chmp1b (chmp1b,LOC107672547,LOC104940072,LOC101476317)


Basic Information

Item Value
gene id chmp1b
gene name chmp1b,LOC107672547,LOC104940072,LOC101476317
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 11439109 ~ 11442421 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239809.1
TCCAGTTGTTTGGAGAAGCCGGAAGTGAATACAGGAAAATTGCAACAAACAGAGCGGGGAGCAGTTAGTGATCTACGCGAAGAGCTTGGCGAAGACTTGACTGAAAACTACTGCCGTCTAATCGTTACATTTCTTCAAGAAGCAGCAGCCAGCAGCCGAACCGGTTTGTTATGCCTAACATGGAAAAGAATTTGTTTAACCTCAAGTTTGCAGCCAAAGAACTTCAGCGTAGCTCCAAGAAATGCGACAAAGAAGAGAAAGCAGAGAAGGCCAAGGTCAAGAAGGCAATCCAGAAGGGCAATATGGAGGTTGCCCGGATACATGCTGAAAATGCCATTCGCCAGAAGAACCAATCAGTGAACTTCCTCAGAATGAGCGCAAGAGTGGATGCGGTTGCCGCACGAGTACAGACAGCAGTCACCATGAACCAGgTCACCAAATCTATGGCTGGGGTGGTGAAGGGAATGGATGCAACTCTGAAGAGCATGAACCTTGAGAAGatttcCGCTCTAATGGATAAATTTGAGCGTCAATTTGAAACTCTGGACGTACAGACGGCTCAGATGGAAGACACAATGAGCAGCACCACAACACTCACTACACCACAGGGTCAAGTTGATTCTCTGATGATGGAAATGGCGGATGAGGCCGGgCTGGACCTCAACATGGAGCTTCCTCAAGGTCAGACAGGATCAGTGGGAACCAGTGTAGCATCTGCAGAACAgGATGAGCTCTCTCAGAGACTGGCCAAACTCAGAGACCAGGTTTAAGGAGAACTgggtgtgtgcgtatgtgtgtgaaagagagagattgtgtATATGCAAGTTTGTAAGAAACATATCCCCCGTTTACTGACCCCTGGAAATATTGGCctcattgtttatttgtttagtttagttttctttttatgctgTTGAGGATGGGTGTGCAGCTTTCATTATCCACATTAACACGCAGGAAACACAATTAGTCAAAATGTAAAGGCAAATATTACATGGGAACACTGCTGACGTAATTTTGTGGCCCTGCTCAGTAATAACTGAATTAAAGATTTATTAGACATTTCTTTGTAAGAGtgcattcatgttttattaCCAGCTTGTCTTTCGTATAGCTTTTATGCCAGTGTAGCTATATTAACCTACACCAGCGTTGATATCAGACAAAGGTTGAGTGAAATTGTGACTTCTGTTTCTTCCTGCTGCACACATGGTTTGCCTCTGCTTCGATGGATTGTGGGAATATCTAACTTTAAATGCATGTGATCAAGGTGATGATTTGAATAAAGTCTCATCATTTTGTCCAAAGCAGTAAAATCCCCAGTTTATCAGATTATTTATGTCTTATGTCTTTAGAGAAATACTGATctttatgttcatttaatttattttggttcatccaaaatgtaaaaaaaaatgcttgtcaAATGATCAGCTGGcaacatatatatgtttgtgtgtatataaataaacattttgcaaatTCTG

Function

symbol description
chmp1b Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in cytosol and late endosome membrane. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP1B (charged multivesicular body protein 1B).

NR:

description
PREDICTED: charged multivesicular body protein 1b

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239809.1 True 1487 mRNA 0.42 7 11439109 11442421

Neighbor

gene id symbol gene type direction distance location
cnga2b LOC107672575,LOC107733223,LOC107597245,LOC103911065,LOC108443773,LOC105893178 coding downstream 2837 11431860 ~ 11436272 (-)
LOC122345557 LOC107733220,LOC107672464,LOC107680363,LOC107597312 coding downstream 8049 11412416 ~ 11431060 (-)
zdhhc15a zdhhc15a,LOC107733221,LOC107672497,LOC107597239 coding downstream 26762 11403003 ~ 11412347 (-)
nexmifa si:dkey-114c15.7,LOC107597238,LOC107672487,LOC107733230,LOC107592265,LOC107748635 coding downstream 39502 11389320 ~ 11399607 (-)
prps1a prps1a,LOC107733231,LOC107672505,LOC103031347,LOC108443767,LOC105023901 coding downstream 50214 11382680 ~ 11388895 (-)
brwd3 brwd3,LOC107672566,LOC107680390 coding upstream 201 11442622 ~ 11462761 (-)
radx LOC107672617,LOC107756553,LOC107680386,LOC107597314,LOC107680354 coding upstream 77154 11519575 ~ 11526037 (-)
npas2 npas2,LOC107672582,LOC107597247,LOC107741183,LOC107565421,LOC107680380 coding upstream 84641 11527062 ~ 11573963 (-)
vma21 vma21,LOC107741184,LOC107565438,LOC107680358,LOC107756551,LOC107672888,LOC107597345 coding upstream 138413 11580834 ~ 11582813 (-)
mtnr1c mtnr1c,LOC107756550,LOC107741285,LOC107672899,LOC107680355,LOC108442058 coding upstream 141534 11583955 ~ 11599842 (-)
G35434 NA non-coding downstream 108743 11304281 ~ 11330366 (-)
G35522 NA non-coding downstream 126279 11311549 ~ 11312830 (-)
G35450 NA non-coding downstream 189103 11249199 ~ 11250006 (-)
G35499 NA non-coding downstream 218218 11219968 ~ 11220891 (-)
G35501 fam76b,LOC107680374,LOC107592275,LOC107687655,LOC107597227 non-coding downstream 225372 11212039 ~ 11213737 (-)
G35592 LOC107741189,LOC107680392,LOC107565414,LOC107733362,LOC107597318 non-coding upstream 228536 11670957 ~ 11674817 (-)
G35594 NA non-coding upstream 250129 11692550 ~ 11694947 (-)
G35597 NA non-coding upstream 253770 11696191 ~ 11697674 (-)
G35599 NA non-coding upstream 255527 11697948 ~ 11699666 (-)
G35601 NA non-coding upstream 258812 11701233 ~ 11703708 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other downstream 469991 10960311 ~ 10969118 (-)
G35384 NA other downstream 512946 10923927 ~ 10926163 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other downstream 565045 10868364 ~ 10874064 (-)
G35122 NA other downstream 977400 10461208 ~ 10461709 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other downstream 1103766 10324959 ~ 10335343 (-)
G35554 LOC100304549,LOC100219516,LOC106514001,LOC103353280 other upstream 141359 11583780 ~ 11652627 (-)
msna msna,msn,moes,LOC107746233,LOC107597256,LOC107672695,LOC107663223,LOC107741191 other upstream 353235 11795656 ~ 11815944 (-)
sh2d1aa sh2d1aa,LOC107713049,LOC107741293,LOC107663232,LOC107557102 other upstream 722982 12165403 ~ 12169410 (-)
G35825 tenm1,LOC107557119,LOC107713050,LOC107597323,LOC107741271 other upstream 875382 12317803 ~ 12319685 (-)
G35936 NA other upstream 1059493 12501914 ~ 12505958 (-)

Expression


Co-expression Network