cnga2b (LOC107672575,LOC107733223,LOC107597245,LOC103911065,LOC108443773,LOC105893178)


Basic Information

Item Value
gene id cnga2b
gene name LOC107672575,LOC107733223,LOC107597245,LOC103911065,LOC108443773,LOC105893178
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11431860 ~ 11436272 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239806.1
ATGACAAGACAGTCAGCTGCTGAGGGATCTCCCTGCTCGCATCGACTCTCTGTGCAAACTCAAGAGGATGAGCAGGACCGAGCAGAGAGTGTGTTTAGCagGTCTCAGTCTGCGTGTGACGACACCTCATCTGAGCTGCAGCGAGTAGCAGCCCTAGAGCCTCAGGATGCACCGTCCAGAAACTCCTTCAGAGGAAGAGGGGCCCTGTCCAGGTTGGTTAGTCTGGTGGTGACTCTGAGAGACTGGGCACACAGGAGTCTGATAGAGGAGGAAGAAAGACCCGATTCCTTCCTAGAGAGATTCCGGGGACCTGAAGTACGAGCTCCACCCAGTCGAAGGAGCAACAACCCACCAGACGCCAatggaaacacaaaaggaaacaCAAAGAAGCAATGGGAGACATTTATAGTTTCTCCCTCTGATGATATTTACTACTACTGGCTGTTCTTCATCGCAGCTGCTGTTCTTTATAACTGGGTACTGCTTGTGGCAAGAGCATGTTTTGATCAGCTGCAGAGTGAGAATCCTGTTGTCTGGCTGGTGTTGGACTATTTGTGTGACTTTGTCTATATACTGGATTCATGTATGCGGCTAAGGAcagGTTACCTGGAGCAAGGACTTCTGGTGAAGGACTTGGCAAAACTTAGAGACAGCTACATTcacacatttcagttcaaactGGACATTATCTCCATTCTCCCCACGGACCTGGCGTACATCATCTTAGGCATCAATACACCACAGCTACGCTTCAATCGCCTCTTGCGTTTCTCTCGTATGTTCGAGTTCTTTAATCGGACGGAGACGAGAACCAACTACCCAAACATCTTCCGCATATGGAACCTGGTTCTCTACATTCTGGTTATCATCCACTGGAACGCCTGCATCTTCTACGCCATCTCGAAGTCTCTAGGTTTTGGGTCAGATGAGTGGGTTTATCCCAACATCTCATCCACAGAAGAAGGAGCTCTGAGGCAGAGCTACATATACTGCTTCTACTGGTCCACGCTGACTCTCACCACCATCGGTGAGATGCCACCACCGGTACGGGACGAGGAATATGTGTTTGTGGTGTTCGATTATCTTATCGGAGTCTTGATTTTTGCCACCATTGTAGGTAACGTGGGTTCCATGATTTCTAATATGAATGCCACTCGGGCAGAGTTCCAGGCACGGATCGATGCTATTAAGCATTACATGCACTTCCGCAAAGTCAGTCGCCATCTTGAGACACGTGTCATCAAATGGTTTGACTACCTGTGGACGAATCAGAAAGCAGTGGACGAACAAGAAGTCTTAAAGAATCTTCCCGACAAGCTACGTGCAGAAATTGCTATCAATGTTCATTTATCCACTCTAAAGAAAGTGCGCATATTTCAAGATTGTGAGGCAGGGCTACTAGTAGAATTGGTCTTAAAGCTGCGCCCGCAAGTGTACAGTCCTGGAGACTACATCTGCCGAAAAGGAGACATTGGAAAAGAGATGTACATCATTAAAGAAGGAAAATTAGCAGTTGTTGCTGATGATGGAGTGACACAGTTTGCATTGCTAACGGCTGGGGGTTGCTTTGGCGAGATTAGCATTCTTAACATTCAGGGCAGTAAAATGGGAAACCGCCGGACGGCTAACATTCGCAGCATCGGCTACTCTGATCTCTTCTGCCTTTCAAAGGATGACCTTATGGAGGCCGTAACCGAATACCCAGATGCTCAGAAGGTTCTGGAGGAGCGTGGAAGGGAGATTCTGAGGAAGCAGGGTCTTCTTGATGAAAGCACCGCACAGGGAGGGTTGCTCGTCATGGATACTGACGAGAAGGTAGAACGTCTGGAGGGCTCACTGGATGTTCTGCAAGCACGATTTGCGCGGTTGCTCGGGGAGTTCACAGCCACTCAAAGCAAACTGAAGCAAAGAATCACAGCGCTTGAGAGACAGCTGTGTCACACGGGCCTTGGGCTTGTTTCAGATCAAGATATGGACTCTGAGAGTAATGGTAATACTCCACGAGCCAACTCTACTACTTAGATCTGCTCATCTGCATCATGAAGGTTGTGTGAATCTATGTCACTGGTTCAAATTTCTAGCGGCACACAAATTCAAATTTACAGACATTTGCTTCTTCAAACACGTTCCAACAACCTCCAGCTTTTA

Function

NR:

description
cyclic nucleotide-gated olfactory channel

GO: NA

KEGG:

id description
K04949 CNGA2; cyclic nucleotide gated channel alpha 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239806.1 True 2148 mRNA 0.48 6 11431860 11436272

Neighbor

gene id symbol gene type direction distance location
LOC122345557 LOC107733220,LOC107672464,LOC107680363,LOC107597312 coding downstream 800 11412416 ~ 11431060 (-)
zdhhc15a zdhhc15a,LOC107733221,LOC107672497,LOC107597239 coding downstream 19513 11403003 ~ 11412347 (-)
nexmifa si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding downstream 32253 11389320 ~ 11399607 (-)
prps1a prps1a,LOC107733231,LOC107672505,LOC103031347,LOC108443767,LOC105023901 coding downstream 42965 11382680 ~ 11388895 (-)
tbx5b tbx5b,LOC107733219,LOC107592384,LOC107672879,LOC107748638,LOC107680353,LOC107597309 coding downstream 50077 11373802 ~ 11381783 (-)
chmp1b chmp1b,LOC107672547,LOC104940072,LOC101476317 coding upstream 2837 11439109 ~ 11442421 (-)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 6350 11442622 ~ 11462761 (-)
radx LOC107672617,LOC107756553,LOC107680386,LOC107597314,LOC107680354 coding upstream 83303 11519575 ~ 11526037 (-)
npas2 npas2,LOC107672582,LOC107597247,LOC107741183,LOC107565421,LOC107680380 coding upstream 90790 11527062 ~ 11573963 (-)
vma21 vma21,LOC107741184,LOC107565438,LOC107680358,LOC107756551,LOC107672888,LOC107597345 coding upstream 144562 11580834 ~ 11582813 (-)
G35434 NA non-coding downstream 101494 11304281 ~ 11330366 (-)
G35522 NA non-coding downstream 119030 11311549 ~ 11312830 (-)
G35450 NA non-coding downstream 181854 11249199 ~ 11250006 (-)
G35499 NA non-coding downstream 210969 11219968 ~ 11220891 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding downstream 218123 11212039 ~ 11213737 (-)
G35592 LOC107741189,LOC107680392,LOC107565414,LOC107733362,LOC107597318 non-coding upstream 234685 11670957 ~ 11674817 (-)
G35594 NA non-coding upstream 256278 11692550 ~ 11694947 (-)
G35597 NA non-coding upstream 259919 11696191 ~ 11697674 (-)
G35599 NA non-coding upstream 261676 11697948 ~ 11699666 (-)
G35601 NA non-coding upstream 264961 11701233 ~ 11703708 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 462742 10960311 ~ 10969118 (-)
G35384 NA other downstream 505697 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 557796 10868364 ~ 10874064 (-)
G35122 NA other downstream 970151 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 1096517 10324959 ~ 10335343 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 147508 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 359384 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 729131 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 881531 12317803 ~ 12319685 (-)
G35936 NA other upstream 1065642 12501914 ~ 12505958 (-)

Expression


Co-expression Network