surf2 (surf2,LOC107740795,LOC107581206,LOC107743090)


Basic Information

Item Value
gene id surf2
gene name surf2,LOC107740795,LOC107581206,LOC107743090
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 30653163 ~ 30655957 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043239944.1
TTTAGTAACGTCGCGCCGCGCAGCATGTGCACCCAAACAGAGGCGTTTTCAGCGTTTTTGTGGTAATAGTTACAGTAACAGGTTTTGTTCGCTGATATTTAATTTTCGCCGTTATGGAGGATTTACCGGAAGATTTGCGATCCTTTCTACAGAAGCACCCTTGCTTTGAGCTCACAGACTCCTCGAAGATCCGCTGCTCTCTGAACGCGCACGAGTTTCCGTGCAGCCTGGCCGAGCTGCAGCTCTTCACCGCCGGCAACAAATACAAGAAACTCCGCGCTCAGGCCGACTTCGACTACAGCCGGTACGAGCCGCACATCGTCAGCAGCACGAAACAGCCACACCATCTCTTCTGTAAGCTGACGTTGCGTCACATCAACCGCGTGCCGGAGCACGTTCTTCGTCACGTCGGCGGCCGGCGCTACAGGAGAGCTCTGGAGCAGTACGAGGAGTGCGTCCGGCGCGGCGTGGAGTTCGTTCCCGTGCAGCTCAAGCAGAAGAACAGACCCAAGGAGGCCGCAGGAAGTGAGCGGCGGCCCAGCAGGAAGCAGGACAGCGGCGTCTGGACCCCGAGCTCGAGCGGCGGCGAGGACAGCGACTCCTCGGACAGCATGTCCGATCTTTACCCACCGTCTTTGTTCAGCGTGAAGAAGCAGGACGGTGAGCAGGAAGATGATTTTCAGaccgatgatgatgatgatgatgaagaggtGTCTGAAATGGAAGTAGAAAACCATGTGCAGAAACGCAAAAAGGTCCAGTCTGCTGGGTTTACCAAGAAGTTtaagaagaacaagaagaggAAGGGTTTTAAACATGTTGGCAAAGTCaatggaaaataataaagtttGTAATTCATGGAAAAA

Function

symbol description
surf2 Orthologous to human SURF2 (surfeit 2).

NR:

description
surfeit locus protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043239944.1 True 866 mRNA 0.53 6 30653163 30655957

Neighbor

gene id symbol gene type direction distance location
surf4 surf4,LOC107740232,LOC107689610,LOC105890423,LOC103376134 coding downstream 853 30646286 ~ 30652310 (-)
ass1 ass1,LOC107740768,LOC107687233,LOC107689608 coding downstream 8416 30622204 ~ 30644747 (-)
LOC122344972 NA coding downstream 72835 30576288 ~ 30580328 (-)
LOC122344973 NA coding downstream 110723 30540497 ~ 30542440 (-)
LOC122345715 LOC107687242,LOC107717337,LOC107558070 coding downstream 115248 30535834 ~ 30537915 (-)
ciz1a ciz1a,LOC107687257,LOC107571633,LOC107740230,LOC107689607 coding upstream 4162 30660119 ~ 30672096 (-)
golga2 golga2,LOC107658391 coding upstream 78147 30734104 ~ 30754940 (-)
LOC122344907 NA coding upstream 109674 30765631 ~ 30769907 (-)
rabepk rabepk,LOC107743065,LOC107579283 coding upstream 175232 30831189 ~ 30835734 (-)
LOC122344688 LOC107743064,LOC107698017,LOC107734413 coding upstream 264860 30920817 ~ 30941882 (-)
G40701 NA non-coding downstream 62523 30590197 ~ 30590640 (-)
G40698 NA non-coding downstream 83063 30567251 ~ 30570100 (-)
G40672 NA non-coding downstream 87007 30565684 ~ 30566156 (-)
G40670 ythdc2 non-coding downstream 88786 30564117 ~ 30564377 (-)
G40684 NA non-coding downstream 134708 30516065 ~ 30518455 (-)
LOC122345983 NA non-coding upstream 52816 30708773 ~ 30710678 (-)
G40708 dnm1,LOC107568151,LOC107658356 non-coding upstream 64235 30720192 ~ 30725226 (-)
G40739 NA non-coding upstream 114757 30770714 ~ 30772024 (-)
G40751 hspa5,LOC107687227,LOC107567952 non-coding upstream 165168 30821125 ~ 30846878 (-)
G40762 NA non-coding upstream 210286 30866243 ~ 30919600 (-)
fubp3 fubp3,LOC107689604,LOC107687236,LOC106566971 other downstream 40022 30590843 ~ 30613141 (-)
rnf170 rnf170,LOC107721034,LOC107687247 other downstream 559587 30087966 ~ 30093576 (-)
LOC122344966 LOC107749532,LOC107566852,LOC107742171,LOC107565644,LOC107690083 other downstream 724488 29924702 ~ 29928675 (-)
eng LOC107562335,LOC107704777,LOC107741503 other downstream 998102 29614719 ~ 29655061 (-)
G40182 brinp1,LOC107715673,LOC107674904 other downstream 1162959 29460585 ~ 29490204 (-)
G40713 lzts3,LOC107567954,LOC107687254,LOC107574519,LOC795227,LOC107665914 other upstream 133676 30789633 ~ 30792719 (-)
G40752 hspa5,LOC107686379,LOC107743071,LOC107687227,LOC107567952,LOC107734417,LOC107734415,LOC107686377 other upstream 161775 30817732 ~ 30826358 (-)
LOC122344987 LOC107591496,LOC107663763,LOC107725109,LOC107734348,LOC107563429,LOC107654309 other upstream 675392 31331349 ~ 31350449 (-)
apooa apoo other upstream 1046496 31702453 ~ 31711737 (-)
G41035 LOC107734367,LOC107665727,LOC107725151,LOC107591476,LOC107654325,LOC563292 other upstream 1065313 31721270 ~ 31722906 (-)

Expression


Co-expression Network