zmat5 (zmat5,LOC107723367,LOC107681867,LOC107598336,LOC107587391,LOC107740948,LOC107660772)


Basic Information

Item Value
gene id zmat5
gene name zmat5,LOC107723367,LOC107681867,LOC107598336,LOC107587391,LOC107740948,LOC107660772
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7501635 ~ 7504656 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239905.1
gaaatgtttggggtcaatcgtttttgtttgaaagaaatgaaattcTGATCTGTTAAATTGATAATAAGTGATGGCAAAGATTTATATTGTTTgaaatgatttgtatttttaacaaatgctgtCCTCGTTGacattctattcatcaaataatcctgaaaacaaatattgcagtttccaaaaaaatatttatacaaacattttcccaatattttaattcttttcatccccagattccagattttcaaataattgtatatCAGACAAATATCGTCCTATCCTAACATAgcctatttattcagctttcagatcaTGTATGAAtctcaattttttaaaaagtacccttatgactggttttgtggtccagggtcacatttattaaatatggttgttatatttatattatgacCTTCTTTAGATGCTTCTTTTTACAGCcacaaacatgtaaaaataaaaccatagcaatctgtacatttatatatgataacTCCACCCAAACACCACCAACAATTGTTGACAGCGCAGCACGAGTTTCAGTCTCAAATGTAAACGTGTTGTGGGCGGAGTTTGGCCGCTAGAGGGTGCTATACGTCACTGAACGCCGCGTCTGCGCAGCCGGTTTGTTGTGTCCGCCATATTGAATTTCTCACAGAAGAAGCGTGTCTTTCACCGAGGACGAGTTCTAAACTTATATCTAATCTACgtgaatcagtgttttgtttgGAGTATTACTCAGCGATGGGGAAGAGGTATTACTGCGACTACTGTGACCGCAGTTTTCAAGACAACTTGCACAACAGAAAGAAGCACCTGAACGGCGTCCAGCATCACCGAGCGAAAAAAGCCTGGTTTGACAACTTCAGAGacGCTGCCACGGTTTTAAACGAAGAGCGGACAAAGGAACCCTGTAGAAAGTTTCTCCAGACAGgACAATGCGTATTTGGCACAAACTGTCGTTTTTCTCACATGTCTGAGAGGCATATTAAGATGCTGGAGCAAAAGATTGATGATGAAAAGCAGCAGAAGGAAGACCCTGACCAAGATGGATCGTCTACTGGGCGTAGAATTGATGAATGGCTCTCCAGAAGAGAGAAGAAACTGGCTGCTTTGACATCAGGAAGAGTTTTAAAGATGGAAGAGGAAGAATGCGCTGAAAGCATTGAGATACCTGCATATTTGCTGTCTATTCCAGATCTTCCTCCATCTCTTCACCCCCCGCCAACTGGTGGTTGGAGAGTGACGCTACACAATGAATGGggttgaaatgtaatttacaaaagttattttattgctttttttctttaaggacATGCTGCTATCTTTTATCATTATAAAGCCATTGTATGCAAATCCTTATGAAGGAagttcacagaaaaataaactaaatttgctgaaaattttttttcaccctcaggCTGTCCAAGATCATTTTTTTGTTCCCGCCAATGCCTCCAAAATCTTCCATTACTTGCTTGCCAGtagattctctgcagtgaatgagcGTTGATCCATTAGTACGCAGCAAGCGATGTAACGCTAAATTTCTCCAAtcctgttcagatgaagaaacaaactcttggatggcctgagggtgagtgaatTGTCAGCTAATTTTTCtttctgggtgaactgtttcttcAAGGGCCaacagtgtgtatatatttgtgtcaAATTTTAAATCTGTGCAAGTTGAGGTGCaacaaaatcatgttttgcAAGAATAAACACGTTTGCATTTTGGACAGTTCATAGGAGTATTTTGAACAAACCCAGTGCAGtgaatttcataaaatgtgGAGCTGAAACTTGTGTGTTCGGAAAAAGAACGCAAtgttattttcttgtaaaagtTGACATAATTGATTGCTTTTATTTGCTGTGTATCATAAAGTTGACAGTGTTCCCAAGCTGAACGGTACACTATATAgaaagttattgtttttttctgcgTCTGTGTCGGTGGTGTAGATTAAAATTCAGATGAGGGAGGCGTTTTCAATTTATTCCTGATTGCTTGTTCCAAGGAGGTTTTGTACTGCTAGCTTGCATGGCCTGCACTTATAAAAGGTCTTATTGGCTAGATGCTTTTTGATGGTCTAGGTGAGATTAGCTACTTAATACTAGCAccggtgtgtgtatatatagctCGTGGACCTCTACTGATGCGTTCTATATGCATACTCTTGTGGAAGTATGACCAAATAAATTAAGCTAAACCAGCA
>XM_043239906.1
ttgaaatgtttggggtcaatcgtttttgtttgaaagaaatgaaattcTGATCTGTTAAATTGATAATAAGTGATGGCAAAGATTTATATTGTTTgaaatgatttgtatttttaacaaatgctgtCCTCGTTGacattctattcatcaaataatcctgaaaacaaatattgcagtttccaaaaaaatatttatacaaacattttcccaatattttaattcttttcatccccagattccagattttcaaataattgtatatCAGACAAATATCGTCCTATCCTAACATAgcctatttattcagctttcagatcaTGTATGAAtctcaattttttaaaaagtacccttatgactggttttgtggtccagggtcacatttattaaatatggttgttatatttatattatgacCTTCTTTAGATGCTTCTTTTTACAGCcacaaacatgtaaaaataaaaccatagcaatctgtacatttatatatgataacTCCACCCAAACACCACCAACAATTGTTGACAGCGCAGCACGAGTTTCAGTCTCAAATGTAAACGTGTTGTGGGCGGAGTTTGGCCGCTAGAGGGTGCTATACGTCACTGAACGCCGCGTCTGCGCAGCCGGTTTGTTGTGTCCGCCATATTGAATTTCTCACAGAAGAAGCGTGTCTTTCACCGAGGACGAGTTCTAAACTTATATCTAATCTACgtgaatcagtgttttgtttgGAGTATTACTCAGCGATGGGGAAGAGGTATTACTGCGACTACTGTGACCGCAGTTTTCAAGACAACTTGCACAACAGAAAGAAGCACCTGAACGGCGTCCAGCATCACCGAGCGAAAAAAGCCTGGTTTGACAACTTCAGAGacGCTGCCACGGTTTTAAACGAAGAGCGGACAAAGGAACCCTGTAGAAAGTTTCTCCAGACAGgACAATGCGTATTTGGCACAAACTGTCGTTTTTCTCACATGTCTGAGAGGCATATTAAGATGCTGGAGCAAAAGATTGATGATGAAAAGCAGCAGAAGGAAGACCCTGACCAAGATGGATCGTCTACTGGGCGTAGAATTGATGAATGGCTCTCCAGAAGAGAGAAGAAACTGGCTGCTTTGACATCAGGAAGAGTTTTAAAGATGGAAGAGGAAGAATGCGCTGAAAGCATTGAGATACCTGCATATTTGCTGTCTATTCCAGATCTTCCTCCATCTCTTCACCCCCCGCCAACTGGTGGTTGGAGAGTGACGCTACACAATGAATGGggttgaaatgCTGTCCAAGATCATTTTTTTGTTCCCGCCAATGCCTCCAAAATCTTCCATTACTTGCTTGCCAGtagattctctgcagtgaatgagcGTTGATCCATTAGTACGCAGCAAGCGATGTAACGCTAAATTTCTCCAAtcctgttcagatgaagaaacaaactcttggatggcctgagggtgagtgaatTGTCAGCTAATTTTTCtttctgggtgaactgtttcttcAAGGGCCaacagtgtgtatatatttgtgtcaAATTTTAAATCTGTGCAAGTTGAGGTGCaacaaaatcatgttttgcAAGAATAAACACGTTTGCATTTTGGACAGTTCATAGGAGTATTTTGAACAAACCCAGTGCAGtgaatttcataaaatgtgGAGCTGAAACTTGTGTGTTCGGAAAAAGAACGCAAtgttattttcttgtaaaagtTGACATAATTGATTGCTTTTATTTGCTGTGTATCATAAAGTTGACAGTGTTCCCAAGCTGAACGGTACACTATATAgaaagttattgtttttttctgcgTCTGTGTCGGTGGTGTAGATTAAAATTCAGATGAGGGAGGCGTTTTCAATTTATTCCTGATTGCTTGTTCCAAGGAGGTTTTGTACTGCTAGCTTGCATGGCCTGCACTTATAAAAGGTCTTATTGGCTAGATGCTTTTTGATGGTCTAGGTGAGATTAGCTACTTAATACTAGCAccggtgtgtgtatatatagctCGTGGACCTCTACTGATGCGTTCTATATGCATACTCTTGTGGAAGTATGACCAAATAAATTAAGCTAAACCAGCA

Function

symbol description
zmat5 Predicted to enable zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZMAT5 (zinc finger matrin-type 5).

NR:

description
zinc finger matrin-type protein 5

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13152 ZMAT5; U11/U12 small nuclear ribonucleoprotein 20 kDa protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239905.1 True 2219 mRNA 0.38 5 7501635 7504654
XM_043239906.1 False 2073 mRNA 0.39 6 7501635 7504656

Neighbor

gene id symbol gene type direction distance location
tescb tescb,LOC107598325,LOC107660769,LOC107723336,LOC107681843,LOC107740949,LOC107587384,LOC108441567 coding downstream 21831 7475268 ~ 7479804 (-)
taok3b LOC107723325,LOC107740964,LOC107598017,LOC107587450,LOC107681865,LOC108270643 coding downstream 32478 7461261 ~ 7469157 (-)
myhz2 myhz2,ns:zf-e68,myhc4,myhz1.1,myhz1.2,LOC107723326 coding downstream 52177 7438835 ~ 7449458 (-)
LOC122345653 myhz2,ns:zf-e68,myhz1.1,myhc4,myhz1.2 coding downstream 72169 7419287 ~ 7429466 (-)
c9 c9,LOC107691041 coding downstream 157498 7340212 ~ 7344137 (-)
scai scai,LOC107740943,LOC107723359,LOC107681852 coding upstream 7661 7512317 ~ 7536783 (-)
ppp6c ppp6c,Ppp6c,LOC106570422,LOC107587376,LOC102313764,LOC102783418,LOC100701794,LOC107681855 coding upstream 32691 7537347 ~ 7540940 (-)
myo1hb myo1hb,LOC107681857,LOC107723363,LOC107740942,LOC107660767,LOC107587362 coding upstream 36586 7541242 ~ 7557708 (-)
ungb ungb,LOC107681856 coding upstream 53623 7558279 ~ 7561111 (-)
iscub iscub,iscu,si:ch211-191d15.2,LOC102784710,LOC100705178,LOC103373105 coding upstream 91629 7596285 ~ 7598895 (-)
LOC122345617 NA non-coding downstream 2847 7495614 ~ 7498788 (-)
LOC122345654 NA non-coding downstream 41524 7450377 ~ 7460111 (-)
G33990 NA non-coding downstream 106403 7366250 ~ 7395232 (-)
G33985 LOC107691047,LOC107597997,LOC107723329,LOC107740940,LOC107693835,LOC107587379 non-coding downstream 165090 7334414 ~ 7336545 (-)
G33947 NA non-coding downstream 307422 7193976 ~ 7194213 (-)
G34025 LOC107587446,LOC107597252,LOC107723353 non-coding upstream 67504 7572160 ~ 7578212 (-)
G34214 NA non-coding upstream 138314 7642970 ~ 7644229 (-)
G34248 NA non-coding upstream 207387 7712043 ~ 7712494 (-)
G34231 NA non-coding upstream 212917 7717573 ~ 7760165 (-)
G34260 NA non-coding upstream 356819 7861475 ~ 7861829 (-)
G33998 LOC108444092 other downstream 104482 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 558432 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 675453 6824171 ~ 6826182 (-)
G33175 NA other downstream 2878577 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 3308554 4144856 ~ 4193081 (-)
LOC122345606 LOC107712378 other upstream 202314 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 213909 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 656221 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 907226 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 925044 8429700 ~ 8431586 (-)

Expression


Co-expression Network