGCTTTTACTCACTAAAACTGTTTCGTACtagtattatattaatacattaagaCTATTAAAGCACTAATACATATAAGAAGCATATTAGGGCTTGTACTGTATGAGCGGTATGTAGTAGAACTCTGCCTCTTAGCATCACATGACCAAAGCGTTGTGATGTCACTGGGATGCAGAGTGAAGTTGAGGCCAGTTTTTCAGCCTCTGGGTTTTGTGTACAGGCTTCTGTCTTTACTTGAAATTCCAACTTTCTTGGGCTTGTTTAAAATTACACTATGTAGTCATGTTATAGATATGCTCTATATCTAACTTTTGCTTATGTTAACAttattgacaaataaaatatgttgacATTGATTCAA
>XM_043239779.1
CACTGCCAGCCCCACCTAGAGGAATTCTGGGAAGACATGGCAGCTTCcgctgtttgtgtttgctgaGTTTCCGCACTGAACAGTCACTAAAACAGAGTTAAGTTTACTTGAAAACTTTATCGGTGGCGCGGTTCGGGATGGAGGAGAGCGGCAGTGTGGACAGTGTGGAGTCTTTGTGCAGCTCTGCCACGACGCGCTCAGACCGCTCCAGTGGCACCAGGATTTCAGATACAGAGCTGCGGAGTAAGGGAAAAGCTATTGAAAAGGTCTACAAAGACCCCAGTAAAGGCGAACTTCCTCTTCTGCCAGGGGAACTGGTTCAGGATTCCGCTAAAGACGTGACTTACATTTGTCCGTTCATTGGTCCTGTTAGAGGATCTCTGACCGTCACTAACTACAGACTTTTCTTCAGAAGCACTGACAGGGAGCCGGTGTTTGGGCTAGATCTACCCCTGGGAGTTGTGAGCAGAGTAGAGAAGATTGGAACAGCAACTAGCAGAGGAGATGTCTCGTATGGTCTTGTCTGCaagGATATGAGGAACCTACGTTTTGTGCATAAGGAGCCGGAGGACTCACTAAAGAAGTCAGTGTTTGAGGTTCTGATGAAGTTTGCTTTTCCAGTGTCAAACAACATGTCACTCTTTGCATTTGAGTATAAGCAGGTGTTTCCTGAGAATGGATGGAAGGTGTATGATCCGCTGGCTGAATACAAGAGACAGGGTCTTCCAAACGAGAGCTGGAGGATCTCAAAAGTAAATGATCACTACGAGCTGTGTGATTCATACCCAGCAGCTCTATTTGTCCCAGTAACCATTACTGATGAGGAACTGCGACGCGTCTCCGGCTTTAGGGCTAAAGGACGCTTTCCGGTGTTGTCCTGGATCCACCCAGAGAGTCAGGCCGCTGTGGTTCGTGCCAGTCAACCGATGGTGGGCCAGAACAGTCGCCGCTGCAAAGAAGATGAGAAGCTCCTTCAGGCCATTATGGACGCAAACGCTCAATCACACAAACTGTTCATATTTGATGCCAGACCAAGTGTGAATGCTGCAGCTAACAAGATGAAAGGTGGTGGGTTTGAGAGTGAGGATGCTTATCAGAACGCTGAACTGGTATTTCTGGATATCCACAACATTCATGTAATGCGCGAGTCGCTAAGAAAACTGAAGGAGGTTGTCTATCCCAACATTGAGGAATCTCACTGGCTTTCCAATCTCGAGTCCACCCACTGGTTGGAGCACATTAAGTTGATTCTGGCTGGAGCTTTAAGGATAGCCGATAAAGTAGAGTCTGGGAAGACCTCGGTGGTGGTTCATTGCAGTGACGGCTGGGACAGAACTCCTCAGCTGACCTCACTGGCCCTGATAATGCTGGACTCTCATTACAGAACCATACGAGGCTTTCAGATTCTTTTGGAGAAAGAGTGGCTCAGCTTCGGTCACCGCTTCCAACAGcgagtggGTCACGGTGATAAGAATCACACAGATGCCGATCGTTCACCAATCTTCCTGCAGTTTATTGACTGTGTTTGGCAGATGACAAGACAGTTTCCTGCAGCTTTCGAGTTCAATGAGTATTTCCTCATAACAATACTGGATCACCTCTACAGCTGTCTTTTTGGCACATTTTTGTGTAACAGTGAACAGCAAAGACTTAAAGAGGAGGTCCCAAAGCGCACTGTGTCTCTATGGTCGTTTGTGAACAGCCAGCTAGAAGAGTTTGTGAATCCGCTGTATGTACATTATCCCTCACACGTGCTCTTCCCCACCGTTGGTATACGACACCTCCAGCTCTGGGTCACCTACTATATACGCTGGAATCCTCGCATGAAACCACAGgagCCTGTCCATCAGCGCTACAAAGAGCTGCTAGCAAAACGGGCAGAGCTTCAGAAGAGGGTGGAAGAGCTGCAGCGCGAAGCGGCCAATCGTACGGCCTCGTCATCCACCGAGAGGGCGGGGTCTCCCACACGCTCCATCACACCTGTGCAGACCTTCGTTTAGGCTTTGAGGAATGTAGATGCCCACATGGTTCTCATGTTACTTGCAGTGATGCACAGCTCATGTAAATTCATACACTAACATTCACCTCGCTGCTACCAGCTGGCTGGATGGATGGAAGAAGCTTTTACTCACTAAAACTGTTTCGTACtagtattatattaatacattaagaCTATTAAAGCACTAATACATATAAGAAGCATATTAGGGCTTGTACTGTATGAGCGGTATGTAGTAGAACTCTGCCTCTTAGCATCACATGACCAAAGCGTTGTGATGTCACTGGGATGCAGAGTGAAGTTGAGGCCAGTTTTTCAGCCTCTGGGTTTTGTGTACAGGCTTCTGTCTTTACTTGAAATTCCAACTTTCTTGGGCTTGTTTAAAATTACACTATGTAGTCATGTTATAGATATGCTCTATATCTAACTTTTGCTTATGTTAACAttattgacaaataaaatatgttgacATTGATTCAA

Function

symbol description
mtmr2 Predicted to enable phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity; phosphatidylinositol-3-phosphatase activity; and protein tyrosine phosphatase activity. Predicted to be involved in phosphatidylinositol dephosphorylation. Predicted to act upstream of or within dephosphorylation and lipid metabolic process. Predicted to be located in cytosol. Predicted to be active in cytoplasm and membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4B1. Orthologous to human MTMR2 (myotubularin related protein 2).

NR:

description
PREDICTED: myotubularin-related protein 2 isoform X2

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18081 MTMR1_2; myotubularin-related protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239778.1 True 2488 mRNA 0.47 16 11198211 11204226
XM_043239779.1 False 2479 mRNA 0.47 16 11198211 11204226

Neighbor

gene id symbol gene type direction distance location
tbc1d8b tbc1d8b,si:dkey-110k5.6 coding upstream 11537 11170213 ~ 11186674 (+)
rnf128a rnf128a,LOC107592278,LOC107687662,LOC107732618,LOC107680400,LOC107747815 coding upstream 28659 11154539 ~ 11169552 (+)
LOC122346179 LOC107747816,LOC107597221,LOC107687664,LOC107592359,LOC107732598 coding upstream 62126 11127127 ~ 11136085 (+)
LOC122345519 LOC107747818,LOC107687663,LOC107599955,LOC107680407,LOC107726394 coding upstream 73862 11109781 ~ 11124349 (+)
LOC122345703 LOC107687703,LOC107599954,LOC107672740,LOC107747828,LOC107592360,LOC107599982,LOC107687702,LOC107747827 coding upstream 98874 11073890 ~ 11099337 (+)
fam76b fam76b,LOC107680374,LOC107597227,LOC107687655,LOC107592275 coding downstream 6150 11210376 ~ 11217745 (+)
cwc15 cwc15,LOC107597228,LOC107592276,LOC107732607,LOC107747811 coding downstream 14297 11218523 ~ 11222820 (+)
acsl4b acsl4b,LOC107747809,LOC107687654,LOC107597230,LOC107732603,LOC107680372,LOC107592357 coding downstream 19728 11223954 ~ 11232994 (+)
stag2a stag2a,LOC107680370,LOC107732619,LOC107597229,LOC107687653,LOC107592356 coding downstream 29181 11233407 ~ 11249164 (+)
cchcr1 LOC107680404,LOC107732622,LOC107747821,LOC107687693,LOC107592355 coding downstream 46399 11250625 ~ 11259480 (+)
G35267 NA non-coding upstream 10517 11187254 ~ 11187694 (+)
G35229 NA non-coding upstream 179019 10945056 ~ 11019192 (+)
G35202 NA non-coding upstream 359844 10838012 ~ 10838367 (+)
G35197 NA non-coding upstream 381910 10813457 ~ 10816301 (+)
G35081 NA non-coding upstream 650586 10547221 ~ 10547625 (+)
G35274 kat5,LOC106563454,LOC107597226 non-coding downstream 274 11204500 ~ 11209405 (+)
G35304 prps1a,LOC103031347,LOC107733231,LOC107597240,LOC107672505 non-coding downstream 178444 11382670 ~ 11387170 (+)
G35309 NA non-coding downstream 201302 11405528 ~ 11405761 (+)
G35311 NA non-coding downstream 209815 11414041 ~ 11414688 (+)
G35322 NA non-coding downstream 237313 11441539 ~ 11442411 (+)
LOC122346180 LOC107597222,LOC107680408,LOC107732624,LOC107592391,LOC107732598,LOC107687664,LOC107747817,LOC107687696 other upstream 47986 11136223 ~ 11150225 (+)
map7d2a LOC107687666,LOC107592282,LOC107599951,LOC107754729,LOC107726367,LOC107672739 other upstream 133765 11046479 ~ 11064446 (+)
senp3a senp3a,LOC107744451,LOC107687680,LOC107599939,LOC107672741,LOC107592295,LOC107726393 other upstream 264458 10926823 ~ 10933753 (+)
osbp2b si:ch211-106a19.1,LOC107687692,LOC107744438,LOC107726355,LOC107672777,LOC107592367 other upstream 462152 10717531 ~ 10736059 (+)
fam219ab fam219ab,LOC107744421,LOC107595023,LOC107673386,LOC107752501,LOC107672754,LOC107592322,LOC107673387,LOC107595025,LOC107744422,LOC107592323 other upstream 1058478 10064217 ~ 10139733 (+)
gria3a gria3a,LOC107597231,LOC107672342,LOC107732609,LOC107680378,LOC107733225,LOC107592272 other downstream 62416 11266642 ~ 11303431 (+)
glra4b glra4b,LOC107741187,LOC107565418,LOC107680382,LOC108442052,LOC108259905 other downstream 434290 11638516 ~ 11652683 (+)
smarca1 smarca1,LOC107597262,LOC107672796,LOC107741199,LOC107663213,LOC103034185,LOC105028962,LOC105893234,LOC106603320 other downstream 720002 11924228 ~ 11943110 (+)
G35720 LOC107654642,LOC107597266,LOC107743332,LOC107741203,LOC107557123,LOC107663229 other downstream 1044912 12249138 ~ 12255672 (+)
si:ch211-225b11.4 si:ch211-225b11.4,LOC107743340,LOC107597327,LOC107654601,LOC107580265,LOC107735986 other downstream 1309787 12514013 ~ 12528790 (+)

Expression


Co-expression Network