hdr (LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999)


Basic Information

Item Value
gene id hdr
gene name LOC107659287,LOC107721544,LOC107673363,LOC107709863,LOC107594999
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 9571202 ~ 9575807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239838.1
gctattCAACACAACGTGAAGCTTGTAGGCGGTTCGCGGGACAACCAGGTTGTTTCGCAAATTTTAAAATTCCACTATTGCGAAggactcatgaatattaattagatgcCAGTCGTCACGTAACTGGAATCTAAGCAATTTATACAAACAACGTCACCAGAATAGAATTAATACTCATGAGCTAGGCCTCGGCCATAGTAGGATTCGTAACTTCACTTGCCGTTCGTTCTGGCTTGAAGAAGCGCTCGATTCCACGATATAAGACCGGAAGTTTTAAACTAAACGCTCAGAGGTACGCTATCAGTAGGATGGGACGCGAGCTTCCTTCAGTTTATCCGGAGAAAGTGACACAATGATTTAACTACTATGAGATACATAATTTTCTTGATCTTGTTGTTACTAAACGCCATACGTGCTGCTAAATGTCACTCGGATCTGGCCTGGACTCGAGGATCCATCAAGAACCGATCAAGTCGGGATGTTTCCTGCAAAGAGGGCTTGGAATACGAACACAGTAACATCTGCTGCCTGAACTGCCCTGCTGGCACATATGTGAAAAAGGCCTGTCTTACCGCTTTAGAGAAAGGAGTTTGCGAACCGTGCGAGTTTGACAAATACACTGAGCATGACAATGGACTGCGGAAGTGTTTATCGTGCACCAAGTGCCGTATAGATCAGGAAACCACGGAGAAATGCACAAGTACCCAGGACACACAGTGCAAGTGCAAAGAGGGCTCGTTTTGTTTACCTGACCAGGCGTGTGAGGTGTGCAAGAAATGCAAAAGATGCACAAAGGATGAAGATACTGTAAAAAGCTGTACAAGCGTTTCCAACACCGTTTGTACGAAGAGAAGCTCTTCGAACGGCTCTAACTCAGTGACTTTCATTGTTGTTGTGTCATTCTTTGCAATGCTGGCATTCGTTGTGGGTATCGTCTACTGGACAAAGTCAAAACCATGTAAAAAAGCAGTAACATCGAGAAGTCCAAGGGAAATGGTTAAAATCTGTATGGGTGACAGTGAGAAGGTGAAAGAGGAGAGGCAGAATGCCCACAACTCCAAGATGGATGACTCCTCTCCGCTCCAGCCGTTCCTTGAGCAAAACTATGCGGTGGGTACCGACATCCCTGCTTCAGCGGAGACGGAGAAAGACAGGGGACTAGGAGACAGCCTCCCCAACACCGCCAACTCCTCACAAACTAGCCTGGCTGTGTCTGCTGCGCTTAGCGATCTCCAGCTCCATCACACTAACCAGCCTCCAAGCTCCGCCGCTTTGGAAAGAGAGTCAATAAGAAGACTTGTTCCTTTAAACGGAGAAGAATCACTGAAGAAAAGCTTTggtttttttgaagaaatggATGTCCACTATCACAACAGATTTTTCCGGTTCATTGGACTGAGTGATAATTCAATCAAAAGTGCAGAGTCTCTCTTTCCGGAAGACAGAGTTTACGAACTGTTAAAAATCTGGATGGAAAAGGAGGGACTGAAGGCAGATTTCAACAGTCTTATTGAAGCATTAATCTATTTAGACCAGAAGCTGTCAGCAGAAAATATCATTTCAAAGGCAATTTCTAATCGTTACTTTAAATATGAGGATGAGTGACTGGAAGCACGCACATATTGTCACCACCTTAGTGtcaaagatatttttttgaGCTTGACTTACCTTATGCAGTATTATTTCCCAATTCTAAAATGCAAAGTTcactgacaaaatatttatgttgGCCGTAAAAGTTTTTTAGATAAGATGCCGCTGTTTACAAATGTACAttaagtggggaaaaaaaagatttaaaatttaagactcctaatattaaatgtgtggTCTTACAtgttgaaatgcattatttctcattttgtatacaaaattgaaatgtatttaatgatcTTGAAAAGTTGTTTACATATGATTATATTGTAAACTAATAAAAGCAATTTgtctgta
>XM_043239839.1
tattCAACACAACGTGAAGCTTGTAGGCGGTTCGCGGGACAACCAGGTTGTTTCGCAAATTTTAAAATTCCACTATTGCGAAggactcatgaatattaattagatgcCAGTCGTCACGTAACTGGAATCTAAGCAATTTATACAAACAACGTCACCAGAATAGAATTAATACTCATGAGCTAGGCCTCGGCCATAGTAGGATTCGTAACTTCACTTGCCGTTCGTTCTGGCTTGAAGAAGCGCTCGATTCCACGATATAAGACCGGAAGTTTTAAACTAAACGCTCAGAGGTACGCTATCAGTAGGATGGGACGCGAGCTTCCTTCAGTTTATCCGGAGAAAGTGACACAATGATTTAACTACTATGAGATACATAATTTTCTTGATCTTGTTGTTACTAAACGCCATACGTGCTGCTAAATGTCACTCGGATCTGGCCTGGACTCGAGGATCCATCAAGAACCGATCAAGTCGGGATGTTTCCTGCAAAGAGGGCTTGGAATACGAACACAGTAACATCTGCTGCCTGAACTGCCCTGCTGGCACATATGTGAAAAAGGCCTGTCTTACCGCTTTAGAGAAAGGAGTTTGCGAACCGTGCGAGTTTGACAAATACACTGAGCATGACAATGGACTGCGGAAGTGTTTATCGTGCACCAAGTGCCGTATAGATCAGGAAACCACGGAGAAATGCACAAGTACCCAGGACACACAGTGCAAGTGCAAAGAGGGCTCGTTTTGTTTACCTGACCAGGCGTGTGAGGTGTGCAAGAAATGCAAAAGATGCACAAAGGATGAAGATACTGTAAAAAGCTGTACAAGCGTTTCCAACACCGTTTGTACGAAGAGAAGCTCTTCGAACGGCTCTAACTCAGTGACTTTCATTGTTGTTGTGTCATTCTTTGCAATGCTGGCATTCGTTGTGGGTATCGTCTACTGGACAAAGTCAAAACCATGTAAAAAAGCAGTAACATCGAGAAGTCCAAGGGAAATGGTTAAAATCTGTATGGGTGACAGTGAGAAGGTGAAAGAGGAGAGGCAGAATGCCCACAACTCCAAGATGGATGACTCCTCTCCGCTCCAGCCGTTCCTTGAGCAAAACTATGCGGAAAGAGAGTCAATAAGAAGACTTGTTCCTTTAAACGGAGAAGAATCACTGAAGAAAAGCTTTggtttttttgaagaaatggATGTCCACTATCACAACAGATTTTTCCGGTTCATTGGACTGAGTGATAATTCAATCAAAAGTGCAGAGTCTCTCTTTCCGGAAGACAGAGTTTACGAACTGTTAAAAATCTGGATGGAAAAGGAGGGACTGAAGGCAGATTTCAACAGTCTTATTGAAGCATTAATCTATTTAGACCAGAAGCTGTCAGCAGAAAATATCATTTCAAAGGCAATTTCTAATCGTTACTTTAAATATGAGGATGAGTGACTGGAAGCACGCACATATTGTCACCACCTTAGTGtcaaagatatttttttgaGCTTGACTTACCTTATGCAGTATTATTTCCCAATTCTAAAATGCAAAGTTcactgacaaaatatttatgttgGCCGTAAAAGTTTTTTAGATAAGATGCCGCTGTTTACAAATGTACAttaagtggggaaaaaaaagatttaaaatttaagactcctaatattaaatgtgtggTCTTACAtgttgaaatgcattatttctcattttgtatacaaaattgaaatgtatttaatgatcTTGAAAAGTTGTTTACATATGATTATATTGTAAACTAATAAAAGCAATTTgtctgta

Function

NR:

description
tumor necrosis factor receptor superfamily member 6-like isoform X2

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0007165 signal transduction biological_process

KEGG:

id description
K04722 TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239838.1 True 1950 mRNA 0.42 10 9571202 9575807
XM_043239839.1 False 1783 mRNA 0.40 10 9571202 9575805

Neighbor

gene id symbol gene type direction distance location
LOC122345250 cyb561a3a,LOC107673362,LOC107721551,LOC107595000,LOC107659288 coding downstream 1908 9566515 ~ 9569294 (-)
zgc:153409 LOC105896809,LOC106958509,LOC103460788,LOC103154043,LOC107671222 coding downstream 5270 9565479 ~ 9565932 (-)
LOC122345251 histh1l coding downstream 7906 9561925 ~ 9563296 (-)
loxl2b loxl2b,LOC107673422,LOC107721556,LOC107659291,LOC107709858 coding downstream 12831 9535533 ~ 9558371 (-)
sfrp1a LOC107587465,LOC107721541,LOC107659285,LOC107709857,LOC107673425,LOC107594997 coding downstream 52689 9508637 ~ 9518513 (-)
unc5db unc5db,unc5d,LOC107673416,LOC107709861,LOC107659286 coding upstream 3681 9579488 ~ 9681801 (-)
tm2d2 tm2d2,LOC107709865,LOC107673424,LOC107750179,LOC107672780 coding upstream 174845 9750652 ~ 9752957 (-)
tbx3b LOC107709835,LOC107592413,LOC107673376 coding upstream 178227 9754034 ~ 9757833 (-)
araf araf,LOC107709867,LOC107595004,LOC107673380,LOC107750175,LOC107672764 coding upstream 205031 9780838 ~ 9791734 (-)
imp4 imp4,LOC107595005,LOC107709870,LOC107750176,LOC107592341,LOC107672800 coding upstream 216380 9792187 ~ 9796033 (-)
G34704 NA non-coding downstream 323161 9246920 ~ 9248041 (-)
G34594 NA non-coding downstream 510388 9013306 ~ 9060814 (-)
G34607 NA non-coding downstream 579889 8991101 ~ 8991313 (-)
G34606 NA non-coding downstream 580179 8988611 ~ 8991023 (-)
G34583 NA non-coding downstream 637063 8933911 ~ 8934139 (-)
G34869 NA non-coding upstream 188266 9764073 ~ 9764532 (-)
G34871 NA non-coding upstream 190461 9766268 ~ 9766607 (-)
G34877 NA non-coding upstream 201826 9777633 ~ 9778238 (-)
G35035 NA non-coding upstream 705602 10281409 ~ 10296141 (-)
G35047 NA non-coding upstream 761940 10337747 ~ 10341167 (-)
G34789 vps37b,LOC107594993,LOC107673398,LOC107656485,LOC107587312,LOC107709855,LOC107721558 other downstream 168579 9337828 ~ 9402623 (-)
vamp5 LOC107594989,LOC107681225 other downstream 350674 9215498 ~ 9220528 (-)
G34580 LOC107681240,LOC107709820,LOC107560234,LOC107715750 other downstream 641149 8929470 ~ 8930053 (-)
LOC122345093 NA other downstream 893484 8674229 ~ 8677718 (-)
timm8b timm8b,LOC107717885,LOC107598437 other downstream 1139616 8429700 ~ 8431586 (-)
si:dkey-96l17.6 si:dkey-96l17.6,LOC107672751,LOC107738297,LOC107592400,LOC107744487,LOC108434467,LOC105902719 other upstream 749152 10324959 ~ 10335343 (-)
G35122 NA other upstream 885401 10461208 ~ 10461709 (-)
G35371 znf703,LOC107599934,LOC107672788,LOC107744445,LOC107687685,LOC107726392,LOC107592299 other upstream 1292557 10868364 ~ 10874064 (-)
G35384 NA other upstream 1348120 10923927 ~ 10926163 (-)
slc25a15b slc25a15b,LOC107744499,LOC107687678,LOC107599942,LOC107726376,LOC107672737 other upstream 1384504 10960311 ~ 10969118 (-)

Expression


Co-expression Network