CI01000004_16579927_16586961


Basic Information

Item Value
gene id CI01000004_16579927_16586961
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 16579927 ~ 16587197 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_16579927_16586961.mRNA
GGTTATGGCGTAACTCTATCGGCTGCACCCCCACTCCGCAGGGGCAGCACCCCCCTGCCAATCAAGCATCAGCTGAGGCGAGAGGAGGCTGTTTCCGAGGATTACGATTGGACGCCGGGGCTCGATGAGCCTGCGACTCCGCAAATCAATATCCAAGATTCGCCTACCCCAAAACCGCCGCAGCAGAAGTACCACGGACCCCTTCGGATAGTACTACTGGGCCAAAACGGAGTGGGCAAATCCTCTCTGGCACTTTGCCTTGCTGGACTGTCAGACAGATCACTCTCTGTAGACTCTGAAACCCAAGCAACCGATGAGGGTTACCAGCGGCGAGTGACTGTGGATGATGAGGACAGCACAATTTTAGTATATGACAGTTGGAAACAGGATGAGTTTTGGATTAATTCCAGGGCAGTGGCTGGAAAAACTCCAGACTCCTCCCATTCCATCATTTCTCTCTTTCTCCATCTTGCCATTTTTCTCTTTCAAAGCATCCCTCTTTCTCTCTTCCTCAGTGGCACATCGTATCACGTGACCTCTGACCTCACCCGCCGCGTTGCATTCTATACCCGCCTGGCCCGTTCCCCGGTTGCCATGGCTACCGGTGGTTACAGCAAACAAAAGGATCTCAGATAAACTATGCAGTGATTAATTTTAATTTTACAGATGCAGAGATTCAGTGCTGCCCTTATAGCTTCACGGTTCACTGATTGCAGTCTGTATCTCATGGATTGAAGAATGTTCAGCAGAAGTCTGTCAGTAATGCAGTTACTTCATCAGGGTTTATTTGAGTAGTGGTTAGAGCTGCGCAATTGATCCAATCAAAATCGATATTTCCTTTGCACGATAAACCATAAAAGGCTGGGATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_16579927_16586961.mRNA True 872 mRNA 0.49 3 16579927 16587197

Neighbor

gene id symbol gene type direction distance location
CI01000004_16567132_16570668 NA coding upstream 8559 16567132 ~ 16571368 (+)
CI01000004_16490931_16555397 CARMIL3, LRRC16B coding upstream 23934 16490931 ~ 16555993 (+)
CI01000004_16467711_16471121 NA coding upstream 108420 16467711 ~ 16471507 (+)
CI01000004_16407140_16438873 NA coding upstream 140677 16406985 ~ 16439250 (+)
CI01000004_16346680_16401924 NA coding upstream 178003 16346680 ~ 16401924 (+)
CI01000004_16649360_16654303 NA coding downstream 61974 16649171 ~ 16654353 (+)
CI01000004_16695941_16729500 NA coding downstream 108436 16695633 ~ 16729719 (+)
CI01000004_16812706_16814956 NA coding downstream 225509 16812706 ~ 16815068 (+)
CI01000004_16869205_16944944 CLSTN2 coding downstream 282008 16869205 ~ 16944944 (+)
CI01000004_17062704_17110319 CRHR2.S, CRHR2 coding downstream 475507 17062704 ~ 17110319 (+)
G34330 NA non-coding upstream 107694 16472007 ~ 16472233 (+)
G34323 NA non-coding upstream 124301 16449680 ~ 16455626 (+)
G34322 NA non-coding upstream 130837 16448846 ~ 16449090 (+)
G34297 NA non-coding upstream 270621 16301233 ~ 16309306 (+)
G34266 NA non-coding upstream 399078 16180508 ~ 16180849 (+)
G34277 NA non-coding downstream 54145 16641342 ~ 16646222 (+)
G34357 NA non-coding downstream 78383 16665580 ~ 16672434 (+)
G34359 NA non-coding downstream 85347 16672544 ~ 16672767 (+)
G34361 NA non-coding downstream 86724 16673921 ~ 16674301 (+)
G34362 NA non-coding downstream 87308 16674505 ~ 16674814 (+)
G33815 NA other upstream 513463 16063415 ~ 16066464 (+)
G34220 NA other upstream 639977 15939357 ~ 15939950 (+)
CI01000004_15091390_15096502 GA45B, GADD45B, GADD45BB other upstream 1487958 15091200 ~ 15097173 (+)
CI01000004_14036114_14036449 KIAA0040 other upstream 2543027 14035393 ~ 14039142 (+)
CI01000004_12646972_12652534 NA other upstream 3924216 12646838 ~ 12652570 (+)
G34400 NA other downstream 390131 16971995 ~ 17025976 (+)

Expression


Co-expression Network