surf4 (surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134)


Basic Information

Item Value
gene id surf4
gene name surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30646286 ~ 30652310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239943.1
CCGCGGCGCGGTGCATTGTGGGACGGCGGCGGAGGCCTAGGCGGGCGGCGCGAGCGCTGGACGGACGCGCGCGGCTTTACGTTAGTTTCGGGCTGACTGTCGGAGGGCGATGGCGCGCGAGGACGTGATGAGCGCGGCGGAGGACGCGGCGGACCAGTTCCTGCGGGTCACGAAGCTGTACCTGCCTCACATCGCTCGGCTCTGTCTCATCAGCACCTTCCTGGAGGACGGCATCAGGATGTGGTTCCAGTGGAGCGAGCAGAGAGACTACATCCAGGCCACCTGGAGCTGCGGCTACTTCCTCGCCTCCGGCTTCGTGCTCATCAACCTGATAGGACAGAtcaGTGGCTGTGTTCTGGTTCTCAGCAGAAATCTGGTTCAGTACGCCTGCTTCGGTCTGTTCGGGATCATCGCCCTGCAGACGGTCGCTTACAGCATTCTGTGGGATCTCAAGTTTCTCATGAGgaatCTGGCTCTGGGTGGagggctgctgctgctgctggccgAGTCTCGCTCCGAGGGGAAGAGCATGTTTGCCGGCGTGCCGTCGATGGGAGAGAGCTCTCCGAAGCAGTACATGCAGCTCGGTGGCCGCGTGCTTCTGGTGCTCATGTTCATGACGCTGCTGCACTTCGACTCCAGCTTCTTCTCTatccTGCAGAACATGGTGGGAACGGCTCTGATCGTGCTGGTGGCGGTGGGCTTGAAGACGAAGCTGGCCGCCCTGACGCTGGTTCTGTGGCTCCTGGCCGTCAACGTCTACTTCAACGCCTTCTGGACGGTGCCGGCCTACAAACCCATGCACGACTTCCTCAAGTACGACTTCTTCCAGACCACCTCGGTCATCGGAGGCCTGCTGCTGGTGGTGGCTCTCGGCCCGGGCGGCGTCTCCATGGACGAGAAGAAGAAGGAGTGGTGAGGACGCCCGGAGCTGCCCTTCTGTTTTTTAGCGCGTTTTATTCGCAGCGGTCGAGGAGATTCGTCATTCGTTTCGAGTcgttttgtgtttaataatgaAAGCGTGTTTATGGAGGAGCGTTCGCCGGGAGAGAGAAGTGCAGCAGATCTTCTTCGTCCTGGACTCTTTCTCGTGTTCTTCGGGATGCTCGGGTCGGATGATGTTCCTGAGGACCTGATGCATCAGACGTCTGTGAACTCTGAACTCTCAAACTCTGAGTTTGTTTTGCGGTCGACGAACGGGACGGTTATCCAAGTGTTTTCTGTTGAGTCTAAGAAAGACGagtcactattgattttttttttcagacgtttatattgtgtttttgactttttttggttttcagaTCGCGGcggaaaaataaagcaaaacctACACATAA

Function

symbol description
surf4 Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Orthologous to human SURF4 (surfeit 4).

NR:

description
surfeit locus protein 4 isoform X1

GO:

id name namespace
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20369 ERV29, SURF4; ER-derived vesicles protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239943.1 True 1340 mRNA 0.57 6 30646286 30652310

Neighbor

gene id symbol gene type direction distance location
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding downstream 1539 30622204 ~ 30644747 (-)
LOC122344972 NA coding downstream 65958 30576288 ~ 30580328 (-)
LOC122344973 NA coding downstream 103846 30540497 ~ 30542440 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding downstream 108371 30535834 ~ 30537915 (-)
LOC122345124 si:zfos-128g4.1,LOC107675886,LOC107577831 coding downstream 122867 30520606 ~ 30523419 (-)
surf2 surf2,LOC107740795,LOC107581206,LOC107743090 coding upstream 853 30653163 ~ 30655957 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding upstream 7809 30660119 ~ 30672096 (-)
golga2 golga2,LOC107658391 coding upstream 81794 30734104 ~ 30754940 (-)
LOC122344907 NA coding upstream 113321 30765631 ~ 30769907 (-)
rabepk rabepk,LOC107743065,LOC107579283 coding upstream 178879 30831189 ~ 30835734 (-)
G40701 NA non-coding downstream 55646 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 76186 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 80130 30565684 ~ 30566156 (-)
G40670 ythdc2 non-coding downstream 81909 30564117 ~ 30564377 (-)
G40684 NA non-coding downstream 127831 30516065 ~ 30518455 (-)
LOC122345983 NA non-coding upstream 56463 30708773 ~ 30710678 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding upstream 67882 30720192 ~ 30725226 (-)
G40739 NA non-coding upstream 118404 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 168815 30821125 ~ 30846878 (-)
G40762 NA non-coding upstream 213933 30866243 ~ 30919600 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 33145 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 552710 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 717611 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 991225 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1156082 29460585 ~ 29490204 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 137323 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 165422 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 679039 31331349 ~ 31350449 (-)
apooa apoo other upstream 1050143 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 1068960 31721270 ~ 31722906 (-)

Expression


Co-expression Network