gal3st1a (gal3st1,gal3st1a,LOC107741514,LOC107653284,LOC107755837,LOC107668734)


Basic Information

Item Value
gene id gal3st1a
gene name gal3st1,gal3st1a,LOC107741514,LOC107653284,LOC107755837,LOC107668734
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1616062 ~ 1622327 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239929.1
CCCTGTTCTGTTTTGaacctctttttttccctgttccttctctgtctttctgtcttgcCTTCCCTTCCCTTATCCTAACTTTACCTCCCTCCTTCAGCCTCCCGTCTTCTCCTGTACGCTCATTCACAAATGCAAACAAGTGCAGGTCCCCAGGCGGCTGGTCCTGCGTCACAGAGAGCGCTGGCTGAGCCTCTTCTGCATGCAGTTTAGCCAGCTCAGCTCTACAGCGTGCagacggaggaggagaggagaggagaggcgGGGGCTTCAAAATCATCAGGTGTGTGCAGGGTGAACGATCGCCTGGATATTTCACTGAAGATAAGAGGGCTACGGATCTGTTAACCTGGCATACCACGGCTGGACAGTTAACTGTGAAGGCATCAATGTCTTTCCAGCCTTATCATGCATCGTTGTTAACAAAGTCAGGTTTTTCTCTTCAGAGTCATTGCTTTTTCTGCCGATCAAGCTGTGACAGGAATCTACATGATTTGGGTTTTCTTCCAGGGTCCAGCCAGGTAGCTATGATGGTTGGAAAGCCAGTCAGGCAGTGGAGGTCCATCTGTAAGGGACTGGTCCTGGGTGCGCTTCTGACCACCTGCATGATTCTTTTGTACTGCCTGTCGACCCCAGAGGTCCAGTTTGGCCTGCAAGAGGTCCCAGTGCCGTACTCGTGCGCTCATCGTCCTTCCGCCGCCCACTCCTCAACAATCTCTAACAGCTCCCATCACGCCTCTGGCCGGCGAACCTGCACTCCAAAAGTGGACATCATGTTCATGAAAACCCATAAAACAGCCAGCAGCACTTTCCTCAACATTCTCTTTCGCTTTGGGGAAAAACACCACCTCAAATTTGCCTTCCCCAACAGCCGCAATGACTTCTTTTACCCGTCGTCCTTCCATCGCTCGCAAGTGAAGGACTACAGGCCGGGAATGTGTTTCAACATCATCTGTAATCACATGCGTTTCAATGCTGCTGAGGTGGCCAGAGTGCTTCCCGCTGACACCTCGTACATCACAATCCTCCGGGACCCGGCCGATCTCGCCGAGTCCTCGTTCCACTATTTTGGACGCGTCGTACCACTCACTTGGAAGCTTTCTGGAGATGACAAGCTGAGAGAATTCCTGAAGGATCCAAAGCTCTACTACGACTCAGAGGGATTCAATTCGTTCTATCTCAAAAACTTGCTTTTTTTTGACTTCGGACAGGATAATAACTTACATTCAGACGACCCAAAAGTGGACGAGGCCATTCGCGCGATCGCCAAGCGTTTCCAtttggtaatgcttgtggagTATTTCGAAGAGTCGCTCATCCTGCTCAAGGACGCCCTCTGCTGGGACATGGAGGACTTGCTTTTCTTCAAACTCAATGCCCGGAAAGGTTCGACCGTTTCTAAGCTGACTCCAGAGCTCAGGGCCAAAGCGCTGGAGTGGAACGCCATCGATTGGAAGCTTTACCAGTATTTCAACGCCACCTTCTGGCGTAAAGTGGACGCTTACGGCCATGAGCGCATGGCGAGGGATGTGGCAGAGCTGCAGCGCAGAAATGCGGAAATGGCCTCCATTTGCATTGAAGGAGGCCACGCCGTCGATGCAGGAAGCATCTTGGAGACGTCCATGCAGCCGTGGCAACCCATCGGCGAGAAGTCGATTATGGGATACAATCTGAAGAAGAATGTCGACAAAGCGCATCAAAAGCTGTGCAGGAAGATGCTCACGCCAGAGCTGCAGTATCTCACCGATATGGGAGTCAACCTGTGGATAACAAGACTGTGGGGTCGCATAAGAGAGATTCTTCACTGGTAGCTCagattaaatgttttgcttagGTGAAAGGTCAGCACTGATTTTATGAGAGATTTGTTTTCGCCACATAATAAAAGATTCGAATGCCATTGTGtcttttatctcacaattccaattatttttagtttatgtgTCGCAATTCAGAAACTTTTTGTATGGATTTTTCCTTCCATAGTTCAGACTATTTCTCTGACTAGCAACACAACAAAGACATCTCATATttacgacaaaaaaaaaaaaaaagatatcaatatatatatattaatgtatcgCTGTTGTTTTTAACAGGATTATTTCTacctgttaaataaatataaataaaagaggtaattttgacttttttacaAAGTCGTTGCAAAGTTAcaaaatcgttttttttctcacatttttttttctcacaaggTTATCTCATAAACCAcagtttatatctcgcaatcatgtaaaaaaaagagtctGAATTGCAAGATACAAACTCTAAATTgggagatataaactcacaaataTGAGTCTGAATAGTGGaagaaaattgtgaaataaaaacttgcaattcagaaataatacaagaaaaaaaagacagatttgttttttgtaattatgttttttattctgtggcagaaaTAAGTTTCCATAGACTTGTATACAACTGACctaaaacctgtttttctgtgtcagaaagaaataaaaacattaaaagaaatgactgaataaaacattttcatatttaaatgaatcttaCCCAAATAAGTGGTGACAGTCACATCTTTAACATGTTAGTTTTGTGTTCAGAAATGTACTGTAAGTCACCGCTATGTATTACAAGTACGTAGTGTGTGAGTGCTTAAATCaatcatcaaaatgaatcaACTACTGTTGAATGACCTCATTCTTTGAAGCTCTTATTGTTGGTGCCAATGGCAATAACAGTAATTTCCTAAACTGGTTTAGACTCGTTCAGAACCTGAGCTTTACTGTTATCATCGCATGAatgatacagtaaaaaataacttGAATGTCGTGTTGAGAGGTGCTTTTAAGCATAAATGTGATGAAGTGTTGGGCTTCCTATGGAAGAGGCCACTGagcagcaatgaaatgcatgaaagatgacaaaataaaaac

Function

symbol description
gal3st1a Predicted to enable galactosylceramide sulfotransferase activity. Predicted to be involved in galactosylceramide biosynthetic process and myelination. Predicted to act upstream of or within glycolipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GAL3ST1 (galactose-3-O-sulfotransferase 1).
gal3st1 Enables galactosylceramide sulfotransferase activity. Involved in glycerolipid metabolic process and sphingolipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of plasma membrane.

NR:

description
galactosylceramide sulfotransferase-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001733 galactosylceramide sulfotransferase activity molecular_function

KEGG:

id description
K01019 GAL3ST1; galactosylceramide sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239929.1 True 2927 mRNA 0.44 3 1616062 1622327

Neighbor

gene id symbol gene type direction distance location
pes pes1,pes,LOC107704970 coding upstream 3514 1603813 ~ 1612548 (+)
pole pole,LOC107704563,LOC107668756 coding upstream 18334 1579923 ~ 1597728 (+)
si:dkey-98f17.5 si:dkey-98f17.5,LOC107755832,LOC107599615,LOC107668759,LOC107704964,LOC108431725,LOC108255717,LOC107599159,LOC106580116 coding upstream 73678 1530761 ~ 1542384 (+)
rfc5 rfc5,LOC107716544,LOC107668751,LOC107704514 coding upstream 114211 1494928 ~ 1501851 (+)
spring1 zgc:110063,LOC107667499,LOC107755806,LOC107599146,LOC107704950 coding upstream 305069 1307563 ~ 1310993 (+)
ppil2 ppil2 coding downstream 770 1623097 ~ 1652416 (+)
LOC122344671 LOC107755842,LOC107599645,LOC107599132 coding downstream 120988 1743315 ~ 1745171 (+)
ydjc LOC107741491,LOC107704612,LOC107599608,LOC107755843,LOC107668745,LOC107599128 coding downstream 151638 1773965 ~ 1779426 (+)
ccl19a.1 LOC107704652,LOC107741512 coding downstream 172207 1794534 ~ 1796438 (+)
tctn2 LOC107704714,LOC107741513,LOC107599155 coding downstream 174507 1796834 ~ 1806041 (+)
G32443 NA non-coding upstream 39792 1544752 ~ 1576270 (+)
G32439 NA non-coding upstream 102513 1513050 ~ 1513549 (+)
G32406 NA non-coding upstream 107955 1497804 ~ 1508107 (+)
G32381 NA non-coding upstream 190965 1422607 ~ 1425097 (+)
G32390 NA non-coding upstream 197576 1411723 ~ 1418486 (+)
G32499 NA non-coding downstream 31106 1653433 ~ 1653899 (+)
G32504 NA non-coding downstream 50702 1673029 ~ 1674356 (+)
LOC122345819 NA non-coding downstream 67782 1690109 ~ 1697674 (+)
G32513 mapk1,LOC107386038 non-coding downstream 83647 1705974 ~ 1706887 (+)
G32538 NA non-coding downstream 137667 1759994 ~ 1760230 (+)
selenoe fep15,LOC107667262,LOC107566481,LOC107750764,LOC108443918,LOC101066385,LOC105931211,LOC100703742 other upstream 500657 1112264 ~ 1115405 (+)
G32277 NA other upstream 558909 1055193 ~ 1057153 (+)
tal2 tal2,LOC107594599,LOC107725114,LOC107723303,LOC107667406 other upstream 1164697 450168 ~ 451365 (+)
LOC122346012 cunh9orf84,LOC107704297 other upstream 1168576 432779 ~ 447486 (+)
susd1 susd1,LOC107594557,LOC107704917,LOC107572260,LOC107667560 other upstream 1184597 419242 ~ 431465 (+)
ccl19a.2 ccl19a.2,LOC107704660,LOC107755825,LOC107599642,LOC107668736,LOC107599131,LOC107741495 other downstream 169501 1791828 ~ 1793266 (+)
G32611 prrc2b,LOC107704672 other downstream 200327 1822654 ~ 1826114 (+)
G32620 prrc2b,LOC107704672,LOC107562325 other downstream 212821 1835148 ~ 1843013 (+)
LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 other downstream 278300 1900627 ~ 1905499 (+)
LOC122345711 LOC107556260,LOC107714787,LOC107691117,LOC107551460,LOC107715220,LOC107690391,LOC565819 other downstream 387890 2010217 ~ 2019150 (+)

Expression


Co-expression Network