iscub (iscub,iscu,si:ch211-191d15.2,LOC102784710,LOC100705178,LOC103373105)



Basic Information


Item Value
gene id iscub
gene name iscub,iscu,si:ch211-191d15.2,LOC102784710,LOC100705178,LOC103373105
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 7596285 ~ 7598895 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043239907.1
ACTGAACGGCGTATAAATCCGCTATTTGAGTTTTCAAGTGCGTCATTTCAGATATCATGGCGGCTTCGCTTGCGAAGAAATGCGCGTCACCGGCAATTCTCAAAAGTCTTTCAGCTCCTCAGCTGAGGATGCAATGTGGGTATCACAAAAAGgttgtggACCACTACGAGAACCCAAGAAATGTGGGGTCTTTGGATAAAAATGCCAAGAATGTGGGCACAGGGTTGGTTGGTGCCCCTGCTTGTGGAGATGTGATGAAACTGCAGATCGAGGTGGATGAGGCCGGGAAGATTGTGGATGCCAAGTTCAAAACCTTCGGCTGTGGCTCTGCTATTGCTTCCAGTTCTTTAGCCACCGAGTGGGTGAAAGGAAAATCTATTGATGAAGCCCTCAAGATTAAAAACACTGAGATTGCTAAGGAGCTTAGCCTCCCACCAGTCAAACTGCACTGCTCAATGCTGGCTGAGGATGCCATTAAAGCAGCTTTGGCAGACTACCGTCTGAAACAGGAAGTAGAACAGGGTGAGAAGACTGTCATGGCCCGCAACTAGGAGGCGCACTTGATCCTCTAAATCGGTGGTTCTCAATTGGTGCTTCACGACCAAAAAGGGTTTCAGGTCTGTTCTGTTTGGATCGTAGGGAACAGGGAAATATCTACTCTGAATGGCAATATTATAATCCAGCTAACCATGCAGTTTGATAAACAGGCTTACTgtgttgaaagaaaaaaaatgcatttattttctcccattgtgtctgtttttttctttatatattgtttacTCTGCACAGATCATGCTAATAAATTGCAGCATTCGGGGTAAGATCACCGTTTGAAATCCAATGCAAAATCTGAGTCTTGAAGCAAAACCAGTTGAGAATCAATGCTCTTCATCCTCCCTTTGAGTTTAGACCAAAGCTCTCCAACTCTTGCACTGTAGCCAGTCTTTTAAACGCACAATGTAAAAGTACTGACCAACACTGTTACAGTCTAAGCCATATGTGTTTAGATATGTTGATGCAATGAAAAAGCTAGCTGAACACGCACACAAACTAtcttattctattattttagtttgacaGAACGACAATGTGATTATGCTGAACGGATTTTATTTGATGGCCTTTGAAACATCAGTACTTTCAATAAAGCTTGTGTAAACCTCAA

Function


symbol description
si:ch211-191d15.2 Predicted to enable iron ion binding activity and iron-sulfur cluster binding activity. Predicted to be involved in neuron projection regeneration. Predicted to act upstream of or within iron-sulfur cluster assembly. Orthologous to human ISCU (iron-sulfur cluster assembly enzyme).
iscub Predicted to enable 2 iron, 2 sulfur cluster binding activity and ferrous iron binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within iron-sulfur cluster assembly. Predicted to be active in mitochondrial matrix. Orthologous to human ISCU (iron-sulfur cluster assembly enzyme).
iscu Enables molecular adaptor activity. Involved in negative regulation of iron ion import across plasma membrane; positive regulation of aconitate hydratase activity; and positive regulation of mitochondrial electron transport, NADH to ubiquinone. Located in cytosol and mitochondrion.

NR:

description
iron-sulfur cluster scaffold protein b

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22068 ISCU; iron-sulfur cluster assembly enzyme ISCU, mitochondrial

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043239907.1 True 1168 mRNA 0.43 5 7596285 7598895

Neighbor


gene id symbol gene type direction distance location
ungb ungb,LOC107681856 coding downstream 35174 7558279 ~ 7561111 (-)
myo1hb myo1hb,LOC107681857,LOC107723363,LOC107740942,LOC107660767,LOC107587362 coding downstream 38577 7541242 ~ 7557708 (-)
ppp6c ppp6c,Ppp6c,LOC106570422,LOC107587376,LOC102313764,LOC102783418,LOC100701794,LOC107681855 coding downstream 55345 7537347 ~ 7540940 (-)
scai scai,LOC107740943,LOC107723359,LOC107681852 coding downstream 59502 7512317 ~ 7536783 (-)
zmat5 zmat5,LOC107723367,LOC107681867,LOC107598336,LOC107587391,LOC107740948,LOC107660772 coding downstream 91629 7501635 ~ 7504656 (-)
zdhhc12b zdhhc12b,LOC107597310,LOC107712389,LOC107737479,LOC107681847,LOC103035983 coding upstream 14994 7613889 ~ 7618964 (-)
uap1l1 uap1l1,LOC107598388,LOC107737483,LOC107681846,LOC107712387,LOC107664408,LOC107587443 coding upstream 20202 7619097 ~ 7623472 (-)
slc25a25b slc25a25,slc25a25b,LOC106570619,LOC107712386,LOC107587368,LOC107664407 coding upstream 25229 7624124 ~ 7640250 (-)
si:dkey-220k22.1 LOC107664520,LOC107597375,LOC107748505,LOC107664410,LOC107712354 coding upstream 127066 7725961 ~ 7780945 (-)
camkk1a camkk1a,camkk1,LOC107587369,LOC107664416,LOC107712376,LOC107664519 coding upstream 195855 7794750 ~ 7829765 (-)
G34025 LOC107587446,LOC107597252,LOC107723353 non-coding downstream 18073 7572160 ~ 7578212 (-)
LOC122345617 NA non-coding downstream 97497 7495614 ~ 7498788 (-)
LOC122345654 NA non-coding downstream 136174 7450377 ~ 7460111 (-)
G33990 NA non-coding downstream 201053 7366250 ~ 7395232 (-)
G33985 LOC107691047,LOC107597997,LOC107723329,LOC107740940,LOC107693835,LOC107587379 non-coding downstream 259740 7334414 ~ 7336545 (-)
G34214 NA non-coding upstream 44075 7642970 ~ 7644229 (-)
G34248 NA non-coding upstream 113148 7712043 ~ 7712494 (-)
G34231 NA non-coding upstream 118678 7717573 ~ 7760165 (-)
G34260 NA non-coding upstream 262580 7861475 ~ 7861829 (-)
G34265 NA non-coding upstream 337616 7936511 ~ 7937371 (-)
G33998 LOC108444092 other downstream 199132 7382346 ~ 7397153 (-)
usp20 usp20,LOC107691016,LOC107693839,LOC107710745 other downstream 653082 6922846 ~ 6943203 (-)
G33758 LOC107596916,LOC107710760,LOC107700938,LOC107587412,LOC107693817 other downstream 770103 6824171 ~ 6826182 (-)
G33175 NA other downstream 2973227 4622490 ~ 4623058 (-)
LOC122346168 srrm4,LOC107720865,LOC107702227,LOC107561260,LOC107656798 other downstream 3403204 4144856 ~ 4193081 (-)
LOC122345606 LOC107712378 other upstream 108075 7706970 ~ 7711824 (-)
si:dkey-220k22.3 NA other upstream 119670 7718565 ~ 7721758 (-)
si:ch211-117m20.4 si:ch211-117m20.4,LOC107663429,LOC107597540,LOC107717881,LOC107677428,LOC107677427 other upstream 561982 8160877 ~ 8164026 (-)
G34372 zbtb44,LOC107597664,LOC107717865,LOC107677410,LOC107587334,LOC107722796 other upstream 812987 8411882 ~ 8414806 (-)
timm8b timm8b,LOC107717885,LOC107598437 other upstream 830805 8429700 ~ 8431586 (-)

Expression



Co-expression Network